Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36671 * 125.57048 * 2 1 4 4 C 1.34446 * 109.62805 * 180.02562 * 3 2 1 5 5 C 1.41633 * 107.84590 * 359.97438 * 4 3 2 6 6 C 1.37897 * 125.56775 * 180.02562 * 2 1 3 7 7 C 1.38938 * 133.34827 * 359.93953 * 6 2 1 8 8 C 1.38095 * 120.26632 * 180.02562 * 7 6 2 9 9 C 1.38237 * 120.82252 * 359.97438 * 8 7 6 10 10 C 1.39340 * 120.24934 * 0.02562 * 9 8 7 11 11 C 1.47232 * 120.32246 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.34782 * 119.99927 * 0.02562 * 11 10 9 14 14 C 1.45210 * 117.00074 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47083 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46866 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46860 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99756 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47411 * 59.99248 * 21 19 17 23 23 H 1.48497 * 109.47404 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46705 * 299.99372 * 21 19 17 25 25 H 1.08998 * 109.47028 * 89.97266 * 1 2 3 26 26 H 1.08998 * 109.47432 * 209.97744 * 1 2 3 27 27 H 1.09007 * 109.47364 * 329.97752 * 1 2 3 28 28 H 1.08005 * 125.19025 * 0.05759 * 3 2 1 29 29 H 1.08001 * 126.08110 * 179.97438 * 4 3 2 30 30 H 1.07988 * 119.86838 * 0.31434 * 7 6 2 31 31 H 1.08000 * 119.58580 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.87815 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.46845 * 300.00038 * 14 13 11 34 34 H 1.08997 * 109.46829 * 59.99483 * 14 13 11 35 35 H 1.08997 * 109.46834 * 299.99832 * 15 14 13 36 36 H 1.08994 * 109.47182 * 59.99977 * 15 14 13 37 37 H 1.09000 * 109.47017 * 300.00041 * 16 15 14 38 38 H 1.09005 * 109.46716 * 59.99897 * 16 15 14 39 39 H 0.96996 * 119.99972 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2600 1.1117 0.0000 4 6 3.5528 0.7424 -0.0006 5 6 3.5998 -0.6732 -0.0003 6 6 2.2671 -1.1217 -0.0005 7 6 2.0000 -2.4852 0.0000 8 6 3.0366 -3.3975 -0.0002 9 6 4.3526 -2.9743 -0.0014 10 6 4.6524 -1.6135 -0.0019 11 6 6.0534 -1.1610 -0.0038 12 8 6.3081 0.0274 -0.0046 13 8 7.0535 -2.0646 -0.0055 14 6 8.4100 -1.5466 -0.0078 15 6 9.4010 -2.7123 -0.0089 16 6 10.8304 -2.1664 -0.0120 17 6 11.8065 -3.3146 -0.0137 18 1 11.4437 -4.3318 -0.0123 19 6 13.1627 -3.0664 -0.0161 20 7 13.6045 -1.8276 -0.0173 21 14 14.3727 -4.4895 -0.0189 22 1 14.1578 -5.3196 -1.2313 23 1 15.7600 -3.9598 -0.0218 24 1 14.1623 -5.3205 1.1937 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 1.9041 2.1314 0.0009 29 1 4.4041 1.4070 -0.0011 30 1 0.9776 -2.8329 -0.0042 31 1 2.8164 -4.4548 -0.0003 32 1 5.1515 -3.7011 -0.0020 33 1 8.5646 -0.9369 -0.8981 34 1 8.5676 -0.9369 0.8818 35 1 9.2463 -3.3215 0.8815 36 1 9.2435 -3.3222 -0.8984 37 1 10.9848 -1.5574 -0.9027 38 1 10.9881 -1.5562 0.8773 39 1 14.5586 -1.6530 -0.0186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727025150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = -34.221700 kcal Electronic energy + Delta-G solvation = -21179.701352 eV Core-core repulsion = 17859.684384 eV Total energy + Delta-G solvation = -3320.016968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77347 -39.85244 -37.16529 -36.21011 -33.91525 -33.28535 -31.73712 -30.83164 -29.18874 -27.09721 -26.58167 -24.39186 -22.95560 -21.77444 -21.51012 -20.34851 -19.87487 -17.47834 -17.25533 -16.53639 -16.22199 -16.14255 -15.69830 -15.65108 -15.29467 -14.44910 -14.11112 -13.98482 -13.63928 -13.16946 -13.06007 -12.97424 -12.60613 -12.15928 -12.05024 -11.92773 -11.78171 -11.58645 -11.49159 -10.91026 -10.63122 -10.56019 -10.27594 -10.16103 -9.91887 -9.64016 -9.44552 -9.12863 -8.42193 -8.34390 -7.87613 -5.99359 -4.02262 0.42163 1.35804 2.46324 2.52054 2.75178 3.03203 3.35472 3.39540 3.42336 3.82315 4.33791 4.42839 4.47856 4.63668 4.71720 4.76073 4.89726 4.99004 5.09448 5.24264 5.36388 5.38694 5.58115 5.67727 5.73067 5.77172 5.95598 6.09912 6.23578 6.27308 6.44011 6.50416 6.61727 6.67808 6.90706 6.94244 7.00590 7.05919 7.65280 7.77115 7.99177 8.10041 8.40743 9.03874 9.61658 11.12099 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.041575 B = 0.002574 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.313844 B =10876.311013 C =11518.573487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.485 5.485 3 C 0.050 3.950 4 C -0.191 4.191 5 C -0.050 4.050 6 C 0.073 3.927 7 C -0.092 4.092 8 C -0.119 4.119 9 C -0.076 4.076 10 C -0.083 4.083 11 C 0.503 3.497 12 O -0.506 6.506 13 O -0.355 6.355 14 C 0.070 3.930 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.848 2.104 0.103 29.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.169 5.169 3 C -0.076 4.076 4 C -0.215 4.215 5 C -0.055 4.055 6 C -0.032 4.032 7 C -0.113 4.113 8 C -0.138 4.138 9 C -0.095 4.095 10 C -0.084 4.084 11 C 0.348 3.652 12 O -0.396 6.396 13 O -0.272 6.272 14 C -0.003 4.003 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.175 0.825 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.927 2.597 0.102 30.040 hybrid contribution 0.745 -0.492 -0.009 0.893 sum -29.182 2.105 0.093 29.258 Atomic orbital electron populations 1.21932 0.76841 1.04252 1.03045 1.43880 1.05815 1.04453 1.62706 1.22012 0.90196 0.91350 1.04002 1.20994 0.96460 0.93803 1.10292 1.17955 0.90846 0.93787 1.02928 1.18132 0.89599 0.88588 1.06929 1.20196 0.99713 0.89129 1.02240 1.20783 0.91663 0.99382 1.01987 1.21379 0.97325 0.94364 0.96473 1.18613 0.88802 0.93288 1.07745 1.20985 0.86384 0.84450 0.73340 1.90787 1.85270 1.17848 1.45713 1.86551 1.17242 1.39884 1.83483 1.23486 0.75912 0.98786 1.02150 1.21758 0.95178 0.95752 1.01932 1.19050 0.87830 0.96758 0.97677 1.21142 0.90929 0.92868 1.50976 0.92479 1.25033 0.98556 0.95667 0.95257 1.69959 1.14281 1.18621 1.50550 0.86603 0.80010 0.82420 0.78647 1.20195 1.21301 1.20192 0.91187 0.90097 0.89765 0.81148 0.82533 0.86009 0.84801 0.84013 0.91518 0.91525 0.92150 0.92152 0.96232 0.96234 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.08 59.85 0.66 1.01 16 2 N -0.49 -4.34 3.19 -121.80 -0.39 -4.73 16 3 C 0.05 0.47 11.33 -16.73 -0.19 0.28 16 4 C -0.19 -2.47 10.03 -39.63 -0.40 -2.87 16 5 C -0.05 -0.70 6.01 -106.60 -0.64 -1.34 16 6 C 0.07 0.82 6.82 -83.98 -0.57 0.25 16 7 C -0.09 -0.85 9.98 -39.37 -0.39 -1.25 16 8 C -0.12 -1.13 9.99 -39.63 -0.40 -1.53 16 9 C -0.08 -0.93 9.60 -39.17 -0.38 -1.30 16 10 C -0.08 -1.23 5.90 -104.73 -0.62 -1.85 16 11 C 0.50 8.89 7.89 34.38 0.27 9.16 16 12 O -0.51 -9.92 14.76 -19.29 -0.28 -10.20 16 13 O -0.35 -6.43 9.47 -40.72 -0.39 -6.82 16 14 C 0.07 1.36 5.48 37.16 0.20 1.56 16 15 C -0.11 -2.32 5.53 -26.73 -0.15 -2.47 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 21 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 28 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.16 2.17 7.00 -52.49 -0.37 1.80 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.62 7.60 -52.49 -0.40 1.22 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -34.20 338.82 -8.76 -42.96 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.38 Total: -3.13 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.14 Total: -13.53 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.35 Total: -31.19 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.67 Total: -17.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.20 -8.76 -42.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727025150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.739 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds