Wall clock time and date at job start Tue Mar 31 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00144 * 2 1 4 4 C 1.50691 * 109.46842 * 66.04508 * 3 2 1 5 5 O 1.20831 * 120.00595 * 0.02562 * 4 3 2 6 6 O 1.34238 * 119.99781 * 180.02562 * 4 3 2 7 7 C 1.45198 * 116.99879 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46858 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47264 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47504 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00193 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00111 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47371 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47288 * 119.99777 * 14 12 10 17 17 H 1.48502 * 109.46992 * 239.99591 * 14 12 10 18 18 C 1.46899 * 111.00154 * 236.04391 * 2 1 3 19 19 H 1.09000 * 108.82939 * 62.48371 * 18 2 1 20 20 C 1.52333 * 108.86913 * 303.95740 * 18 2 1 21 21 C 1.54260 * 112.47388 * 239.24811 * 20 18 2 22 22 S 1.83763 * 102.67096 * 335.32779 * 21 20 18 23 23 C 1.54259 * 108.87132 * 180.87582 * 18 2 1 24 24 H 1.09001 * 109.46989 * 183.95759 * 1 2 3 25 25 H 1.08995 * 109.47233 * 303.95416 * 1 2 3 26 26 H 1.08999 * 109.47333 * 63.95563 * 1 2 3 27 27 H 1.09000 * 109.46949 * 186.04444 * 3 2 1 28 28 H 1.09004 * 109.46564 * 306.04378 * 3 2 1 29 29 H 1.08997 * 109.47103 * 299.99489 * 7 6 4 30 30 H 1.09001 * 109.47690 * 59.99821 * 7 6 4 31 31 H 1.09004 * 109.46930 * 299.99260 * 8 7 6 32 32 H 1.08995 * 109.47555 * 59.99327 * 8 7 6 33 33 H 1.09003 * 109.47365 * 299.99849 * 9 8 7 34 34 H 1.09001 * 109.47360 * 59.99713 * 9 8 7 35 35 H 0.96997 * 120.00586 * 180.02562 * 13 12 10 36 36 H 1.09002 * 108.86808 * 359.97438 * 20 18 2 37 37 H 1.09004 * 108.87242 * 118.50311 * 20 18 2 38 38 H 1.09007 * 110.78707 * 93.67041 * 21 20 18 39 39 H 1.09001 * 110.79108 * 217.12161 * 21 20 18 40 40 H 1.08996 * 110.78994 * 263.62238 * 23 18 2 41 41 H 1.08998 * 110.78338 * 27.08133 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0078 1.4476 2.1379 6 8 2.0165 3.3150 1.5223 7 6 1.6368 3.9018 2.7951 8 6 2.1529 5.3402 2.8677 9 6 1.7522 5.9588 4.2085 10 6 2.2610 7.3754 4.2803 11 1 2.8152 7.7928 3.4525 12 6 2.0201 8.1384 5.4032 13 7 1.3457 7.6301 6.4113 14 14 2.6514 9.8942 5.4924 15 1 3.3750 10.2244 4.2384 16 1 1.5062 10.8240 5.6631 17 1 3.5755 10.0298 6.6470 18 6 1.9955 -0.7660 -1.1375 19 1 1.6766 -0.2859 -2.0627 20 6 1.4203 -2.1758 -1.0906 21 6 2.5164 -3.2568 -0.9923 22 16 3.9776 -2.4171 -1.7248 23 6 3.5368 -0.7525 -1.0776 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8524 26 1 -0.3634 0.4512 -0.9233 27 1 3.0798 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 0.5506 3.9009 2.8859 30 1 2.0698 3.3185 3.6077 31 1 3.2391 5.3416 2.7767 32 1 1.7195 5.9232 2.0550 33 1 0.6660 5.9575 4.2991 34 1 2.1853 5.3759 5.0214 35 1 1.1759 8.1670 7.2011 36 1 0.7639 -2.2600 -0.2245 37 1 0.8353 -2.3482 -1.9940 38 1 2.7043 -3.5238 0.0478 39 1 2.2454 -4.1368 -1.5756 40 1 3.9421 0.0311 -1.7176 41 1 3.8829 -0.6326 -0.0510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772050750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:46 Heat of formation + Delta-G solvation = -104.221869 kcal Electronic energy + Delta-G solvation = -20267.502871 eV Core-core repulsion = 17079.894419 eV Total energy + Delta-G solvation = -3187.608452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62382 -39.58284 -37.70003 -35.93500 -34.60041 -33.68727 -30.81291 -30.06747 -28.66702 -26.07805 -25.56819 -24.51686 -22.16832 -21.81835 -20.67995 -18.91492 -18.52533 -17.98698 -17.70147 -17.42406 -16.88869 -16.49811 -16.19672 -15.89130 -15.27233 -15.00431 -14.60796 -14.41718 -14.13958 -14.00170 -13.83936 -13.65410 -13.21355 -12.94275 -12.78734 -12.75782 -12.58172 -12.49967 -12.36717 -12.22448 -12.04103 -11.95830 -11.71899 -11.40209 -11.35587 -11.18738 -10.86296 -10.58682 -9.47171 -8.76702 -8.22498 -6.33974 0.87691 1.18095 1.30949 1.41258 1.41556 1.52469 1.56419 2.40844 2.81175 3.11525 3.41596 3.62563 3.83917 3.92321 3.99473 4.06729 4.10464 4.15976 4.22456 4.24359 4.41473 4.45846 4.54228 4.55851 4.71718 4.79666 4.80423 4.83395 4.87071 4.98385 5.07642 5.15040 5.43622 5.54491 5.63248 5.74546 5.79781 5.92146 6.18653 6.75589 6.82736 7.35705 8.89968 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.042124 B = 0.002319 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.537063 B =12072.659555 C =12419.923012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.539 5.539 3 C 0.064 3.936 4 C 0.454 3.546 5 O -0.525 6.525 6 O -0.360 6.360 7 C 0.081 3.919 8 C -0.094 4.094 9 C 0.025 3.975 10 C -0.541 4.541 11 H 0.065 0.935 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.259 1.259 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.090 3.910 19 H 0.073 0.927 20 C -0.124 4.124 21 C -0.052 4.052 22 S -0.340 6.340 23 C -0.059 4.059 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.137 0.863 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.067 0.933 33 H -0.004 1.004 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -20.171 -19.940 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.266 5.266 3 C -0.064 4.064 4 C 0.297 3.703 5 O -0.414 6.414 6 O -0.277 6.277 7 C 0.007 3.993 8 C -0.131 4.131 9 C -0.012 4.012 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.794 3.206 15 H -0.183 1.183 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.019 4.019 19 H 0.091 0.909 20 C -0.163 4.163 21 C -0.200 4.200 22 S -0.115 6.115 23 C -0.207 4.207 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.155 0.845 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.460 -20.927 -19.761 28.820 hybrid contribution -1.123 1.614 0.911 2.167 sum 0.337 -19.313 -18.850 26.990 Atomic orbital electron populations 1.22649 0.85846 1.03855 1.01139 1.61814 1.09481 1.11402 1.43855 1.21746 1.04525 0.89267 0.90879 1.24273 0.75945 0.79794 0.90284 1.90635 1.37988 1.65196 1.47540 1.86466 1.72467 1.28643 1.40078 1.23071 0.99775 0.94435 0.81985 1.21450 1.01220 0.91373 0.99070 1.18942 0.95365 0.95022 0.91885 1.21655 1.35221 0.98676 1.02382 0.91633 1.26021 0.95314 1.03440 0.95255 1.70102 1.41525 1.38831 1.06978 0.85332 0.78138 0.78651 0.78525 1.18321 1.20396 1.20440 1.22324 0.92531 0.95012 0.92058 0.90907 1.22151 0.98443 0.90653 1.05040 1.24156 0.91553 1.00562 1.03711 1.88230 1.40532 1.10623 1.72095 1.24371 0.96405 0.95204 1.04769 0.89255 0.92163 0.93927 0.84500 0.87880 0.92060 0.92177 0.91470 0.91418 0.98528 0.98588 0.92682 0.89015 0.88686 0.89190 0.86160 0.86034 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.81 127.69 1.13 1.33 16 2 N -0.54 -8.92 4.26 -900.41 -3.83 -12.75 16 3 C 0.06 1.09 5.34 85.55 0.46 1.55 16 4 C 0.45 12.46 7.65 71.23 0.54 13.00 16 5 O -0.53 -17.81 14.08 21.95 0.31 -17.50 16 6 O -0.36 -11.16 10.22 -51.49 -0.53 -11.68 16 7 C 0.08 2.95 5.47 71.98 0.39 3.34 16 8 C -0.09 -3.82 5.53 30.59 0.17 -3.65 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 11 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 12 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 14 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 C 0.09 1.06 2.45 45.12 0.11 1.17 16 19 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 20 C -0.12 -1.24 5.46 30.80 0.17 -1.07 16 21 C -0.05 -0.58 7.44 72.41 0.54 -0.04 16 22 S -0.34 -5.47 23.26 -56.49 -1.31 -6.79 16 23 C -0.06 -0.77 5.48 72.41 0.40 -0.37 16 24 H 0.09 1.19 6.00 -2.39 -0.01 1.18 16 25 H 0.06 1.38 5.83 -2.39 -0.01 1.37 16 26 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.14 1.79 6.38 -2.39 -0.02 1.77 16 28 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 29 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 30 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 31 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 36 H 0.09 1.01 5.84 -2.39 -0.01 0.99 16 37 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.09 1.43 7.71 -2.39 -0.02 1.41 16 Total: -1.00 -68.86 342.71 2.70 -66.16 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.00 Total: 6.44 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.75 Total: -13.24 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -3.55 Total: -69.28 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.22 Total: -29.18 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.31 Total: -6.79 kcal Total: -68.86 2.70 -66.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772050750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.062 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds