Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42904 * 109.46825 * 208.00532 * 3 2 1 5 5 C 1.42906 * 114.00109 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47307 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.47103 * 64.99912 * 6 5 4 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 4.38441 * 5.44413 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47679 * 88.00248 * 3 2 1 27 27 H 1.09007 * 109.47435 * 327.99653 * 3 2 1 28 28 H 1.08997 * 109.46938 * 59.99657 * 5 4 3 29 29 H 1.09001 * 109.46991 * 299.99571 * 5 4 3 30 30 H 1.09001 * 109.47212 * 305.00334 * 6 5 4 31 31 H 1.08991 * 109.47261 * 185.00167 * 6 5 4 32 32 H 0.97000 * 119.99705 * 0.02562 * 7 6 5 33 33 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 34 34 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 35 35 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 36 36 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 37 37 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 39 39 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1217 1.1904 0.6326 5 6 4.5462 1.2905 0.6862 6 6 4.9401 2.5962 1.3797 7 7 4.5014 2.5586 2.7770 8 6 4.7414 3.6085 3.5872 9 8 5.3209 4.5843 3.1596 10 6 4.2906 3.5695 5.0246 11 6 4.6784 4.8557 5.7078 12 6 5.8557 4.9336 6.4167 13 6 6.2116 6.1134 7.0515 14 6 5.3916 7.2289 6.9748 15 6 4.2132 7.1756 6.2665 16 6 3.8417 5.9831 5.6179 17 6 2.6334 5.9169 4.8864 18 1 2.5285 5.2057 4.0805 19 6 1.5737 6.7729 5.2068 20 7 1.4692 7.2603 6.4163 21 14 0.3084 7.2196 3.9073 22 1 -0.7040 8.1331 4.4955 23 1 0.9838 7.8948 2.7702 24 1 -0.3611 5.9855 3.4233 25 1 -1.0502 -0.0003 -0.0004 26 1 3.0093 -0.0350 -1.0269 27 1 3.0097 -0.8707 0.5447 28 1 4.9494 1.2814 -0.3264 29 1 4.9490 0.4459 1.2453 30 1 4.4642 3.4352 0.8720 31 1 6.0228 2.7154 1.3419 32 1 4.0382 1.7779 3.1191 33 1 4.7672 2.7309 5.5322 34 1 3.2080 3.4496 5.0628 35 1 6.5022 4.0711 6.4826 36 1 7.1347 6.1641 7.6097 37 1 5.6790 8.1430 7.4729 38 1 3.5763 8.0458 6.2077 39 1 2.0754 6.9633 7.1129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784608002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -40.912897 kcal Electronic energy + Delta-G solvation = -21713.499587 eV Core-core repulsion = 18393.192467 eV Total energy + Delta-G solvation = -3320.307120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85559 -39.50067 -38.97107 -35.82204 -35.71915 -34.10422 -33.54127 -31.11341 -30.80617 -28.45159 -27.52422 -26.72901 -23.70630 -22.81866 -22.24041 -21.16449 -19.63307 -19.38546 -17.95021 -17.82646 -17.42162 -16.83314 -16.63647 -16.43245 -15.88421 -15.72262 -15.67385 -15.29502 -14.58286 -14.31807 -14.11267 -13.84716 -13.62035 -13.47070 -13.30248 -12.98822 -12.74505 -12.60033 -12.47501 -12.23662 -11.99553 -11.54242 -11.49724 -11.47302 -11.21818 -10.85729 -10.80781 -10.51479 -10.02586 -9.43610 -9.42346 -9.05475 -6.39380 0.92072 0.99309 1.44979 1.51174 1.60571 1.74543 1.80839 1.82876 2.29603 2.37614 2.71740 2.94397 3.57390 3.60663 3.97841 4.10061 4.20251 4.30612 4.32684 4.40036 4.46631 4.50393 4.53683 4.58967 4.67157 4.72747 4.89206 5.00292 5.03932 5.08898 5.33317 5.50434 5.53815 5.80760 5.84970 5.99743 6.06022 6.15450 6.30414 6.46422 6.61065 6.65836 6.87578 7.02150 7.42282 8.08306 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.004751 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.706233 B = 5892.597091 C = 7549.318930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.236 4.236 3 C 0.168 3.832 4 O -0.411 6.411 5 C 0.060 3.940 6 C 0.117 3.883 7 N -0.720 5.720 8 C 0.515 3.485 9 O -0.578 6.578 10 C -0.070 4.070 11 C -0.189 4.189 12 C -0.080 4.080 13 C -0.250 4.250 14 C -0.097 4.097 15 C -0.246 4.246 16 C 0.085 3.915 17 C -0.542 4.542 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.819 5.819 21 Si 1.104 2.896 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.256 1.256 25 H 0.247 0.753 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.413 0.587 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -17.209 -10.805 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.236 4.236 3 C 0.093 3.907 4 O -0.331 6.331 5 C -0.016 4.016 6 C -0.006 4.006 7 N -0.374 5.374 8 C 0.303 3.697 9 O -0.457 6.457 10 C -0.110 4.110 11 C -0.191 4.191 12 C -0.098 4.098 13 C -0.268 4.268 14 C -0.116 4.116 15 C -0.265 4.265 16 C 0.083 3.917 17 C -0.571 4.571 18 H 0.082 0.918 19 C -0.211 4.211 20 N -0.443 5.443 21 Si 0.923 3.077 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.181 1.181 25 H 0.263 0.737 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.249 0.751 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.494 -15.448 -11.270 19.129 hybrid contribution 1.116 -0.862 0.516 1.501 sum 1.609 -16.310 -10.754 19.603 Atomic orbital electron populations 1.25860 0.97049 0.97146 0.99132 1.23323 0.95329 1.02905 1.02024 1.19330 0.83925 0.88269 0.99136 1.88008 1.22506 1.42024 1.80602 1.22850 0.80316 0.96606 1.01787 1.21438 1.00009 0.98039 0.81134 1.45862 1.60756 1.19696 1.11111 1.21089 0.77851 0.81888 0.88887 1.90656 1.43302 1.34295 1.77421 1.20268 1.02720 0.97111 0.90852 1.19524 0.98827 0.94630 1.06095 1.20819 0.94988 0.97590 0.96450 1.20730 1.02064 0.94518 1.09536 1.20904 0.94344 0.98159 0.98147 1.21148 0.99530 0.97563 1.08264 1.17778 0.93117 0.90880 0.89968 1.20525 0.99162 1.20682 1.16703 0.91771 1.28161 1.01205 0.91447 1.00251 1.70550 1.35102 1.36298 1.02305 0.83168 0.73604 0.78267 0.72704 1.19006 1.20092 1.18067 0.73651 0.88816 0.88532 0.88736 0.89505 0.93636 0.89402 0.75060 0.86665 0.89168 0.86068 0.86157 0.87190 0.89893 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 19.25 74.32 1.43 -1.77 16 2 C -0.24 -4.85 13.73 31.12 0.43 -4.42 16 3 C 0.17 2.60 6.41 70.18 0.45 3.05 16 4 O -0.41 -8.79 10.25 -148.98 -1.53 -10.31 16 5 C 0.06 0.93 6.07 71.98 0.44 1.37 16 6 C 0.12 2.91 6.06 86.38 0.52 3.43 16 7 N -0.72 -20.89 5.50 -463.07 -2.55 -23.44 16 8 C 0.52 20.55 7.46 87.66 0.65 21.20 16 9 O -0.58 -28.98 16.03 -3.04 -0.05 -29.02 16 10 C -0.07 -2.77 5.18 29.10 0.15 -2.62 16 11 C -0.19 -9.27 4.43 -19.40 -0.09 -9.36 16 12 C -0.08 -3.62 9.66 22.22 0.21 -3.41 16 13 C -0.25 -11.29 10.05 22.46 0.23 -11.06 16 14 C -0.10 -4.78 10.02 22.22 0.22 -4.56 16 15 C -0.25 -13.73 7.95 22.73 0.18 -13.54 16 16 C 0.09 4.78 5.30 -21.29 -0.11 4.66 16 17 C -0.54 -30.59 8.08 23.46 0.19 -30.40 16 18 H 0.06 3.61 6.73 -2.91 -0.02 3.59 16 19 C 0.01 0.30 4.94 85.25 0.42 0.72 16 20 N -0.82 -46.15 12.31 21.82 0.27 -45.89 16 21 Si 1.10 46.89 30.00 68.60 2.06 48.95 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H 0.25 2.62 7.80 -4.41 -0.03 2.58 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.41 9.51 8.47 -92.71 -0.79 8.73 16 33 H 0.12 3.54 8.05 -2.39 -0.02 3.52 16 34 H 0.09 3.67 7.06 -2.39 -0.02 3.65 16 35 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 36 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.08 4.86 6.49 -2.91 -0.02 4.85 16 39 H 0.28 16.58 6.68 -92.71 -0.62 15.96 16 Total: -1.00 -76.76 344.33 3.95 -72.81 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.42 Total: 33.61 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 5.33 Total: -46.70 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -2.28 Total: -69.33 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.58 Total: -39.34 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.06 Total: 48.95 kcal Total: -76.76 3.95 -72.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784608002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.896 kcal (2) G-P(sol) polarization free energy of solvation -76.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds