Wall clock time and date at job start Tue Mar 31 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47325 * 2 1 4 4 C 1.46504 * 119.99798 * 270.00207 * 3 2 1 5 5 C 1.50693 * 109.47052 * 269.99583 * 4 3 2 6 6 H 1.07998 * 120.00182 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99963 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00211 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00070 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47198 * 59.99811 * 9 7 5 11 11 H 1.48497 * 109.47246 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47247 * 299.99615 * 9 7 5 13 13 C 1.34775 * 119.99561 * 89.99955 * 3 2 1 14 14 O 1.21287 * 119.99544 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00234 * 0.02562 * 13 3 2 16 16 C 1.50707 * 109.47152 * 179.97438 * 15 13 3 17 17 C 1.33998 * 124.91908 * 90.00040 * 16 15 13 18 18 C 1.46785 * 106.18190 * 180.02562 * 17 16 15 19 19 C 1.39405 * 134.36624 * 179.97438 * 18 17 16 20 20 C 1.36748 * 119.71388 * 179.97438 * 19 18 17 21 21 C 1.38738 * 120.41266 * 0.04525 * 20 19 18 22 22 C 1.37848 * 120.69043 * 359.97438 * 21 20 19 23 23 C 1.38937 * 119.81556 * 0.02562 * 22 21 20 24 24 O 1.34443 * 124.92313 * 270.02941 * 16 15 13 25 25 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46845 * 299.99944 * 1 2 3 27 27 H 1.08996 * 109.47455 * 59.99918 * 1 2 3 28 28 H 1.09001 * 109.47336 * 239.99924 * 2 1 3 29 29 H 1.09004 * 109.47173 * 120.00250 * 2 1 3 30 30 H 1.09001 * 109.46878 * 30.00173 * 4 3 2 31 31 H 1.08999 * 109.46410 * 149.99800 * 4 3 2 32 32 H 0.96992 * 120.00540 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47420 * 60.00271 * 15 13 3 34 34 H 1.08998 * 109.47192 * 299.99477 * 15 13 3 35 35 H 1.08001 * 126.91274 * 0.02562 * 17 16 15 36 36 H 1.07996 * 120.14611 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.79240 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.65346 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.09001 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9133 2.0964 -3.4171 10 1 6.1401 0.6397 -3.5954 11 1 6.1608 2.7965 -4.7031 12 1 6.8412 2.6188 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3193 2.2290 3.6178 17 6 1.4498 3.0651 4.2013 18 6 2.1961 3.7598 5.2573 19 6 1.8714 4.7320 6.2021 20 6 2.8286 5.1805 7.0697 21 6 4.1192 4.6746 7.0142 22 6 4.4588 3.7131 6.0865 23 6 3.5013 3.2439 5.1958 24 8 3.5257 2.3333 4.2020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 3.6753 3.5170 -4.4435 33 1 2.6229 0.4186 2.5299 34 1 0.9445 1.0114 2.5302 35 1 0.4092 3.2006 3.9460 36 1 0.8683 5.1294 6.2487 37 1 2.5783 5.9333 7.8023 38 1 4.8655 5.0372 7.7056 39 1 5.4666 3.3264 6.0517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:52 Heat of formation + Delta-G solvation = -30.767969 kcal Electronic energy + Delta-G solvation = -22014.564616 eV Core-core repulsion = 18694.697413 eV Total energy + Delta-G solvation = -3319.867203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.45908 -40.73023 -38.79238 -37.01164 -35.01888 -34.27115 -32.49072 -31.54216 -31.34399 -29.50266 -28.01743 -25.04963 -24.27237 -23.80262 -22.78661 -22.11189 -20.03800 -18.66961 -18.34441 -18.15677 -17.81946 -17.24584 -16.87016 -16.50486 -16.20761 -15.79480 -15.07891 -14.74652 -14.64514 -14.60937 -14.41029 -14.04437 -13.88046 -13.49632 -13.29002 -13.20923 -13.11922 -13.03911 -12.66914 -12.65698 -12.49880 -12.15810 -11.88945 -11.80979 -11.75041 -11.15050 -10.70624 -10.66213 -9.58525 -9.48169 -9.10961 -8.24622 -6.39419 -0.06505 0.40443 1.27315 1.34084 1.38606 1.45780 1.70377 1.76760 2.31203 2.46192 2.77950 3.04965 3.30852 3.67395 3.74584 4.03494 4.12027 4.13706 4.15711 4.21963 4.35767 4.45298 4.48037 4.56191 4.67104 4.76651 4.92203 4.97032 5.01396 5.07150 5.19781 5.25586 5.34695 5.43467 5.48646 5.50235 5.55657 5.77860 5.83060 6.04404 6.20539 6.66559 6.74782 7.25133 7.42317 8.82352 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.004063 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.107446 B = 6889.878648 C = 7833.956859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.599 5.599 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.595 6.595 15 C -0.054 4.054 16 C 0.041 3.959 17 C -0.204 4.204 18 C -0.152 4.152 19 C -0.083 4.083 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.126 4.126 23 C 0.017 3.983 24 O -0.214 6.214 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.026 0.974 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.135 0.865 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 -4.849 20.682 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.330 5.330 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.182 1.182 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.286 3.714 14 O -0.477 6.477 15 C -0.093 4.093 16 C -0.007 4.007 17 C -0.223 4.223 18 C -0.153 4.153 19 C -0.101 4.101 20 C -0.152 4.152 21 C -0.107 4.107 22 C -0.144 4.144 23 C -0.029 4.029 24 O -0.117 6.117 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.044 0.956 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.187 0.813 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.881 -4.338 20.401 21.421 hybrid contribution 0.840 0.272 -1.089 1.402 sum -4.041 -4.067 19.312 20.145 Atomic orbital electron populations 1.22177 0.94213 1.03730 1.01944 1.21866 0.95601 0.80912 1.04371 1.48257 1.63598 1.15282 1.05826 1.18697 0.95257 0.91459 0.80388 1.21706 0.98027 1.32153 1.06605 0.92934 1.25847 1.02363 0.94438 0.96431 1.70036 1.37799 1.34097 1.14800 0.85499 0.79004 0.79186 0.77323 1.18193 1.20156 1.20693 1.20990 0.77608 0.86501 0.86299 1.90691 1.47971 1.20970 1.88026 1.20447 1.07499 0.96847 0.84533 1.21912 0.82189 1.00601 0.95994 1.22501 1.01761 0.99316 0.98713 1.20303 0.93595 1.01477 0.99936 1.20672 1.01509 0.94583 0.93322 1.21236 0.92756 1.01249 0.99976 1.21392 0.97846 0.94414 0.97093 1.20363 0.98340 1.00243 0.95439 1.20237 0.97327 0.93287 0.92089 1.83882 1.33890 1.52293 1.41638 0.88413 0.91544 0.94414 0.90881 0.87582 0.95601 0.98780 0.92365 0.84696 0.81780 0.80688 0.83504 0.81825 0.81256 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.09 2.70 5.93 86.38 0.51 3.21 16 3 N -0.60 -25.16 2.46 -826.15 -2.03 -27.19 16 4 C 0.26 14.40 5.16 85.63 0.44 14.85 16 5 C -0.55 -32.17 9.39 25.60 0.24 -31.93 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 13 C 0.50 21.04 7.67 87.66 0.67 21.72 16 14 O -0.60 -32.67 15.61 -3.05 -0.05 -32.72 16 15 C -0.05 -1.54 4.76 29.10 0.14 -1.40 16 16 C 0.04 1.35 5.72 24.72 0.14 1.50 16 17 C -0.20 -6.28 11.01 23.54 0.26 -6.02 16 18 C -0.15 -4.66 6.40 -20.21 -0.13 -4.79 16 19 C -0.08 -1.92 10.05 22.20 0.22 -1.70 16 20 C -0.13 -2.45 9.98 22.04 0.22 -2.23 16 21 C -0.09 -1.69 10.01 22.30 0.22 -1.47 16 22 C -0.13 -3.21 10.07 22.34 0.23 -2.98 16 23 C 0.02 0.58 7.42 22.99 0.17 0.75 16 24 O -0.21 -7.94 10.58 -8.93 -0.09 -8.03 16 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.29 7.22 -2.39 -0.02 1.27 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.11 2.19 6.44 -2.39 -0.02 2.18 16 30 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 31 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.14 3.10 7.40 -2.39 -0.02 3.08 16 34 H 0.16 3.09 7.19 -2.39 -0.02 3.07 16 35 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -83.81 336.56 5.72 -78.09 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.05 Total: 11.21 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.54 Total: -12.45 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.74 Total: -83.96 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.14 Total: -40.75 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -83.81 5.72 -78.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.318 kcal (2) G-P(sol) polarization free energy of solvation -83.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds