Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47275 * 2 1 4 4 C 1.50696 * 109.46909 * 239.99586 * 2 1 3 5 5 H 1.08003 * 120.00034 * 239.99518 * 4 2 1 6 6 C 1.37874 * 120.00039 * 60.00526 * 4 2 1 7 7 N 1.31518 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46924 * 60.00122 * 8 6 4 10 10 H 1.48503 * 109.46821 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47277 * 299.99947 * 8 6 4 12 12 O 1.45199 * 109.46658 * 119.99723 * 2 1 3 13 13 C 1.34236 * 117.00109 * 269.99935 * 12 2 1 14 14 O 1.20827 * 119.99688 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99879 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46914 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47294 * 180.02562 * 16 15 13 18 18 C 1.38837 * 119.73079 * 270.30225 * 17 16 15 19 19 C 1.37749 * 120.66086 * 180.29214 * 18 17 16 20 20 C 1.39129 * 119.78305 * 359.70025 * 19 18 17 21 21 N 1.37688 * 133.51022 * 180.02562 * 20 19 18 22 22 H 0.96998 * 125.06434 * 359.97438 * 21 20 19 23 23 C 1.36827 * 109.87172 * 179.97438 * 21 20 19 24 24 C 1.34241 * 109.93459 * 0.02562 * 23 21 20 25 25 C 1.40672 * 119.32989 * 359.97438 * 20 19 18 26 26 C 1.36617 * 119.73760 * 89.99398 * 17 16 15 27 27 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46949 * 300.00436 * 1 2 3 29 29 H 1.09006 * 109.46968 * 60.00301 * 1 2 3 30 30 H 0.97001 * 119.99396 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47445 * 59.99846 * 15 13 12 32 32 H 1.09004 * 109.46793 * 299.99521 * 15 13 12 33 33 H 1.09004 * 109.47311 * 59.99298 * 16 15 13 34 34 H 1.09003 * 109.46897 * 299.99948 * 16 15 13 35 35 H 1.07993 * 119.67037 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.11220 * 179.67520 * 19 18 17 37 37 H 1.07999 * 125.03284 * 180.02562 * 23 21 20 38 38 H 1.07997 * 126.50525 * 179.97438 * 24 23 21 39 39 H 1.08002 * 120.12126 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8279 -2.5201 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1194 -4.0076 12 8 2.0139 -0.6844 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9973 1.2518 2.2506 15 6 2.7191 -0.5769 3.5493 16 6 2.8642 0.4894 4.6369 17 6 3.3669 -0.1515 5.9048 18 6 2.4603 -0.6511 6.8301 19 6 2.8985 -1.2353 7.9981 20 6 4.2628 -1.3324 8.2527 21 7 4.9980 -1.8470 9.2969 22 1 4.6245 -2.2602 10.0910 23 6 6.3340 -1.6886 9.0476 24 6 6.5098 -1.0808 7.8637 25 6 5.1774 -0.8307 7.3088 26 6 4.7110 -0.2418 6.1317 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 0.7089 1.1611 -3.4845 31 1 3.6881 -1.0399 3.3634 32 1 2.0101 -1.3371 3.8775 33 1 1.8953 0.9529 4.8229 34 1 3.5733 1.2492 4.3084 35 1 1.4009 -0.5765 6.6345 36 1 2.1853 -1.6163 8.7141 37 1 7.1294 -2.0056 9.7059 38 1 7.4543 -0.8252 7.4067 39 1 5.4105 0.1450 5.4053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776089528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = -64.478301 kcal Electronic energy + Delta-G solvation = -21206.737976 eV Core-core repulsion = 17885.408984 eV Total energy + Delta-G solvation = -3321.328993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06097 -41.26520 -38.57681 -37.54478 -35.31795 -34.25792 -32.73682 -31.71766 -29.86083 -29.57716 -27.45744 -25.95584 -23.67169 -23.20658 -21.94766 -21.36045 -20.93325 -18.90850 -18.82605 -18.45324 -17.26145 -17.20609 -16.89127 -16.29424 -15.82065 -15.32559 -15.23344 -14.79005 -14.73792 -14.42177 -14.18190 -13.91504 -13.72542 -13.41261 -13.37594 -13.14062 -12.99171 -12.81458 -12.40770 -12.36248 -12.16745 -12.13598 -12.08252 -11.65997 -11.54918 -11.30103 -10.98369 -10.63399 -10.58777 -9.02992 -8.58144 -8.28090 -6.45331 0.25476 0.64948 1.38662 1.42383 1.46308 1.54396 1.88665 2.08353 2.34057 2.43838 2.96426 3.02240 3.76075 3.84318 4.01368 4.08851 4.17627 4.29577 4.35807 4.49286 4.54362 4.58604 4.64385 4.72285 4.79370 4.85215 4.94751 4.98709 5.09752 5.18950 5.21052 5.24366 5.49207 5.51601 5.64383 5.79465 5.85349 5.87324 5.94008 6.12369 6.27075 6.60275 6.78944 7.00648 7.27128 8.79405 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.002672 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.937985 B =10477.705509 C =10926.512829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.268 1.268 12 O -0.366 6.366 13 C 0.444 3.556 14 O -0.555 6.555 15 C -0.095 4.095 16 C -0.055 4.055 17 C -0.110 4.110 18 C -0.103 4.103 19 C -0.127 4.127 20 C 0.074 3.926 21 N -0.589 5.589 22 H 0.430 0.570 23 C 0.065 3.935 24 C -0.238 4.238 25 C -0.134 4.134 26 C -0.083 4.083 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.271 0.729 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.210 0.790 38 H 0.154 0.846 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -7.224 25.208 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.085 0.915 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.193 1.193 12 O -0.283 6.283 13 C 0.290 3.710 14 O -0.447 6.447 15 C -0.132 4.132 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.148 4.148 20 C -0.034 4.034 21 N -0.194 5.194 22 H 0.269 0.731 23 C -0.061 4.061 24 C -0.262 4.262 25 C -0.139 4.139 26 C -0.102 4.102 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.226 0.774 38 H 0.171 0.829 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.838 -6.825 25.147 27.210 hybrid contribution -0.089 0.081 -0.777 0.787 sum 7.749 -6.744 24.370 26.446 Atomic orbital electron populations 1.21977 0.96731 1.00393 1.00838 1.20326 0.92083 0.92025 0.79361 0.97594 1.21292 1.33492 1.13951 0.90061 0.91457 1.25862 0.94710 0.95690 1.02212 1.70019 1.36556 1.23673 1.25280 0.85218 0.78789 0.78624 0.76679 1.18790 1.20167 1.19307 1.86483 1.76208 1.43945 1.21661 1.24645 0.73742 0.85830 0.86804 1.90574 1.50268 1.18589 1.85271 1.21455 1.04676 0.99901 0.87215 1.20218 1.02481 0.95986 0.90561 1.19219 0.93337 1.02148 0.96409 1.20960 1.00073 0.98007 0.93124 1.20265 0.91724 1.03763 0.99027 1.18501 0.93389 1.01141 0.90368 1.41860 1.05541 1.52840 1.19124 0.73099 1.22424 0.85380 1.00163 0.98147 1.22012 0.96017 1.10154 0.98061 1.19571 0.94564 1.03945 0.95808 1.20309 0.95035 0.98814 0.96016 0.93525 0.95686 0.90117 0.91976 0.86623 0.85855 0.90574 0.91401 0.84203 0.83807 0.77367 0.82850 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.19 2.56 29.85 0.08 12.27 16 3 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 4 C -0.55 -32.00 8.90 25.60 0.23 -31.77 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 6 C 0.01 0.84 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.62 11.32 21.45 0.24 -53.37 16 8 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 12 O -0.37 -18.15 9.86 -51.47 -0.51 -18.66 16 13 C 0.44 18.98 7.93 71.24 0.56 19.55 16 14 O -0.56 -27.19 15.20 21.96 0.33 -26.86 16 15 C -0.10 -2.79 5.79 29.85 0.17 -2.62 16 16 C -0.05 -1.49 4.61 29.85 0.14 -1.35 16 17 C -0.11 -2.63 5.10 -20.10 -0.10 -2.73 16 18 C -0.10 -2.11 9.66 22.30 0.22 -1.90 16 19 C -0.13 -2.32 10.08 22.37 0.23 -2.10 16 20 C 0.07 1.44 7.28 39.03 0.28 1.72 16 21 N -0.59 -7.46 6.07 -187.60 -1.14 -8.60 16 22 H 0.43 2.50 8.96 -92.71 -0.83 1.67 16 23 C 0.07 0.77 11.81 83.00 0.98 1.75 16 24 C -0.24 -4.22 11.08 23.51 0.26 -3.96 16 25 C -0.13 -3.06 6.37 -20.20 -0.13 -3.19 16 26 C -0.08 -2.02 9.67 22.23 0.22 -1.81 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 4.56 6.07 -2.38 -0.01 4.54 16 30 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.12 3.05 8.14 -2.38 -0.02 3.04 16 33 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16 34 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.21 0.59 8.06 -2.91 -0.02 0.56 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -73.62 336.03 5.44 -68.18 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.23 Total: 15.48 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 4.25 Total: -21.66 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.90 Total: -61.97 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.17 Total: -45.52 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -73.62 5.44 -68.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776089528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.701 kcal (2) G-P(sol) polarization free energy of solvation -73.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds