Wall clock time and date at job start Tue Mar 31 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00144 * 2 1 4 4 C 1.50691 * 109.46842 * 66.04508 * 3 2 1 5 5 O 1.20831 * 120.00595 * 0.02562 * 4 3 2 6 6 O 1.34238 * 119.99781 * 180.02562 * 4 3 2 7 7 C 1.45198 * 116.99879 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46858 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47264 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47504 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00193 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00111 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47371 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47288 * 119.99777 * 14 12 10 17 17 H 1.48502 * 109.46992 * 239.99591 * 14 12 10 18 18 C 1.46899 * 111.00154 * 236.04391 * 2 1 3 19 19 H 1.09000 * 108.82939 * 62.48371 * 18 2 1 20 20 C 1.52333 * 108.86913 * 303.95740 * 18 2 1 21 21 C 1.54260 * 112.47388 * 239.24811 * 20 18 2 22 22 S 1.83763 * 102.67096 * 335.32779 * 21 20 18 23 23 C 1.54259 * 108.87132 * 180.87582 * 18 2 1 24 24 H 1.09001 * 109.46989 * 183.95759 * 1 2 3 25 25 H 1.08995 * 109.47233 * 303.95416 * 1 2 3 26 26 H 1.08999 * 109.47333 * 63.95563 * 1 2 3 27 27 H 1.09000 * 109.46949 * 186.04444 * 3 2 1 28 28 H 1.09004 * 109.46564 * 306.04378 * 3 2 1 29 29 H 1.08997 * 109.47103 * 299.99489 * 7 6 4 30 30 H 1.09001 * 109.47690 * 59.99821 * 7 6 4 31 31 H 1.09004 * 109.46930 * 299.99260 * 8 7 6 32 32 H 1.08995 * 109.47555 * 59.99327 * 8 7 6 33 33 H 1.09003 * 109.47365 * 299.99849 * 9 8 7 34 34 H 1.09001 * 109.47360 * 59.99713 * 9 8 7 35 35 H 0.96997 * 120.00586 * 180.02562 * 13 12 10 36 36 H 1.09002 * 108.86808 * 359.97438 * 20 18 2 37 37 H 1.09004 * 108.87242 * 118.50311 * 20 18 2 38 38 H 1.09007 * 110.78707 * 93.67041 * 21 20 18 39 39 H 1.09001 * 110.79108 * 217.12161 * 21 20 18 40 40 H 1.08996 * 110.78994 * 263.62238 * 23 18 2 41 41 H 1.08998 * 110.78338 * 27.08133 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0078 1.4476 2.1379 6 8 2.0165 3.3150 1.5223 7 6 1.6368 3.9018 2.7951 8 6 2.1529 5.3402 2.8677 9 6 1.7522 5.9588 4.2085 10 6 2.2610 7.3754 4.2803 11 1 2.8152 7.7928 3.4525 12 6 2.0201 8.1384 5.4032 13 7 1.3457 7.6301 6.4113 14 14 2.6514 9.8942 5.4924 15 1 3.3750 10.2244 4.2384 16 1 1.5062 10.8240 5.6631 17 1 3.5755 10.0298 6.6470 18 6 1.9955 -0.7660 -1.1375 19 1 1.6766 -0.2859 -2.0627 20 6 1.4203 -2.1758 -1.0906 21 6 2.5164 -3.2568 -0.9923 22 16 3.9776 -2.4171 -1.7248 23 6 3.5368 -0.7525 -1.0776 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8524 26 1 -0.3634 0.4512 -0.9233 27 1 3.0798 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 0.5506 3.9009 2.8859 30 1 2.0698 3.3185 3.6077 31 1 3.2391 5.3416 2.7767 32 1 1.7195 5.9232 2.0550 33 1 0.6660 5.9575 4.2991 34 1 2.1853 5.3759 5.0214 35 1 1.1759 8.1670 7.2011 36 1 0.7639 -2.2600 -0.2245 37 1 0.8353 -2.3482 -1.9940 38 1 2.7043 -3.5238 0.0478 39 1 2.2454 -4.1368 -1.5756 40 1 3.9421 0.0311 -1.7176 41 1 3.8829 -0.6326 -0.0510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772050750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:46 Heat of formation + Delta-G solvation = -85.616658 kcal Electronic energy + Delta-G solvation = -20266.696088 eV Core-core repulsion = 17079.894419 eV Total energy + Delta-G solvation = -3186.801669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49467 -38.80706 -36.42926 -34.02005 -33.94116 -31.74989 -30.20902 -29.10389 -26.96276 -25.44012 -24.43693 -23.06496 -20.77984 -20.33485 -20.05703 -17.89492 -17.06310 -16.96708 -16.42412 -16.36421 -15.77723 -15.51580 -14.92028 -14.48465 -14.20362 -14.11104 -13.87703 -13.50666 -12.90936 -12.74637 -12.40114 -12.24653 -12.15220 -12.03501 -11.87988 -11.83512 -11.58950 -11.45872 -10.99478 -10.66738 -10.64007 -10.41046 -10.38382 -10.18542 -9.74762 -9.52642 -9.16893 -8.81336 -8.40941 -8.10696 -6.05382 -4.08440 1.45677 1.86391 2.30540 2.61253 3.28784 3.36280 3.40433 3.54947 3.96802 4.37196 4.40096 4.41691 4.59729 4.72932 4.76081 4.83543 4.98449 5.03865 5.13023 5.18842 5.28218 5.30707 5.31511 5.38441 5.46717 5.55278 5.59981 5.82922 5.98543 6.36615 6.49435 6.51444 6.57291 6.83219 6.96319 7.58370 7.68994 7.92310 7.94070 8.34024 8.98082 9.56026 11.06115 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.042124 B = 0.002319 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.537063 B =12072.659555 C =12419.923012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.524 5.524 3 C 0.057 3.943 4 C 0.457 3.543 5 O -0.495 6.495 6 O -0.361 6.361 7 C 0.070 3.930 8 C -0.109 4.109 9 C 0.023 3.977 10 C -0.521 4.521 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.086 3.914 19 H 0.059 0.941 20 C -0.126 4.126 21 C -0.062 4.062 22 S -0.294 6.294 23 C -0.067 4.067 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -20.301 -17.928 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.250 5.250 3 C -0.072 4.072 4 C 0.298 3.702 5 O -0.382 6.382 6 O -0.277 6.277 7 C -0.003 4.003 8 C -0.146 4.146 9 C -0.014 4.014 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.024 4.024 19 H 0.076 0.924 20 C -0.165 4.165 21 C -0.210 4.210 22 S -0.068 6.068 23 C -0.215 4.215 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.135 0.865 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.995 -21.040 -17.722 27.527 hybrid contribution -0.956 1.756 0.284 2.019 sum 0.039 -19.284 -17.438 25.999 Atomic orbital electron populations 1.22717 0.85878 1.03388 1.01766 1.61864 1.09279 1.11481 1.42356 1.21628 1.03185 0.89097 0.93307 1.23262 0.77041 0.80808 0.89059 1.90636 1.36590 1.64850 1.46098 1.86478 1.72256 1.27312 1.41652 1.23498 1.00324 0.95612 0.80830 1.21766 1.00873 0.90104 1.01906 1.19058 0.97098 0.95472 0.89733 1.21207 1.35178 0.97514 1.02013 0.92377 1.25036 0.95206 0.98596 0.95688 1.69970 1.40247 1.36887 1.06245 0.86489 0.78630 0.84552 0.78058 1.19671 1.20969 1.20956 1.22267 0.92945 0.94756 0.92418 0.92355 1.22140 0.98650 0.91337 1.04348 1.24093 0.92939 1.00099 1.03904 1.88059 1.38443 1.08731 1.71609 1.24361 0.96147 0.95834 1.05197 0.90530 0.89110 0.95498 0.86511 0.90379 0.91585 0.91445 0.92119 0.92188 0.96254 0.96211 0.92928 0.88755 0.90328 0.88839 0.87708 0.87517 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.81 60.06 0.53 0.62 16 2 N -0.52 -4.88 4.26 -235.95 -1.00 -5.88 16 3 C 0.06 0.55 5.34 -4.98 -0.03 0.52 16 4 C 0.46 6.49 7.65 36.00 0.28 6.77 16 5 O -0.49 -8.36 14.08 -18.75 -0.26 -8.63 16 6 O -0.36 -5.77 10.22 -39.28 -0.40 -6.17 16 7 C 0.07 1.27 5.47 37.16 0.20 1.48 16 8 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 14 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.09 0.62 2.45 -67.40 -0.17 0.46 16 19 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 20 C -0.13 -0.78 5.46 -26.41 -0.14 -0.93 16 21 C -0.06 -0.40 7.44 37.82 0.28 -0.12 16 22 S -0.29 -2.56 23.26 -107.50 -2.50 -5.06 16 23 C -0.07 -0.50 5.48 37.82 0.21 -0.29 16 24 H 0.08 0.58 6.00 -51.93 -0.31 0.27 16 25 H 0.09 1.06 5.83 -51.93 -0.30 0.76 16 26 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.12 0.93 6.38 -51.93 -0.33 0.60 16 28 H 0.08 0.63 8.12 -51.93 -0.42 0.20 16 29 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.09 0.62 5.84 -51.93 -0.30 0.32 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.10 0.87 7.71 -51.93 -0.40 0.47 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -31.68 342.71 -9.51 -41.19 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -6.68 Total: -4.22 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.46 Total: -6.84 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.27 Total: -31.90 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.67 Total: -14.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.50 Total: -5.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.68 -9.51 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772050750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.423 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds