Wall clock time and date at job start Tue Mar 31 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.50701 * 109.47202 * 119.99539 * 2 1 3 5 5 H 1.08000 * 119.99936 * 119.99945 * 4 2 1 6 6 C 1.37875 * 120.00163 * 300.00813 * 4 2 1 7 7 N 1.31509 * 120.00211 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99843 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46905 * 90.00732 * 8 6 4 10 10 H 1.48500 * 109.47529 * 210.00241 * 8 6 4 11 11 H 1.48492 * 109.47436 * 330.00746 * 8 6 4 12 12 O 1.45197 * 109.47570 * 239.99815 * 2 1 3 13 13 C 1.34231 * 117.00019 * 89.99481 * 12 2 1 14 14 O 1.20828 * 119.99920 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99969 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46940 * 300.00081 * 15 13 12 17 17 C 1.52999 * 109.47216 * 60.00490 * 15 13 12 18 18 C 1.53008 * 109.46910 * 180.02562 * 15 13 12 19 19 C 1.50707 * 109.46716 * 175.00092 * 18 15 13 20 20 C 1.38362 * 119.84684 * 89.99746 * 19 18 15 21 21 C 1.37947 * 120.14934 * 179.97438 * 20 19 18 22 22 C 1.39626 * 119.84448 * 0.26455 * 21 20 19 23 23 C 1.43209 * 120.14996 * 179.72123 * 22 21 20 24 24 N 9.87359 * 142.89830 * 211.26401 * 12 1 2 25 25 C 1.39630 * 119.70060 * 359.43964 * 22 21 20 26 26 C 1.37949 * 119.84894 * 0.57772 * 25 22 21 27 27 H 1.08991 * 109.47491 * 300.00225 * 1 2 3 28 28 H 1.09000 * 109.47028 * 60.00348 * 1 2 3 29 29 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00267 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47049 * 299.99641 * 17 15 13 32 32 H 1.08998 * 109.47103 * 59.99677 * 17 15 13 33 33 H 1.09003 * 109.46757 * 179.97438 * 17 15 13 34 34 H 1.09000 * 109.47311 * 55.00216 * 18 15 13 35 35 H 1.08992 * 109.46737 * 294.99684 * 18 15 13 36 36 H 1.07999 * 119.92639 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.07327 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.07856 * 180.26223 * 25 22 21 39 39 H 1.07993 * 119.92639 * 179.68022 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8588 3.5566 8 14 0.6256 1.2798 2.6540 9 1 -0.8023 0.8742 2.6993 10 1 0.9767 1.9955 3.9069 11 1 0.8486 2.1772 1.4922 12 8 2.0141 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9981 1.2518 -2.2504 15 6 2.7183 -0.5773 -3.5494 16 1 3.6873 -1.0409 -3.3638 17 6 1.7225 -1.6437 -4.0098 18 6 2.8636 0.4890 -4.6371 19 6 3.4798 -0.1280 -5.8662 20 6 2.6675 -0.6814 -6.8400 21 6 3.2249 -1.2474 -7.9678 22 6 4.6124 -1.2658 -8.1227 23 6 5.1983 -1.8569 -9.2881 24 7 5.6651 -2.3265 -10.2111 25 6 5.4259 -0.6999 -7.1390 26 6 4.8553 -0.1376 -6.0160 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9038 -0.5273 4.4375 31 1 1.6194 -2.4032 -3.2348 32 1 0.7536 -1.1801 -4.1953 33 1 2.0848 -2.1072 -4.9274 34 1 3.5037 1.2932 -4.2744 35 1 1.8812 0.8905 -4.8856 36 1 1.5946 -0.6703 -6.7169 37 1 2.5896 -1.6794 -8.7270 38 1 6.4997 -0.7070 -7.2546 39 1 5.4835 0.2958 -5.2520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847646975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:32 Heat of formation + Delta-G solvation = -43.971398 kcal Electronic energy + Delta-G solvation = -21471.971383 eV Core-core repulsion = 18151.531636 eV Total energy + Delta-G solvation = -3320.439746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33107 -39.62231 -37.03332 -36.20006 -34.92310 -33.23509 -31.61436 -31.41620 -30.52602 -27.35833 -25.33904 -24.69225 -23.08819 -22.64085 -20.94003 -19.41464 -19.26655 -17.45912 -16.69132 -16.09534 -16.03292 -15.51465 -15.42591 -14.84764 -14.70353 -14.31603 -14.05321 -13.82669 -13.48397 -13.24062 -13.11285 -12.89388 -12.71158 -12.41118 -12.34525 -12.21457 -11.87447 -11.69698 -11.48921 -11.38743 -11.20643 -11.07414 -10.92624 -10.26377 -9.98393 -9.80245 -9.59925 -9.38237 -9.16929 -9.05701 -8.72428 -6.26051 -4.28648 0.39360 0.96947 2.33713 2.58649 2.77065 3.15471 3.28069 3.29373 3.35616 3.54199 3.56773 4.23133 4.43614 4.50042 4.54229 4.74628 4.86360 4.97757 5.04873 5.09385 5.13268 5.36440 5.44079 5.53569 5.65645 5.74699 5.75425 5.86795 5.91829 6.02603 6.11616 6.15500 6.24153 6.27634 6.36867 6.45004 6.56288 6.99165 7.14704 7.32553 7.48388 8.18485 8.55348 8.80938 9.30950 10.86038 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.041330 B = 0.002854 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.308727 B = 9808.626601 C = 9935.607639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.045 0.955 4 C -0.525 4.525 5 H 0.087 0.913 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.262 1.262 12 O -0.338 6.338 13 C 0.456 3.544 14 O -0.523 6.523 15 C -0.079 4.079 16 H 0.108 0.892 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.042 4.042 20 C -0.115 4.115 21 C -0.068 4.068 22 C -0.040 4.040 23 C 0.257 3.743 24 N -0.424 5.424 25 C -0.066 4.066 26 C -0.116 4.116 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 0.947 -20.071 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.137 3.863 3 H 0.063 0.937 4 C -0.563 4.563 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.254 6.254 13 C 0.299 3.701 14 O -0.413 6.413 15 C -0.099 4.099 16 H 0.126 0.874 17 C -0.205 4.205 18 C -0.111 4.111 19 C -0.043 4.043 20 C -0.133 4.133 21 C -0.089 4.089 22 C -0.043 4.043 23 C -0.058 4.058 24 N -0.099 5.099 25 C -0.087 4.087 26 C -0.134 4.134 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.825 0.547 -21.228 21.313 hybrid contribution -0.815 1.044 0.723 1.509 sum 1.010 1.590 -20.504 20.591 Atomic orbital electron populations 1.22516 0.98503 1.01839 0.99797 1.20920 0.90452 0.94417 0.80546 0.93684 1.20782 1.33421 1.14847 0.87262 0.89494 1.24738 0.95663 0.96727 0.95274 1.69831 1.44677 1.39948 0.98014 0.86969 0.80763 0.83642 0.77781 1.20005 1.21684 1.18721 1.86509 1.75492 1.42738 1.20633 1.23399 0.74714 0.85859 0.86124 1.90599 1.48954 1.16967 1.84817 1.20926 1.02018 0.97016 0.89905 0.87384 1.21857 0.98123 0.98120 1.02401 1.20609 1.02776 0.97011 0.90740 1.20164 0.93580 0.95201 0.95350 1.21085 1.00600 0.98478 0.93175 1.21164 0.92620 0.97321 0.97758 1.16001 0.93360 1.04001 0.90967 1.25778 0.93548 0.93429 0.93023 1.81259 1.08116 1.09532 1.11009 1.21175 0.99846 0.95288 0.92380 1.21093 0.94535 1.00025 0.97726 0.92578 0.94456 0.91782 0.92042 0.90664 0.92137 0.91158 0.89265 0.89544 0.84633 0.85006 0.84969 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.03 37.16 0.34 -3.39 16 2 C 0.19 4.63 2.15 -27.88 -0.06 4.57 16 3 H 0.05 1.16 6.21 -51.93 -0.32 0.84 16 4 C -0.53 -14.69 9.48 -34.44 -0.33 -15.01 16 5 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 8 Si 0.88 21.22 24.37 -169.99 -4.14 17.07 16 9 H -0.27 -6.33 6.87 56.52 0.39 -5.94 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.26 -6.22 6.53 56.52 0.37 -5.86 16 12 O -0.34 -7.24 9.77 -39.26 -0.38 -7.62 16 13 C 0.46 8.14 7.23 36.01 0.26 8.40 16 14 O -0.52 -10.58 15.14 -18.75 -0.28 -10.86 16 15 C -0.08 -0.94 2.82 -91.77 -0.26 -1.20 16 16 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.15 -1.50 8.69 37.16 0.32 -1.17 16 18 C -0.07 -0.72 4.18 -27.88 -0.12 -0.83 16 19 C -0.04 -0.32 4.72 -104.53 -0.49 -0.82 16 20 C -0.12 -0.76 7.93 -39.64 -0.31 -1.07 16 21 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 22 C -0.04 -0.30 5.73 -106.93 -0.61 -0.91 16 23 C 0.26 2.40 15.33 -22.47 -0.34 2.05 16 24 N -0.42 -4.97 18.54 41.83 0.78 -4.20 16 25 C -0.07 -0.44 9.76 -39.17 -0.38 -0.83 16 26 C -0.12 -0.81 9.68 -39.64 -0.38 -1.20 16 27 H 0.06 1.26 3.27 -51.93 -0.17 1.09 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.55 6.26 -51.93 -0.33 0.23 16 34 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 35 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.14 0.71 8.03 -52.49 -0.42 0.29 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -32.26 335.19 -6.12 -38.38 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.05 Total: -2.23 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.85 Total: -10.09 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 1.55 Total: -29.69 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.67 Total: -18.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.26 -6.12 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.592 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds