Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47203 * 2 1 4 4 C 1.34234 * 117.00137 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99958 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00066 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.41142 * 22.14938 * 6 4 3 8 8 C 1.53253 * 109.40752 * 262.31074 * 6 4 3 9 9 S 1.81903 * 108.50736 * 177.87843 * 8 6 4 10 10 C 1.81900 * 101.91386 * 51.30279 * 9 8 6 11 11 C 1.53241 * 108.50590 * 308.69700 * 10 9 8 12 12 N 1.46463 * 109.40726 * 141.91685 * 6 4 3 13 13 C 1.46903 * 111.00127 * 317.88377 * 12 6 4 14 14 C 1.52994 * 109.47211 * 164.19079 * 13 12 6 15 15 C 1.53008 * 109.46913 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46933 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00342 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47302 * 89.99875 * 20 18 16 22 22 H 1.48496 * 109.47697 * 210.00186 * 20 18 16 23 23 H 1.48505 * 109.46973 * 330.00467 * 20 18 16 24 24 H 1.08997 * 109.47322 * 59.99969 * 1 2 3 25 25 H 1.09002 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46744 * 299.99700 * 1 2 3 27 27 H 1.08999 * 109.47155 * 239.99954 * 2 1 3 28 28 H 1.09010 * 109.47163 * 119.99900 * 2 1 3 29 29 H 1.08997 * 109.63120 * 297.58506 * 8 6 4 30 30 H 1.09002 * 109.63121 * 58.17528 * 8 6 4 31 31 H 1.08992 * 109.63119 * 188.98971 * 10 9 8 32 32 H 1.09001 * 109.78688 * 68.49705 * 10 9 8 33 33 H 1.08998 * 109.40899 * 301.87976 * 11 10 9 34 34 H 1.09005 * 109.40511 * 182.11940 * 11 10 9 35 35 H 1.08998 * 109.47007 * 284.19284 * 13 12 6 36 36 H 1.09004 * 109.46946 * 44.18660 * 13 12 6 37 37 H 1.09003 * 109.47078 * 299.99597 * 14 13 12 38 38 H 1.08992 * 109.47503 * 60.00399 * 14 13 12 39 39 H 1.08998 * 109.47051 * 300.00049 * 15 14 13 40 40 H 1.09002 * 109.46779 * 59.99932 * 15 14 13 41 41 H 0.96998 * 120.00352 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9373 -0.0012 7 1 3.1795 3.6362 0.3865 8 6 4.2936 3.3336 -1.4339 9 16 4.9264 5.0389 -1.4152 10 6 6.1888 4.9567 -0.1082 11 6 5.5551 4.3370 1.1419 12 7 5.1118 2.9717 0.8505 13 6 4.8952 2.2128 2.0895 14 6 6.2423 1.9346 2.7593 15 6 6.0167 1.1437 4.0495 16 6 7.3437 0.8691 4.7089 17 1 8.2566 1.2237 4.2537 18 6 7.3921 0.1662 5.8940 19 7 6.2804 -0.2652 6.4487 20 14 9.0368 -0.1736 6.7119 21 1 9.3646 0.9351 7.6440 22 1 8.9597 -1.4494 7.4679 23 1 10.0940 -0.2763 5.6740 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8901 29 1 5.0641 2.6611 -1.8110 30 1 3.4108 3.2775 -2.0708 31 1 6.5445 5.9611 0.1211 32 1 7.0237 4.3394 -0.4399 33 1 4.6992 4.9377 1.4498 34 1 6.2893 4.3153 1.9473 35 1 4.2662 2.7923 2.7652 36 1 4.4037 1.2684 1.8559 37 1 6.8713 1.3550 2.0835 38 1 6.7338 2.8790 2.9930 39 1 5.3875 1.7228 4.7254 40 1 5.5254 0.1992 3.8154 41 1 6.3145 -0.7600 7.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = -87.187958 kcal Electronic energy + Delta-G solvation = -21307.303152 eV Core-core repulsion = 18120.433346 eV Total energy + Delta-G solvation = -3186.869806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88860 -38.32471 -36.44677 -34.10267 -32.51181 -31.88913 -31.51862 -29.59654 -26.07097 -25.35597 -23.39953 -22.90874 -21.98924 -20.29822 -19.96308 -18.14199 -17.12610 -16.67232 -16.27016 -15.86372 -15.54117 -15.10208 -14.67052 -14.48865 -14.25279 -13.88244 -13.62662 -13.34507 -13.06305 -12.92692 -12.51051 -12.22382 -12.12221 -11.88226 -11.81153 -11.65214 -11.54518 -11.24305 -10.84126 -10.76463 -10.55130 -10.52368 -10.30030 -9.86770 -9.58814 -9.35988 -9.07743 -8.41339 -8.33128 -7.87869 -5.98667 -4.00700 1.51463 2.03053 2.19137 2.62977 3.32815 3.38975 3.42926 3.67071 4.44481 4.47624 4.56636 4.70665 4.77784 4.82651 4.86170 5.03221 5.10576 5.12391 5.18110 5.37283 5.48907 5.52279 5.56864 5.60390 5.68069 5.77282 5.79455 5.87758 6.19716 6.35526 6.57651 6.62029 6.96250 7.12646 7.17270 7.68604 7.71387 7.83254 8.01275 8.44265 9.06124 9.63197 11.12900 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.004545 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.906699 B = 6158.842012 C = 7901.214950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.466 3.534 5 O -0.474 6.474 6 C 0.099 3.901 7 H 0.083 0.917 8 C -0.067 4.067 9 S -0.257 6.257 10 C -0.077 4.077 11 C 0.055 3.945 12 N -0.533 5.533 13 C 0.045 3.955 14 C -0.098 4.098 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.730 7.814 -15.834 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.359 6.359 6 C -0.013 4.013 7 H 0.100 0.900 8 C -0.216 4.216 9 S -0.030 6.030 10 C -0.225 4.225 11 C -0.074 4.074 12 N -0.260 5.260 13 C -0.081 4.081 14 C -0.136 4.136 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.531 8.067 -16.600 20.772 hybrid contribution 0.606 -1.085 1.710 2.114 sum -8.925 6.981 -14.890 18.711 Atomic orbital electron populations 1.21802 0.92540 1.03036 1.03463 1.23083 0.95376 0.79925 1.03019 1.86494 1.24320 1.32818 1.84079 1.23286 0.80754 0.92215 0.73228 1.90739 1.60085 1.42438 1.42594 1.21414 0.92973 0.91144 0.95758 0.89955 1.23395 1.05023 0.96647 0.96560 1.86836 1.48953 1.15007 1.52189 1.23616 0.98782 1.04948 0.95159 1.22346 1.00534 0.87410 0.97124 1.61230 1.30845 1.14677 1.19279 1.22605 1.00798 0.97284 0.87432 1.21609 0.93469 1.00167 0.98380 1.19063 0.97130 0.94838 0.90454 1.21224 0.93039 1.34705 1.06585 0.92646 1.25022 0.96362 0.95811 0.97272 1.69966 1.26486 1.38078 1.19094 0.86595 0.84278 0.77639 0.79503 1.20694 1.21238 1.19834 0.91597 0.90145 0.91351 0.91141 0.90721 0.87968 0.86999 0.87144 0.88471 0.93128 0.87776 0.94828 0.90066 0.92295 0.93418 0.96869 0.96636 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.67 10.22 -39.27 -0.40 -5.07 16 4 C 0.47 6.86 5.51 36.00 0.20 7.06 16 5 O -0.47 -8.50 14.86 -18.75 -0.28 -8.77 16 6 C 0.10 1.29 2.37 -68.97 -0.16 1.13 16 7 H 0.08 1.01 7.91 -51.93 -0.41 0.60 16 8 C -0.07 -0.76 5.95 37.29 0.22 -0.54 16 9 S -0.26 -2.88 22.40 -107.50 -2.41 -5.29 16 10 C -0.08 -0.82 6.69 37.28 0.25 -0.57 16 11 C 0.05 0.69 5.27 -3.93 -0.02 0.67 16 12 N -0.53 -7.99 4.15 -228.43 -0.95 -8.94 16 13 C 0.04 0.81 4.52 -3.83 -0.02 0.79 16 14 C -0.10 -2.09 5.18 -26.73 -0.14 -2.23 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 34 H 0.10 1.37 6.12 -51.93 -0.32 1.05 16 35 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.08 1.61 5.00 -51.93 -0.26 1.35 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -32.23 342.46 -9.53 -41.76 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.77 Total: -2.35 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 0.39 Total: -6.83 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.21 Total: -35.52 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.68 Total: -13.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.41 Total: -5.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.23 -9.53 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.424 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds