Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36671 * 125.57048 * 2 1 4 4 C 1.34446 * 109.62805 * 180.02562 * 3 2 1 5 5 C 1.41633 * 107.84590 * 359.97438 * 4 3 2 6 6 C 1.37897 * 125.56775 * 180.02562 * 2 1 3 7 7 C 1.38938 * 133.34827 * 359.93953 * 6 2 1 8 8 C 1.38095 * 120.26632 * 180.02562 * 7 6 2 9 9 C 1.38237 * 120.82252 * 359.97438 * 8 7 6 10 10 C 1.39340 * 120.24934 * 0.02562 * 9 8 7 11 11 C 1.47232 * 120.32246 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.34782 * 119.99927 * 0.02562 * 11 10 9 14 14 C 1.45210 * 117.00074 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47083 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46866 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46860 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99756 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47411 * 59.99248 * 21 19 17 23 23 H 1.48497 * 109.47404 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46705 * 299.99372 * 21 19 17 25 25 H 1.08998 * 109.47028 * 89.97266 * 1 2 3 26 26 H 1.08998 * 109.47432 * 209.97744 * 1 2 3 27 27 H 1.09007 * 109.47364 * 329.97752 * 1 2 3 28 28 H 1.08005 * 125.19025 * 0.05759 * 3 2 1 29 29 H 1.08001 * 126.08110 * 179.97438 * 4 3 2 30 30 H 1.07988 * 119.86838 * 0.31434 * 7 6 2 31 31 H 1.08000 * 119.58580 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.87815 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.46845 * 300.00038 * 14 13 11 34 34 H 1.08997 * 109.46829 * 59.99483 * 14 13 11 35 35 H 1.08997 * 109.46834 * 299.99832 * 15 14 13 36 36 H 1.08994 * 109.47182 * 59.99977 * 15 14 13 37 37 H 1.09000 * 109.47017 * 300.00041 * 16 15 14 38 38 H 1.09005 * 109.46716 * 59.99897 * 16 15 14 39 39 H 0.96996 * 119.99972 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2600 1.1117 0.0000 4 6 3.5528 0.7424 -0.0006 5 6 3.5998 -0.6732 -0.0003 6 6 2.2671 -1.1217 -0.0005 7 6 2.0000 -2.4852 0.0000 8 6 3.0366 -3.3975 -0.0002 9 6 4.3526 -2.9743 -0.0014 10 6 4.6524 -1.6135 -0.0019 11 6 6.0534 -1.1610 -0.0038 12 8 6.3081 0.0274 -0.0046 13 8 7.0535 -2.0646 -0.0055 14 6 8.4100 -1.5466 -0.0078 15 6 9.4010 -2.7123 -0.0089 16 6 10.8304 -2.1664 -0.0120 17 6 11.8065 -3.3146 -0.0137 18 1 11.4437 -4.3318 -0.0123 19 6 13.1627 -3.0664 -0.0161 20 7 13.6045 -1.8276 -0.0173 21 14 14.3727 -4.4895 -0.0189 22 1 14.1578 -5.3196 -1.2313 23 1 15.7600 -3.9598 -0.0218 24 1 14.1623 -5.3205 1.1937 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 1.9041 2.1314 0.0009 29 1 4.4041 1.4070 -0.0011 30 1 0.9776 -2.8329 -0.0042 31 1 2.8164 -4.4548 -0.0003 32 1 5.1515 -3.7011 -0.0020 33 1 8.5646 -0.9369 -0.8981 34 1 8.5676 -0.9369 0.8818 35 1 9.2463 -3.3215 0.8815 36 1 9.2435 -3.3222 -0.8984 37 1 10.9848 -1.5574 -0.9027 38 1 10.9881 -1.5562 0.8773 39 1 14.5586 -1.6530 -0.0186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727025150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -52.931526 kcal Electronic energy + Delta-G solvation = -21180.512670 eV Core-core repulsion = 17859.684384 eV Total energy + Delta-G solvation = -3320.828287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.58811 -41.22207 -38.08040 -37.63362 -35.92417 -34.01385 -33.69892 -31.76578 -30.01105 -28.98104 -27.17556 -25.82919 -24.51487 -22.63244 -22.53249 -22.16744 -20.98074 -18.74994 -18.45298 -18.08937 -17.64103 -17.34213 -16.85289 -16.48913 -16.30842 -16.07031 -15.62016 -14.91166 -14.82722 -14.21430 -14.01684 -13.96989 -13.79432 -13.68190 -13.60602 -13.13924 -12.79340 -12.67924 -12.61429 -12.52173 -12.35071 -12.23706 -12.06652 -11.70573 -11.41852 -11.37156 -11.20078 -10.76773 -10.56570 -9.22817 -8.69342 -8.21154 -6.33151 -0.52384 0.53556 1.41533 1.44449 1.45628 1.53087 1.61253 1.79543 1.88917 2.42159 2.87198 3.12346 3.55224 3.86702 3.91555 3.95500 3.98654 4.06284 4.18509 4.22167 4.38456 4.45066 4.51333 4.59428 4.76130 4.78093 4.78873 4.90314 4.96349 5.05795 5.09690 5.34690 5.42990 5.43581 5.49752 5.63037 5.66915 5.70922 5.79797 6.10907 6.19006 6.35343 6.71529 6.82527 7.36198 8.91072 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.041575 B = 0.002574 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.313844 B =10876.311013 C =11518.573487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.478 5.478 3 C 0.082 3.918 4 C -0.247 4.247 5 C -0.078 4.078 6 C 0.057 3.943 7 C -0.068 4.068 8 C -0.123 4.123 9 C -0.072 4.072 10 C -0.128 4.128 11 C 0.499 3.501 12 O -0.539 6.539 13 O -0.353 6.353 14 C 0.079 3.921 15 C -0.091 4.091 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.265 1.265 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.211 0.789 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.068 0.932 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.239 0.083 0.131 33.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.159 5.159 3 C -0.046 4.046 4 C -0.272 4.272 5 C -0.083 4.083 6 C -0.049 4.049 7 C -0.088 4.088 8 C -0.142 4.142 9 C -0.091 4.091 10 C -0.130 4.130 11 C 0.347 3.653 12 O -0.431 6.431 13 O -0.269 6.269 14 C 0.005 3.995 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.190 1.190 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.228 0.772 29 H 0.148 0.852 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -33.370 0.549 0.130 33.375 hybrid contribution 1.599 0.211 -0.019 1.613 sum -31.771 0.760 0.110 31.780 Atomic orbital electron populations 1.22343 0.73561 1.06307 1.04631 1.44245 1.07585 1.03387 1.60721 1.22493 0.89005 0.93101 0.99982 1.20957 0.97678 0.93718 1.14803 1.18277 0.92230 0.94256 1.03546 1.18400 0.88775 0.90117 1.07656 1.20706 1.01664 0.87961 0.98498 1.21174 0.90271 1.01361 1.01379 1.21572 0.99073 0.93094 0.95324 1.18618 0.86928 0.94964 1.12466 1.21709 0.87330 0.84032 0.72258 1.90758 1.85705 1.19018 1.47631 1.86531 1.16578 1.39987 1.83843 1.23142 0.76911 0.97809 1.01612 1.21453 0.92737 0.96061 1.02655 1.18934 0.90808 0.95974 0.95384 1.21588 0.91833 0.93719 1.50988 0.91533 1.26053 1.00797 0.98678 0.94558 1.70105 1.14868 1.21102 1.51395 0.85402 0.77032 0.78687 0.79337 1.18969 1.20920 1.18956 0.89739 0.88457 0.87496 0.77237 0.85170 0.81801 0.81168 0.83938 0.92156 0.92156 0.91315 0.91325 0.98586 0.98584 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.08 127.77 1.42 1.70 16 2 N -0.48 -7.12 3.19 -539.27 -1.72 -8.84 16 3 C 0.08 1.42 11.33 83.07 0.94 2.36 16 4 C -0.25 -6.75 10.03 22.24 0.22 -6.52 16 5 C -0.08 -2.24 6.01 -21.15 -0.13 -2.36 16 6 C 0.06 1.17 6.82 38.94 0.27 1.43 16 7 C -0.07 -1.01 9.98 22.40 0.22 -0.79 16 8 C -0.12 -1.98 9.99 22.24 0.22 -1.76 16 9 C -0.07 -1.71 9.60 22.54 0.22 -1.50 16 10 C -0.13 -3.99 5.90 -19.93 -0.12 -4.11 16 11 C 0.50 18.97 7.89 70.19 0.55 19.53 16 12 O -0.54 -23.15 14.76 19.73 0.29 -22.86 16 13 O -0.35 -13.46 9.47 -56.93 -0.54 -13.99 16 14 C 0.08 3.26 5.48 71.98 0.39 3.65 16 15 C -0.09 -4.03 5.53 30.60 0.17 -3.86 16 16 C 0.03 1.44 4.97 29.85 0.15 1.59 16 17 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 19 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 20 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 21 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 28 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.13 4.10 7.00 -2.91 -0.02 4.08 16 30 H 0.16 1.03 8.06 -2.92 -0.02 1.01 16 31 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.14 3.24 7.60 -2.91 -0.02 3.22 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -78.77 338.82 6.60 -72.16 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.04 Total: 6.26 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 5.22 Total: -21.68 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.44 Total: -66.72 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.25 Total: -36.86 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -78.77 6.60 -72.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727025150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.231 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds