Wall clock time and date at job start Tue Mar 31 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46849 * 110.98969 * 2 1 4 4 C 1.53033 * 109.51689 * 174.15145 * 3 2 1 5 5 C 1.53125 * 109.27655 * 59.18581 * 4 3 2 6 6 C 1.53113 * 109.16067 * 302.35028 * 5 4 3 7 7 C 1.46853 * 110.99612 * 235.80354 * 2 1 3 8 8 H 1.09005 * 109.46421 * 65.83450 * 7 2 1 9 9 C 1.50693 * 109.46451 * 305.84959 * 7 2 1 10 10 O 1.20829 * 120.00013 * 339.98181 * 9 7 2 11 11 O 1.34222 * 120.00135 * 159.98453 * 9 7 2 12 12 C 1.45200 * 117.00094 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47378 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46997 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.46638 * 180.02562 * 14 13 12 16 16 C 1.76206 * 99.99929 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99847 * 180.02562 * 16 15 14 19 19 N 1.31638 * 119.99705 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00469 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46939 * 90.00148 * 20 18 16 22 22 H 1.48496 * 109.47561 * 210.00294 * 20 18 16 23 23 H 1.48498 * 109.46932 * 330.00626 * 20 18 16 24 24 H 1.09006 * 109.46888 * 184.19806 * 1 2 3 25 25 H 1.08993 * 109.47206 * 304.19454 * 1 2 3 26 26 H 1.09004 * 109.47439 * 64.20096 * 1 2 3 27 27 H 1.09003 * 109.46241 * 54.14570 * 3 2 1 28 28 H 1.09000 * 109.47202 * 294.17104 * 3 2 1 29 29 H 1.09002 * 109.50634 * 299.25317 * 4 3 2 30 30 H 1.08997 * 109.50642 * 179.12593 * 4 3 2 31 31 H 1.09005 * 109.52498 * 182.43983 * 5 4 3 32 32 H 1.09002 * 109.52218 * 62.25210 * 5 4 3 33 33 H 1.09001 * 109.50291 * 297.70864 * 6 5 4 34 34 H 1.09003 * 109.53499 * 177.61778 * 6 5 4 35 35 H 1.09000 * 109.47147 * 59.99859 * 12 11 9 36 36 H 1.08996 * 109.47221 * 300.00104 * 12 11 9 37 37 H 1.09000 * 109.46866 * 59.99970 * 13 12 11 38 38 H 1.09001 * 109.46611 * 300.00087 * 13 12 11 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 12 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 12 41 41 H 0.96996 * 119.99710 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5178 1.3344 0.1470 5 6 4.1187 0.5373 -1.0142 6 6 3.5181 -0.8711 -1.0209 7 6 1.9952 -0.7706 -1.1340 8 1 1.7325 -0.2703 -2.0662 9 6 1.3982 -2.1542 -1.1211 10 8 0.9187 -2.5958 -0.1037 11 8 1.3993 -2.8960 -2.2397 12 6 0.8069 -4.2189 -2.1539 13 6 0.8993 -4.9085 -3.5166 14 6 0.2746 -6.3022 -3.4263 15 16 0.3847 -7.1182 -5.0381 16 6 -0.3849 -8.6565 -4.6555 17 1 -0.7501 -8.8438 -3.6566 18 6 -0.5207 -9.6277 -5.6377 19 7 -1.0952 -10.7771 -5.3517 20 14 0.1116 -9.3040 -7.3653 21 1 1.5238 -9.7519 -7.4675 22 1 -0.7171 -10.0524 -8.3442 23 1 0.0311 -7.8503 -7.6576 24 1 -0.3633 -1.0250 0.0752 25 1 -0.3633 0.5775 0.8500 26 1 -0.3634 0.4473 -0.9252 27 1 1.5631 1.9258 0.8330 28 1 1.7323 1.8610 -0.9376 29 1 3.7810 0.8568 1.0908 30 1 3.9096 2.3514 0.1314 31 1 5.1997 0.4718 -0.8902 32 1 3.8887 1.0358 -1.9558 33 1 3.7812 -1.3834 -0.0954 34 1 3.9100 -1.4304 -1.8704 35 1 -0.2396 -4.1302 -1.8622 36 1 1.3424 -4.8093 -1.4105 37 1 1.9457 -4.9972 -3.8086 38 1 0.3635 -4.3179 -4.2597 39 1 -0.7718 -6.2131 -3.1344 40 1 0.8101 -6.8930 -2.6831 41 1 -1.1904 -11.4557 -6.0382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805459112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:46 Heat of formation + Delta-G solvation = -120.040990 kcal Electronic energy + Delta-G solvation = -20306.703792 eV Core-core repulsion = 17118.409371 eV Total energy + Delta-G solvation = -3188.294420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93665 -39.70291 -37.73495 -35.00281 -34.69441 -34.48183 -32.39499 -28.46940 -27.97333 -27.52460 -25.24717 -23.95829 -22.81477 -22.03587 -20.69925 -19.65392 -18.80264 -17.86830 -17.74081 -17.11580 -16.53882 -16.28807 -15.99337 -15.94189 -15.38672 -14.99234 -14.87413 -14.65080 -14.14575 -14.06584 -13.98872 -13.79233 -13.37109 -13.18765 -13.03673 -12.83256 -12.63164 -12.48706 -12.34786 -12.23868 -12.00465 -11.78676 -11.64174 -11.53861 -11.37425 -11.17573 -11.10225 -10.62213 -9.42970 -9.02063 -8.52986 -6.25463 1.03287 1.04790 1.32497 1.37739 1.48939 1.78692 2.24045 2.64331 2.80752 2.84992 3.46786 3.71022 3.80005 3.91251 3.92503 3.97676 4.07537 4.11580 4.22894 4.25678 4.39781 4.45050 4.47299 4.56407 4.62520 4.73582 4.78039 4.93247 4.96008 4.96285 5.03014 5.07147 5.17183 5.23259 5.38202 5.44321 5.68431 5.81255 6.00916 6.09342 6.66550 6.90421 8.60116 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.041476 B = 0.002543 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.926418 B =11008.174046 C =11368.904834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.542 5.542 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.108 4.108 7 C 0.099 3.901 8 H 0.090 0.910 9 C 0.461 3.539 10 O -0.519 6.519 11 O -0.355 6.355 12 C 0.079 3.921 13 C -0.087 4.087 14 C -0.074 4.074 15 S -0.205 6.205 16 C -0.526 4.526 17 H 0.051 0.949 18 C 0.036 3.964 19 N -0.922 5.922 20 Si 0.927 3.073 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.226 1.226 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.886 28.653 7.748 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.010 4.010 8 H 0.107 0.893 9 C 0.304 3.696 10 O -0.407 6.407 11 O -0.272 6.272 12 C 0.003 3.997 13 C -0.125 4.125 14 C -0.223 4.223 15 S 0.023 5.977 16 C -0.673 4.673 17 H 0.069 0.931 18 C -0.168 4.168 19 N -0.560 5.560 20 Si 0.748 3.252 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.150 1.150 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.250 28.430 7.427 31.121 hybrid contribution -1.285 -1.185 0.256 1.767 sum 8.966 27.245 7.683 29.693 Atomic orbital electron populations 1.22570 0.86641 1.02730 1.01606 1.61707 1.08511 1.15176 1.41485 1.22271 0.96460 0.86480 1.01870 1.21660 0.93489 1.01513 0.99002 1.21587 1.00966 0.93248 0.99420 1.21625 0.89465 1.00175 1.03349 1.21353 0.97366 0.86855 0.95434 0.89285 1.24127 0.75966 0.88741 0.80790 1.90643 1.43214 1.72782 1.34053 1.86457 1.73636 1.29089 1.37985 1.23016 0.98460 0.79587 0.98621 1.21143 1.03125 0.92366 0.95866 1.22972 1.03374 0.97909 0.98028 1.83790 1.79660 1.16803 1.17414 1.22351 1.44401 1.00565 1.00028 0.93112 1.25816 0.93880 0.93633 1.03517 1.70045 1.42910 1.06607 1.36449 0.85694 0.79346 0.81758 0.78434 1.18499 1.18776 1.14954 0.92345 0.89565 0.94701 0.89191 0.93505 0.91810 0.88992 0.89698 0.90632 0.91700 0.89536 0.91056 0.90994 0.89445 0.89572 0.91100 0.91112 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.10 127.69 1.16 1.38 16 2 N -0.54 -9.79 4.51 -901.58 -4.07 -13.85 16 3 C 0.06 0.64 5.46 86.32 0.47 1.12 16 4 C -0.12 -1.12 6.09 30.65 0.19 -0.93 16 5 C -0.11 -1.09 6.00 30.67 0.18 -0.91 16 6 C -0.11 -1.60 5.35 30.65 0.16 -1.44 16 7 C 0.10 1.82 2.35 44.19 0.10 1.92 16 8 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 9 C 0.46 11.59 6.39 71.23 0.46 12.04 16 10 O -0.52 -16.17 14.27 21.95 0.31 -15.86 16 11 O -0.36 -9.04 10.22 -51.34 -0.52 -9.56 16 12 C 0.08 2.11 5.47 71.98 0.39 2.50 16 13 C -0.09 -2.49 5.60 30.60 0.17 -2.32 16 14 C -0.07 -2.78 5.67 71.98 0.41 -2.37 16 15 S -0.20 -9.68 19.41 -56.49 -1.10 -10.77 16 16 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 17 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 18 C 0.04 2.13 5.50 84.86 0.47 2.59 16 19 N -0.92 -56.85 13.97 21.65 0.30 -56.55 16 20 Si 0.93 43.66 27.74 68.60 1.90 45.56 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.23 -10.17 6.74 99.48 0.67 -9.50 16 24 H 0.06 1.39 5.63 -2.38 -0.01 1.38 16 25 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 26 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 36 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 37 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 41 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -69.42 344.37 2.63 -66.79 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.95 Total: 10.90 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.85 Total: -16.66 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -3.76 Total: -70.40 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.21 Total: -25.42 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.10 Total: -10.77 kcal Total: -69.42 2.63 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805459112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.247 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds