Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47203 * 2 1 4 4 C 1.34234 * 117.00137 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99958 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00066 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.41142 * 22.14938 * 6 4 3 8 8 C 1.53253 * 109.40752 * 262.31074 * 6 4 3 9 9 S 1.81903 * 108.50736 * 177.87843 * 8 6 4 10 10 C 1.81900 * 101.91386 * 51.30279 * 9 8 6 11 11 C 1.53241 * 108.50590 * 308.69700 * 10 9 8 12 12 N 1.46463 * 109.40726 * 141.91685 * 6 4 3 13 13 C 1.46903 * 111.00127 * 317.88377 * 12 6 4 14 14 C 1.52994 * 109.47211 * 164.19079 * 13 12 6 15 15 C 1.53008 * 109.46913 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46933 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00342 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47302 * 89.99875 * 20 18 16 22 22 H 1.48496 * 109.47697 * 210.00186 * 20 18 16 23 23 H 1.48505 * 109.46973 * 330.00467 * 20 18 16 24 24 H 1.08997 * 109.47322 * 59.99969 * 1 2 3 25 25 H 1.09002 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46744 * 299.99700 * 1 2 3 27 27 H 1.08999 * 109.47155 * 239.99954 * 2 1 3 28 28 H 1.09010 * 109.47163 * 119.99900 * 2 1 3 29 29 H 1.08997 * 109.63120 * 297.58506 * 8 6 4 30 30 H 1.09002 * 109.63121 * 58.17528 * 8 6 4 31 31 H 1.08992 * 109.63119 * 188.98971 * 10 9 8 32 32 H 1.09001 * 109.78688 * 68.49705 * 10 9 8 33 33 H 1.08998 * 109.40899 * 301.87976 * 11 10 9 34 34 H 1.09005 * 109.40511 * 182.11940 * 11 10 9 35 35 H 1.08998 * 109.47007 * 284.19284 * 13 12 6 36 36 H 1.09004 * 109.46946 * 44.18660 * 13 12 6 37 37 H 1.09003 * 109.47078 * 299.99597 * 14 13 12 38 38 H 1.08992 * 109.47503 * 60.00399 * 14 13 12 39 39 H 1.08998 * 109.47051 * 300.00049 * 15 14 13 40 40 H 1.09002 * 109.46779 * 59.99932 * 15 14 13 41 41 H 0.96998 * 120.00352 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9373 -0.0012 7 1 3.1795 3.6362 0.3865 8 6 4.2936 3.3336 -1.4339 9 16 4.9264 5.0389 -1.4152 10 6 6.1888 4.9567 -0.1082 11 6 5.5551 4.3370 1.1419 12 7 5.1118 2.9717 0.8505 13 6 4.8952 2.2128 2.0895 14 6 6.2423 1.9346 2.7593 15 6 6.0167 1.1437 4.0495 16 6 7.3437 0.8691 4.7089 17 1 8.2566 1.2237 4.2537 18 6 7.3921 0.1662 5.8940 19 7 6.2804 -0.2652 6.4487 20 14 9.0368 -0.1736 6.7119 21 1 9.3646 0.9351 7.6440 22 1 8.9597 -1.4494 7.4679 23 1 10.0940 -0.2763 5.6740 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8901 29 1 5.0641 2.6611 -1.8110 30 1 3.4108 3.2775 -2.0708 31 1 6.5445 5.9611 0.1211 32 1 7.0237 4.3394 -0.4399 33 1 4.6992 4.9377 1.4498 34 1 6.2893 4.3153 1.9473 35 1 4.2662 2.7923 2.7652 36 1 4.4037 1.2684 1.8559 37 1 6.8713 1.3550 2.0835 38 1 6.7338 2.8790 2.9930 39 1 5.3875 1.7228 4.7254 40 1 5.5254 0.1992 3.8154 41 1 6.3145 -0.7600 7.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608832245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = -106.431098 kcal Electronic energy + Delta-G solvation = -21308.137597 eV Core-core repulsion = 18120.433346 eV Total energy + Delta-G solvation = -3187.704251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04381 -39.47909 -37.62114 -36.00398 -34.06717 -33.18319 -32.36708 -31.08527 -27.87301 -26.37179 -24.74528 -24.20935 -23.11885 -21.86474 -21.29661 -19.25055 -18.54420 -18.20132 -17.67080 -16.87554 -16.73546 -16.48795 -16.22463 -15.87782 -15.45663 -14.95882 -14.63150 -14.49993 -14.40566 -14.17839 -13.71461 -13.61247 -13.41648 -13.21290 -12.93063 -12.79805 -12.67784 -12.64984 -12.50892 -12.44424 -12.29491 -11.71472 -11.59048 -11.45328 -11.28210 -11.17287 -10.78545 -10.56964 -9.60244 -8.76451 -8.22089 -6.33500 0.60556 0.93673 1.21684 1.38731 1.40645 1.51904 1.66665 2.38316 2.52302 3.11151 3.43568 3.56897 3.72100 3.82231 3.95245 3.97978 4.03279 4.14347 4.23237 4.24155 4.29834 4.45552 4.55132 4.61466 4.65222 4.77850 4.86294 4.89132 4.92425 4.95195 5.08637 5.17803 5.34613 5.46046 5.66195 5.70753 5.81876 5.85622 6.22282 6.58491 6.82566 7.35918 8.90151 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.004545 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.906699 B = 6158.842012 C = 7901.214950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.468 3.532 5 O -0.514 6.514 6 C 0.100 3.900 7 H 0.098 0.902 8 C -0.063 4.063 9 S -0.250 6.250 10 C -0.072 4.072 11 C 0.053 3.947 12 N -0.542 5.542 13 C 0.060 3.940 14 C -0.082 4.082 15 C 0.028 3.972 16 C -0.542 4.542 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.264 1.264 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.037 0.963 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.063 0.937 39 H -0.006 1.006 40 H -0.018 1.018 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 9.208 -16.614 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.308 3.692 5 O -0.401 6.401 6 C -0.011 4.011 7 H 0.115 0.885 8 C -0.212 4.212 9 S -0.022 6.022 10 C -0.220 4.220 11 C -0.075 4.075 12 N -0.269 5.269 13 C -0.067 4.067 14 C -0.120 4.120 15 C -0.010 4.010 16 C -0.580 4.580 17 H 0.079 0.921 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.188 1.188 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.012 0.988 40 H 0.000 1.000 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.260 9.490 -17.403 21.878 hybrid contribution 0.447 -1.531 1.933 2.506 sum -8.813 7.959 -15.470 19.502 Atomic orbital electron populations 1.21819 0.89789 1.04500 1.03943 1.23345 0.97509 0.78965 1.02432 1.86502 1.23369 1.33988 1.83481 1.23664 0.81024 0.92464 0.72007 1.90722 1.61015 1.43779 1.44593 1.21536 0.92507 0.90424 0.96602 0.88464 1.23380 1.05737 0.96727 0.95351 1.86854 1.48869 1.14281 1.52207 1.23620 0.98322 1.06054 0.94045 1.22433 1.00872 0.86182 0.98030 1.61109 1.32110 1.16014 1.17717 1.22215 0.98508 0.97158 0.88855 1.21325 0.95243 0.99669 0.95732 1.18942 0.95821 0.93690 0.92516 1.21648 0.93948 1.35123 1.07241 0.92119 1.26000 1.00556 0.95325 0.97935 1.70102 1.29055 1.38672 1.19640 0.85422 0.79191 0.77778 0.78514 1.19376 1.20758 1.18850 0.90348 0.88197 0.91560 0.90629 0.92544 0.88965 0.84828 0.84661 0.88987 0.91946 0.88438 0.94486 0.92096 0.93633 0.91875 0.98773 1.00000 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.29 71.98 0.74 -1.35 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.36 -9.15 10.22 -51.45 -0.53 -9.68 16 4 C 0.47 13.81 5.51 71.23 0.39 14.20 16 5 O -0.51 -19.03 14.86 21.95 0.33 -18.71 16 6 C 0.10 2.53 2.37 44.33 0.11 2.64 16 7 H 0.10 2.19 7.91 -2.39 -0.02 2.17 16 8 C -0.06 -1.32 5.95 72.07 0.43 -0.89 16 9 S -0.25 -4.99 22.40 -56.49 -1.27 -6.25 16 10 C -0.07 -1.38 6.69 72.06 0.48 -0.90 16 11 C 0.05 1.24 5.27 86.46 0.46 1.70 16 12 N -0.54 -15.92 4.15 -876.63 -3.64 -19.56 16 13 C 0.06 2.20 4.52 86.30 0.39 2.59 16 14 C -0.08 -3.55 5.18 30.59 0.16 -3.39 16 15 C 0.03 1.54 4.97 29.85 0.15 1.68 16 16 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 20 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.57 8.13 -2.39 -0.02 1.56 16 28 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.34 7.91 -2.39 -0.02 1.32 16 34 H 0.10 2.43 6.12 -2.38 -0.01 2.41 16 35 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 36 H 0.06 2.51 5.00 -2.39 -0.01 2.50 16 37 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.52 6.43 -2.39 -0.02 2.50 16 39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -70.47 342.46 2.65 -67.82 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.00 Total: 10.29 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.44 Total: -13.21 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.35 Total: -77.30 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.20 Total: -28.39 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -1.27 Total: -6.25 kcal Total: -70.47 2.65 -67.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds