Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47275 * 2 1 4 4 C 1.50696 * 109.46909 * 239.99586 * 2 1 3 5 5 H 1.08003 * 120.00034 * 239.99518 * 4 2 1 6 6 C 1.37874 * 120.00039 * 60.00526 * 4 2 1 7 7 N 1.31518 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46924 * 60.00122 * 8 6 4 10 10 H 1.48503 * 109.46821 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47277 * 299.99947 * 8 6 4 12 12 O 1.45199 * 109.46658 * 119.99723 * 2 1 3 13 13 C 1.34236 * 117.00109 * 269.99935 * 12 2 1 14 14 O 1.20827 * 119.99688 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99879 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46914 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47294 * 180.02562 * 16 15 13 18 18 C 1.38837 * 119.73079 * 270.30225 * 17 16 15 19 19 C 1.37749 * 120.66086 * 180.29214 * 18 17 16 20 20 C 1.39129 * 119.78305 * 359.70025 * 19 18 17 21 21 N 1.37688 * 133.51022 * 180.02562 * 20 19 18 22 22 H 0.96998 * 125.06434 * 359.97438 * 21 20 19 23 23 C 1.36827 * 109.87172 * 179.97438 * 21 20 19 24 24 C 1.34241 * 109.93459 * 0.02562 * 23 21 20 25 25 C 1.40672 * 119.32989 * 359.97438 * 20 19 18 26 26 C 1.36617 * 119.73760 * 89.99398 * 17 16 15 27 27 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46949 * 300.00436 * 1 2 3 29 29 H 1.09006 * 109.46968 * 60.00301 * 1 2 3 30 30 H 0.97001 * 119.99396 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47445 * 59.99846 * 15 13 12 32 32 H 1.09004 * 109.46793 * 299.99521 * 15 13 12 33 33 H 1.09004 * 109.47311 * 59.99298 * 16 15 13 34 34 H 1.09003 * 109.46897 * 299.99948 * 16 15 13 35 35 H 1.07993 * 119.67037 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.11220 * 179.67520 * 19 18 17 37 37 H 1.07999 * 125.03284 * 180.02562 * 23 21 20 38 38 H 1.07997 * 126.50525 * 179.97438 * 24 23 21 39 39 H 1.08002 * 120.12126 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8279 -2.5201 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1194 -4.0076 12 8 2.0139 -0.6844 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9973 1.2518 2.2506 15 6 2.7191 -0.5769 3.5493 16 6 2.8642 0.4894 4.6369 17 6 3.3669 -0.1515 5.9048 18 6 2.4603 -0.6511 6.8301 19 6 2.8985 -1.2353 7.9981 20 6 4.2628 -1.3324 8.2527 21 7 4.9980 -1.8470 9.2969 22 1 4.6245 -2.2602 10.0910 23 6 6.3340 -1.6886 9.0476 24 6 6.5098 -1.0808 7.8637 25 6 5.1774 -0.8307 7.3088 26 6 4.7110 -0.2418 6.1317 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 0.7089 1.1611 -3.4845 31 1 3.6881 -1.0399 3.3634 32 1 2.0101 -1.3371 3.8775 33 1 1.8953 0.9529 4.8229 34 1 3.5733 1.2492 4.3084 35 1 1.4009 -0.5765 6.6345 36 1 2.1853 -1.6163 8.7141 37 1 7.1294 -2.0056 9.7059 38 1 7.4543 -0.8252 7.4067 39 1 5.4105 0.1450 5.4053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776089528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = -46.272193 kcal Electronic energy + Delta-G solvation = -21205.948500 eV Core-core repulsion = 17885.408984 eV Total energy + Delta-G solvation = -3320.539516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34743 -39.48878 -37.65024 -35.71206 -33.26725 -33.09563 -31.97216 -29.74312 -28.90284 -28.70039 -25.30336 -24.73734 -22.76178 -21.61977 -21.07148 -20.31338 -19.36250 -18.20528 -16.94609 -16.54966 -16.26344 -15.60960 -15.30014 -14.76832 -14.63311 -14.41176 -14.25973 -13.83463 -13.38977 -13.10071 -12.92647 -12.71726 -12.55244 -11.99442 -11.76334 -11.48035 -11.22779 -11.20236 -11.03317 -10.99809 -10.80943 -10.70661 -10.34766 -10.24770 -9.88508 -9.55535 -9.45951 -8.86700 -8.45319 -8.24268 -7.85232 -6.14820 -4.21634 1.01899 1.49525 2.54876 2.93028 3.10051 3.28867 3.32028 3.34714 3.67152 3.90299 4.37018 4.55302 4.66128 4.94316 4.97792 5.16189 5.17981 5.23751 5.27136 5.38770 5.49768 5.61964 5.76568 5.83202 5.93712 5.99757 6.08804 6.29068 6.31540 6.55061 6.61443 6.69245 6.71744 6.93017 6.96532 7.04038 7.24055 7.30959 7.64238 7.77782 7.99527 8.19288 8.70146 8.94468 9.43761 10.92575 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.002672 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.937985 B =10477.705509 C =10926.512829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.358 6.358 13 C 0.450 3.550 14 O -0.524 6.524 15 C -0.110 4.110 16 C -0.064 4.064 17 C -0.102 4.102 18 C -0.089 4.089 19 C -0.131 4.131 20 C 0.089 3.911 21 N -0.599 5.599 22 H 0.413 0.587 23 C 0.044 3.956 24 C -0.203 4.203 25 C -0.109 4.109 26 C -0.066 4.066 27 H 0.036 0.964 28 H 0.016 0.984 29 H 0.099 0.901 30 H 0.266 0.734 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -5.254 23.608 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.275 6.275 13 C 0.293 3.707 14 O -0.415 6.415 15 C -0.148 4.148 16 C -0.102 4.102 17 C -0.103 4.103 18 C -0.108 4.108 19 C -0.152 4.152 20 C -0.017 4.017 21 N -0.203 5.203 22 H 0.249 0.751 23 C -0.082 4.082 24 C -0.228 4.228 25 C -0.113 4.113 26 C -0.085 4.085 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.105 -4.845 23.501 25.024 hybrid contribution 0.083 -0.560 -0.429 0.710 sum 7.188 -5.405 23.072 24.763 Atomic orbital electron populations 1.22156 0.97641 1.00039 1.01366 1.20603 0.91354 0.93908 0.77941 0.93600 1.21007 1.32453 1.13447 0.88987 0.91387 1.24893 0.94961 0.95115 0.99061 1.69897 1.36083 1.22580 1.24215 0.86331 0.79216 0.79527 0.81029 1.19960 1.21057 1.19986 1.86486 1.75771 1.43753 1.21460 1.23429 0.74894 0.86038 0.86308 1.90592 1.48977 1.17049 1.84876 1.21329 1.03710 0.99363 0.90370 1.20342 1.02958 0.96642 0.90233 1.19370 0.93023 1.01203 0.96745 1.20783 0.99581 0.97605 0.92862 1.19985 0.91322 1.04832 0.99067 1.18285 0.93064 1.00772 0.89626 1.41774 1.05497 1.53728 1.19264 0.75050 1.21784 0.84849 1.02783 0.98750 1.21735 0.96324 1.08126 0.96665 1.19209 0.92945 1.03599 0.95558 1.20216 0.94917 0.97993 0.95325 0.94490 0.96535 0.88299 0.92384 0.88245 0.88346 0.90158 0.90128 0.85496 0.86367 0.81477 0.83674 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.65 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.90 8.90 -34.44 -0.31 -15.21 16 5 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 O -0.36 -8.72 9.86 -39.27 -0.39 -9.10 16 13 C 0.45 9.44 7.93 36.01 0.29 9.72 16 14 O -0.52 -12.39 15.20 -18.75 -0.29 -12.68 16 15 C -0.11 -1.64 5.79 -27.88 -0.16 -1.80 16 16 C -0.06 -0.86 4.61 -27.88 -0.13 -0.99 16 17 C -0.10 -1.24 5.10 -104.99 -0.54 -1.77 16 18 C -0.09 -0.97 9.66 -39.54 -0.38 -1.35 16 19 C -0.13 -1.33 10.08 -39.43 -0.40 -1.72 16 20 C 0.09 0.95 7.28 -83.99 -0.61 0.34 16 21 N -0.60 -4.67 6.07 -10.65 -0.06 -4.73 16 22 H 0.41 1.91 8.96 -40.82 -0.37 1.55 16 23 C 0.04 0.33 11.81 -16.73 -0.20 0.13 16 24 C -0.20 -1.95 11.08 -37.67 -0.42 -2.36 16 25 C -0.11 -1.28 6.37 -105.13 -0.67 -1.95 16 26 C -0.07 -0.79 9.67 -39.65 -0.38 -1.18 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 34 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -33.35 336.03 -9.03 -42.37 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.24 Total: 2.12 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.72 Total: -14.35 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.56 Total: -29.75 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.67 Total: -21.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.35 -9.03 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776089528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.898 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds