Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42904 * 109.46825 * 208.00532 * 3 2 1 5 5 C 1.42906 * 114.00109 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47307 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.47103 * 64.99912 * 6 5 4 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 4.38441 * 5.44413 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47679 * 88.00248 * 3 2 1 27 27 H 1.09007 * 109.47435 * 327.99653 * 3 2 1 28 28 H 1.08997 * 109.46938 * 59.99657 * 5 4 3 29 29 H 1.09001 * 109.46991 * 299.99571 * 5 4 3 30 30 H 1.09001 * 109.47212 * 305.00334 * 6 5 4 31 31 H 1.08991 * 109.47261 * 185.00167 * 6 5 4 32 32 H 0.97000 * 119.99705 * 0.02562 * 7 6 5 33 33 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 34 34 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 35 35 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 36 36 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 37 37 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 39 39 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1217 1.1904 0.6326 5 6 4.5462 1.2905 0.6862 6 6 4.9401 2.5962 1.3797 7 7 4.5014 2.5586 2.7770 8 6 4.7414 3.6085 3.5872 9 8 5.3209 4.5843 3.1596 10 6 4.2906 3.5695 5.0246 11 6 4.6784 4.8557 5.7078 12 6 5.8557 4.9336 6.4167 13 6 6.2116 6.1134 7.0515 14 6 5.3916 7.2289 6.9748 15 6 4.2132 7.1756 6.2665 16 6 3.8417 5.9831 5.6179 17 6 2.6334 5.9169 4.8864 18 1 2.5285 5.2057 4.0805 19 6 1.5737 6.7729 5.2068 20 7 1.4692 7.2603 6.4163 21 14 0.3084 7.2196 3.9073 22 1 -0.7040 8.1331 4.4955 23 1 0.9838 7.8948 2.7702 24 1 -0.3611 5.9855 3.4233 25 1 -1.0502 -0.0003 -0.0004 26 1 3.0093 -0.0350 -1.0269 27 1 3.0097 -0.8707 0.5447 28 1 4.9494 1.2814 -0.3264 29 1 4.9490 0.4459 1.2453 30 1 4.4642 3.4352 0.8720 31 1 6.0228 2.7154 1.3419 32 1 4.0382 1.7779 3.1191 33 1 4.7672 2.7309 5.5322 34 1 3.2080 3.4496 5.0628 35 1 6.5022 4.0711 6.4826 36 1 7.1347 6.1641 7.6097 37 1 5.6790 8.1430 7.4729 38 1 3.5763 8.0458 6.2077 39 1 2.0754 6.9633 7.1129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784608002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -18.925515 kcal Electronic energy + Delta-G solvation = -21712.546142 eV Core-core repulsion = 18393.192467 eV Total energy + Delta-G solvation = -3319.353676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.32492 -38.36203 -37.40246 -34.56512 -33.77404 -33.26119 -31.78918 -29.69327 -29.13348 -27.17892 -26.38129 -24.81288 -22.67259 -20.86829 -20.61533 -19.49172 -18.69770 -17.67160 -17.09016 -16.56939 -16.34320 -15.51802 -15.05355 -14.88010 -14.72090 -14.10669 -14.07268 -13.59604 -13.24540 -13.05467 -12.55288 -12.39514 -12.23621 -11.95641 -11.71629 -11.59396 -11.15204 -11.03137 -10.79768 -10.76614 -10.74484 -10.39583 -10.32171 -9.87572 -9.57949 -9.30555 -9.14228 -8.88112 -8.66673 -7.48317 -7.43107 -7.05004 -4.34132 2.25202 2.56375 2.82520 2.92418 3.22131 3.35432 3.38471 3.44015 3.62378 3.72204 4.09301 4.25349 4.66441 4.76724 4.91303 4.93342 5.06469 5.13563 5.45928 5.61863 5.66358 5.75776 5.89056 6.02492 6.15728 6.24101 6.41222 6.43219 6.75026 6.77716 6.87385 7.07385 7.28590 7.33029 7.50121 7.75245 7.90829 7.93697 7.99849 8.03583 8.28881 8.42595 8.86824 8.91271 9.00419 10.14526 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.004751 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.706233 B = 5892.597091 C = 7549.318930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.197 4.197 3 C 0.173 3.827 4 O -0.377 6.377 5 C 0.052 3.948 6 C 0.123 3.877 7 N -0.741 5.741 8 C 0.515 3.485 9 O -0.524 6.524 10 C -0.070 4.070 11 C -0.183 4.183 12 C -0.069 4.069 13 C -0.254 4.254 14 C -0.087 4.087 15 C -0.216 4.216 16 C 0.116 3.884 17 C -0.516 4.516 18 H 0.073 0.927 19 C 0.041 3.959 20 N -0.800 5.800 21 Si 1.059 2.941 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.222 0.778 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -14.823 -10.049 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.197 4.197 3 C 0.097 3.903 4 O -0.296 6.296 5 C -0.025 4.025 6 C -0.001 4.001 7 N -0.396 5.396 8 C 0.302 3.698 9 O -0.398 6.398 10 C -0.110 4.110 11 C -0.185 4.185 12 C -0.088 4.088 13 C -0.274 4.274 14 C -0.105 4.105 15 C -0.236 4.236 16 C 0.113 3.887 17 C -0.544 4.544 18 H 0.091 0.909 19 C -0.181 4.181 20 N -0.423 5.423 21 Si 0.883 3.117 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.202 1.202 25 H 0.239 0.761 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.248 -12.993 -10.515 16.716 hybrid contribution 1.216 -1.514 0.251 1.958 sum 0.968 -14.507 -10.265 17.798 Atomic orbital electron populations 1.25018 0.95959 0.97988 0.99791 1.22510 0.93936 1.02051 1.01245 1.19055 0.84889 0.88568 0.97746 1.88074 1.21276 1.40377 1.79894 1.22842 0.81029 0.98262 1.00342 1.21251 0.99718 0.96461 0.82673 1.46042 1.62275 1.20698 1.10559 1.21191 0.78367 0.81645 0.88577 1.90678 1.40435 1.32111 1.76537 1.20240 1.02691 0.97717 0.90318 1.19018 0.99032 0.93756 1.06714 1.20352 0.94969 0.96232 0.97233 1.20250 1.01466 0.95100 1.10543 1.20595 0.94979 0.96498 0.98448 1.21136 0.98365 0.97903 1.06167 1.17394 0.92185 0.89772 0.89310 1.20460 0.98311 1.19446 1.16161 0.90915 1.26914 0.99772 0.92056 0.99327 1.70452 1.34817 1.35054 1.01993 0.83731 0.75378 0.77570 0.75034 1.19912 1.20034 1.20174 0.76134 0.90901 0.90849 0.91531 0.92293 0.90829 0.90216 0.76824 0.90697 0.88644 0.89642 0.89504 0.89431 0.87778 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.20 -2.17 13.73 -37.13 -0.51 -2.68 16 3 C 0.17 1.55 6.41 34.37 0.22 1.77 16 4 O -0.38 -4.42 10.25 -35.23 -0.36 -4.78 16 5 C 0.05 0.48 6.07 37.16 0.23 0.70 16 6 C 0.12 1.61 6.06 -4.04 -0.02 1.58 16 7 N -0.74 -11.30 5.50 -60.30 -0.33 -11.64 16 8 C 0.51 10.43 7.46 -10.99 -0.08 10.35 16 9 O -0.52 -12.98 16.03 5.56 0.09 -12.89 16 10 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 11 C -0.18 -4.52 4.43 -103.91 -0.46 -4.98 16 12 C -0.07 -1.63 9.66 -39.66 -0.38 -2.02 16 13 C -0.25 -6.00 10.05 -39.29 -0.39 -6.39 16 14 C -0.09 -2.14 10.02 -39.66 -0.40 -2.53 16 15 C -0.22 -5.85 7.95 -38.87 -0.31 -6.16 16 16 C 0.12 3.17 5.30 -106.82 -0.57 2.61 16 17 C -0.52 -14.05 8.08 -37.74 -0.30 -14.35 16 18 H 0.07 1.97 6.73 -52.49 -0.35 1.62 16 19 C 0.04 1.07 4.94 -17.34 -0.09 0.99 16 20 N -0.80 -21.70 12.31 55.55 0.68 -21.02 16 21 Si 1.06 22.83 30.00 -169.99 -5.10 17.73 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 25 H 0.22 1.37 7.80 -54.08 -0.42 0.95 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 5.05 8.47 -40.82 -0.35 4.70 16 33 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 34 H 0.10 1.95 7.06 -51.93 -0.37 1.58 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.10 2.89 6.49 -52.49 -0.34 2.55 16 39 H 0.30 8.29 6.68 -40.82 -0.27 8.02 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -33.77 344.33 -7.60 -41.38 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.12 Total: 9.83 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -2.65 Total: -23.79 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.35 Total: -32.65 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.27 Total: -17.67 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.77 -7.60 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784608002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.453 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds