Wall clock time and date at job start Tue Mar 31 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47325 * 2 1 4 4 C 1.46504 * 119.99798 * 270.00207 * 3 2 1 5 5 C 1.50693 * 109.47052 * 269.99583 * 4 3 2 6 6 H 1.07998 * 120.00182 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99963 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00211 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00070 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47198 * 59.99811 * 9 7 5 11 11 H 1.48497 * 109.47246 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47247 * 299.99615 * 9 7 5 13 13 C 1.34775 * 119.99561 * 89.99955 * 3 2 1 14 14 O 1.21287 * 119.99544 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00234 * 0.02562 * 13 3 2 16 16 C 1.50707 * 109.47152 * 179.97438 * 15 13 3 17 17 C 1.33998 * 124.91908 * 90.00040 * 16 15 13 18 18 C 1.46785 * 106.18190 * 180.02562 * 17 16 15 19 19 C 1.39405 * 134.36624 * 179.97438 * 18 17 16 20 20 C 1.36748 * 119.71388 * 179.97438 * 19 18 17 21 21 C 1.38738 * 120.41266 * 0.04525 * 20 19 18 22 22 C 1.37848 * 120.69043 * 359.97438 * 21 20 19 23 23 C 1.38937 * 119.81556 * 0.02562 * 22 21 20 24 24 O 1.34443 * 124.92313 * 270.02941 * 16 15 13 25 25 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46845 * 299.99944 * 1 2 3 27 27 H 1.08996 * 109.47455 * 59.99918 * 1 2 3 28 28 H 1.09001 * 109.47336 * 239.99924 * 2 1 3 29 29 H 1.09004 * 109.47173 * 120.00250 * 2 1 3 30 30 H 1.09001 * 109.46878 * 30.00173 * 4 3 2 31 31 H 1.08999 * 109.46410 * 149.99800 * 4 3 2 32 32 H 0.96992 * 120.00540 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47420 * 60.00271 * 15 13 3 34 34 H 1.08998 * 109.47192 * 299.99477 * 15 13 3 35 35 H 1.08001 * 126.91274 * 0.02562 * 17 16 15 36 36 H 1.07996 * 120.14611 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.79240 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.65346 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.09001 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9133 2.0964 -3.4171 10 1 6.1401 0.6397 -3.5954 11 1 6.1608 2.7965 -4.7031 12 1 6.8412 2.6188 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3193 2.2290 3.6178 17 6 1.4498 3.0651 4.2013 18 6 2.1961 3.7598 5.2573 19 6 1.8714 4.7320 6.2021 20 6 2.8286 5.1805 7.0697 21 6 4.1192 4.6746 7.0142 22 6 4.4588 3.7131 6.0865 23 6 3.5013 3.2439 5.1958 24 8 3.5257 2.3333 4.2020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 3.6753 3.5170 -4.4435 33 1 2.6229 0.4186 2.5299 34 1 0.9445 1.0114 2.5302 35 1 0.4092 3.2006 3.9460 36 1 0.8683 5.1294 6.2487 37 1 2.5783 5.9333 7.8023 38 1 4.8655 5.0372 7.7056 39 1 5.4666 3.3264 6.0517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:53 Heat of formation + Delta-G solvation = -8.889550 kcal Electronic energy + Delta-G solvation = -22013.615896 eV Core-core repulsion = 18694.697413 eV Total energy + Delta-G solvation = -3318.918483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35502 -39.12139 -37.81529 -35.36147 -33.28181 -32.74708 -31.28787 -30.38264 -30.12287 -27.98437 -26.44787 -23.25613 -23.04598 -22.61301 -21.71452 -20.94668 -18.50440 -17.30327 -16.90649 -16.62205 -16.38126 -15.84947 -15.58321 -15.06642 -14.65486 -14.28083 -14.01902 -13.58666 -13.43594 -13.22431 -13.01879 -12.80768 -12.36399 -12.24554 -12.03317 -12.01424 -11.71347 -11.54052 -11.19964 -10.94887 -10.91057 -10.74480 -10.52858 -10.14327 -10.04598 -9.66685 -9.05311 -8.57444 -8.43552 -8.04496 -7.71979 -6.04816 -4.09640 0.94036 1.39140 2.41339 2.77825 3.30789 3.32731 3.36584 3.41380 3.73566 3.91607 4.39626 4.45363 4.69955 4.90062 5.00163 5.11985 5.16842 5.23262 5.24861 5.27691 5.30275 5.46033 5.48893 5.59214 5.72848 5.77837 5.87584 5.98958 6.19523 6.24732 6.25410 6.41304 6.44107 6.50511 6.69669 7.02571 7.28938 7.42123 7.50537 7.91243 8.22256 8.34651 8.87288 9.02797 9.55440 11.03318 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.004063 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.107446 B = 6889.878648 C = 7833.956859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.595 5.595 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.529 6.529 15 C -0.073 4.073 16 C 0.073 3.927 17 C -0.204 4.204 18 C -0.123 4.123 19 C -0.074 4.074 20 C -0.140 4.140 21 C -0.101 4.101 22 C -0.105 4.105 23 C 0.054 3.946 24 O -0.187 6.187 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -3.880 18.432 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.406 6.406 15 C -0.113 4.113 16 C 0.025 3.975 17 C -0.223 4.223 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.158 4.158 21 C -0.120 4.120 22 C -0.124 4.124 23 C 0.007 3.993 24 O -0.088 6.088 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.840 -3.308 18.137 19.061 hybrid contribution 0.857 -0.121 -0.498 0.999 sum -3.983 -3.429 17.639 18.406 Atomic orbital electron populations 1.22234 0.96675 1.01540 1.02396 1.21474 0.93587 0.84108 1.02928 1.48242 1.63695 1.13295 1.07486 1.19283 0.96317 0.93649 0.77889 1.21399 0.96933 1.32053 1.06335 0.92495 1.24926 0.97859 0.94867 0.96373 1.69916 1.35747 1.33347 1.14364 0.86561 0.84801 0.78260 0.77833 1.20216 1.21146 1.20177 1.19942 0.79267 0.87040 0.84587 1.90733 1.45075 1.17858 1.86906 1.20452 1.04414 0.97424 0.89018 1.21578 0.82083 0.98976 0.94893 1.22107 1.00915 1.00196 0.99049 1.19940 0.93674 1.00048 0.98731 1.20266 0.99798 0.95307 0.93803 1.20721 0.93342 1.01462 1.00310 1.20858 0.96816 0.96259 0.98020 1.19943 0.98055 0.99272 0.95115 1.19620 0.95797 0.92568 0.91347 1.83950 1.32960 1.51255 1.40649 0.92028 0.93058 0.91931 0.89710 0.91630 0.94853 0.93877 0.92644 0.87226 0.86122 0.82621 0.85690 0.85603 0.85032 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.60 -12.26 2.46 -175.06 -0.43 -12.69 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.48 7.67 -10.99 -0.08 10.39 16 14 O -0.53 -13.74 15.61 5.55 0.09 -13.65 16 15 C -0.07 -1.08 4.76 -29.03 -0.14 -1.22 16 16 C 0.07 1.21 5.72 -35.80 -0.20 1.00 16 17 C -0.20 -3.13 11.01 -37.62 -0.41 -3.54 16 18 C -0.12 -1.89 6.40 -105.16 -0.67 -2.56 16 19 C -0.07 -0.92 10.05 -39.69 -0.40 -1.31 16 20 C -0.14 -1.50 9.98 -39.94 -0.40 -1.90 16 21 C -0.10 -1.09 10.01 -39.54 -0.40 -1.49 16 22 C -0.11 -1.38 10.07 -39.47 -0.40 -1.78 16 23 C 0.05 0.88 7.42 -38.48 -0.29 0.59 16 24 O -0.19 -3.34 10.58 3.91 0.04 -3.30 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 33 H 0.11 1.38 7.40 -51.93 -0.38 1.00 16 34 H 0.12 1.33 7.19 -51.93 -0.37 0.95 16 35 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -35.34 336.56 -8.19 -43.53 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.20 Total: -0.76 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.48 Total: -9.27 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.31 Total: -38.65 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.13 Total: -16.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.34 -8.19 -43.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.639 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds