Wall clock time and date at job start Tue Mar 31 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.50701 * 109.47202 * 119.99539 * 2 1 3 5 5 H 1.08000 * 119.99936 * 119.99945 * 4 2 1 6 6 C 1.37875 * 120.00163 * 300.00813 * 4 2 1 7 7 N 1.31509 * 120.00211 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99843 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46905 * 90.00732 * 8 6 4 10 10 H 1.48500 * 109.47529 * 210.00241 * 8 6 4 11 11 H 1.48492 * 109.47436 * 330.00746 * 8 6 4 12 12 O 1.45197 * 109.47570 * 239.99815 * 2 1 3 13 13 C 1.34231 * 117.00019 * 89.99481 * 12 2 1 14 14 O 1.20828 * 119.99920 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99969 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46940 * 300.00081 * 15 13 12 17 17 C 1.52999 * 109.47216 * 60.00490 * 15 13 12 18 18 C 1.53008 * 109.46910 * 180.02562 * 15 13 12 19 19 C 1.50707 * 109.46716 * 175.00092 * 18 15 13 20 20 C 1.38362 * 119.84684 * 89.99746 * 19 18 15 21 21 C 1.37947 * 120.14934 * 179.97438 * 20 19 18 22 22 C 1.39626 * 119.84448 * 0.26455 * 21 20 19 23 23 C 1.43209 * 120.14996 * 179.72123 * 22 21 20 24 24 N 9.87359 * 142.89830 * 211.26401 * 12 1 2 25 25 C 1.39630 * 119.70060 * 359.43964 * 22 21 20 26 26 C 1.37949 * 119.84894 * 0.57772 * 25 22 21 27 27 H 1.08991 * 109.47491 * 300.00225 * 1 2 3 28 28 H 1.09000 * 109.47028 * 60.00348 * 1 2 3 29 29 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00267 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47049 * 299.99641 * 17 15 13 32 32 H 1.08998 * 109.47103 * 59.99677 * 17 15 13 33 33 H 1.09003 * 109.46757 * 179.97438 * 17 15 13 34 34 H 1.09000 * 109.47311 * 55.00216 * 18 15 13 35 35 H 1.08992 * 109.46737 * 294.99684 * 18 15 13 36 36 H 1.07999 * 119.92639 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.07327 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.07856 * 180.26223 * 25 22 21 39 39 H 1.07993 * 119.92639 * 179.68022 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8588 3.5566 8 14 0.6256 1.2798 2.6540 9 1 -0.8023 0.8742 2.6993 10 1 0.9767 1.9955 3.9069 11 1 0.8486 2.1772 1.4922 12 8 2.0141 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9981 1.2518 -2.2504 15 6 2.7183 -0.5773 -3.5494 16 1 3.6873 -1.0409 -3.3638 17 6 1.7225 -1.6437 -4.0098 18 6 2.8636 0.4890 -4.6371 19 6 3.4798 -0.1280 -5.8662 20 6 2.6675 -0.6814 -6.8400 21 6 3.2249 -1.2474 -7.9678 22 6 4.6124 -1.2658 -8.1227 23 6 5.1983 -1.8569 -9.2881 24 7 5.6651 -2.3265 -10.2111 25 6 5.4259 -0.6999 -7.1390 26 6 4.8553 -0.1376 -6.0160 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9038 -0.5273 4.4375 31 1 1.6194 -2.4032 -3.2348 32 1 0.7536 -1.1801 -4.1953 33 1 2.0848 -2.1072 -4.9274 34 1 3.5037 1.2932 -4.2744 35 1 1.8812 0.8905 -4.8856 36 1 1.5946 -0.6703 -6.7169 37 1 2.5896 -1.6794 -8.7270 38 1 6.4997 -0.7070 -7.2546 39 1 5.4835 0.2958 -5.2520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847646975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:32 Heat of formation + Delta-G solvation = -61.735314 kcal Electronic energy + Delta-G solvation = -21472.741684 eV Core-core repulsion = 18151.531636 eV Total energy + Delta-G solvation = -3321.210048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55712 -40.48143 -38.03995 -37.53157 -35.91770 -35.23894 -32.77556 -32.08340 -31.88547 -28.09355 -27.33044 -25.81937 -23.78495 -23.58988 -22.34172 -20.78326 -19.85213 -19.09373 -18.49505 -17.60871 -17.08999 -16.58252 -16.39923 -16.06861 -15.45040 -15.18974 -15.14242 -14.91502 -14.54637 -14.35607 -14.23534 -14.12844 -13.90971 -13.85301 -13.45410 -13.39911 -13.06515 -12.94736 -12.83961 -12.26647 -12.20346 -12.18082 -12.03833 -11.79492 -11.69007 -11.61058 -11.22287 -11.11039 -10.81536 -9.88289 -9.67929 -8.43015 -6.51667 -0.19846 0.47833 1.24893 1.32648 1.34476 1.41982 1.62364 1.85643 2.07395 2.20978 2.89478 2.89948 2.93584 3.63310 3.85513 3.89280 4.04396 4.08677 4.14019 4.27408 4.37266 4.44840 4.48847 4.51689 4.58072 4.77710 4.82747 4.85074 4.92865 4.99580 5.15593 5.21746 5.25107 5.31777 5.35358 5.38518 5.40961 5.68652 5.72359 5.92499 6.18245 6.45303 6.52876 6.94128 7.14103 8.72918 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.041330 B = 0.002854 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.308727 B = 9808.626601 C = 9935.607639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.192 3.808 3 H 0.030 0.970 4 C -0.538 4.538 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.931 5.931 8 Si 0.941 3.059 9 H -0.252 1.252 10 H -0.285 1.285 11 H -0.256 1.256 12 O -0.352 6.352 13 C 0.450 3.550 14 O -0.547 6.547 15 C -0.071 4.071 16 H 0.120 0.880 17 C -0.144 4.144 18 C -0.066 4.066 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.049 4.049 23 C 0.281 3.719 24 N -0.472 5.472 25 C -0.064 4.064 26 C -0.120 4.120 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.275 0.725 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 1.750 -21.661 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.138 3.862 3 H 0.048 0.952 4 C -0.576 4.576 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.569 5.569 8 Si 0.766 3.234 9 H -0.177 1.177 10 H -0.212 1.212 11 H -0.181 1.181 12 O -0.268 6.268 13 C 0.295 3.705 14 O -0.438 6.438 15 C -0.090 4.090 16 H 0.138 0.862 17 C -0.201 4.201 18 C -0.103 4.103 19 C -0.047 4.047 20 C -0.131 4.131 21 C -0.082 4.082 22 C -0.052 4.052 23 C -0.033 4.033 24 N -0.148 5.148 25 C -0.084 4.084 26 C -0.138 4.138 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.550 1.340 -22.843 22.889 hybrid contribution -0.323 0.758 1.185 1.443 sum 0.227 2.097 -21.658 21.761 Atomic orbital electron populations 1.22397 0.96303 1.02604 1.00712 1.20587 0.92037 0.92970 0.80618 0.95222 1.20974 1.33181 1.13936 0.89504 0.93514 1.25580 0.96960 0.99869 0.94713 1.69958 1.46255 1.41938 0.98771 0.85973 0.79859 0.79618 0.77936 1.17678 1.21197 1.18050 1.86509 1.76086 1.43274 1.20961 1.24618 0.73656 0.85716 0.86481 1.90579 1.49995 1.18124 1.85119 1.21105 1.02674 0.97929 0.87299 0.86212 1.21878 0.98060 0.97112 1.03065 1.20508 1.02989 0.96101 0.90725 1.20026 0.93903 0.95851 0.94886 1.21252 1.01422 0.97764 0.92647 1.21355 0.92259 0.96590 0.97997 1.16113 0.94015 1.04585 0.90488 1.26019 0.92393 0.92273 0.92651 1.81283 1.09628 1.11343 1.12575 1.21309 1.00589 0.94624 0.91895 1.21213 0.94526 0.99982 0.98034 0.92836 0.92211 0.91167 0.91596 0.92204 0.91493 0.88274 0.90179 0.89325 0.82866 0.83205 0.83698 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.90 9.03 71.98 0.65 -6.25 16 2 C 0.19 9.36 2.15 29.85 0.06 9.42 16 3 H 0.03 1.54 6.21 -2.39 -0.01 1.52 16 4 C -0.54 -30.89 9.48 25.60 0.24 -30.64 16 5 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 6 C 0.03 1.62 5.45 84.66 0.46 2.08 16 7 N -0.93 -56.22 13.96 21.45 0.30 -55.92 16 8 Si 0.94 43.28 24.37 68.60 1.67 44.95 16 9 H -0.25 -10.66 6.87 99.48 0.68 -9.98 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.26 -11.45 6.53 99.48 0.65 -10.80 16 12 O -0.35 -15.10 9.77 -51.42 -0.50 -15.60 16 13 C 0.45 15.70 7.23 71.24 0.51 16.21 16 14 O -0.55 -21.66 15.14 21.96 0.33 -21.33 16 15 C -0.07 -1.56 2.82 -11.54 -0.03 -1.59 16 16 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.14 -2.55 8.69 71.98 0.63 -1.92 16 18 C -0.07 -1.13 4.18 29.85 0.12 -1.01 16 19 C -0.05 -0.57 4.72 -19.80 -0.09 -0.67 16 20 C -0.11 -1.09 7.93 22.23 0.18 -0.91 16 21 C -0.06 -0.59 9.76 22.54 0.22 -0.37 16 22 C -0.05 -0.60 5.73 -21.36 -0.12 -0.72 16 23 C 0.28 4.81 15.33 88.34 1.35 6.17 16 24 N -0.47 -10.75 18.54 19.00 0.35 -10.40 16 25 C -0.06 -0.70 9.76 22.54 0.22 -0.48 16 26 C -0.12 -1.38 9.68 22.23 0.22 -1.17 16 27 H 0.05 2.27 3.27 -2.39 -0.01 2.27 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.20 6.26 -2.39 -0.01 1.18 16 34 H 0.08 1.53 7.90 -2.39 -0.02 1.51 16 35 H 0.09 1.49 8.08 -2.39 -0.02 1.48 16 36 H 0.15 0.96 8.03 -2.91 -0.02 0.93 16 37 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -71.29 335.19 7.75 -63.53 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.98 Total: 6.63 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.62 Total: -11.85 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 0.65 Total: -66.32 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.17 Total: -36.94 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.67 Total: 44.95 kcal Total: -71.29 7.75 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.797 kcal (2) G-P(sol) polarization free energy of solvation -71.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds