Wall clock time and date at job start Tue Mar 31 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47178 * 2 1 4 4 C 1.50701 * 109.46996 * 240.00253 * 2 1 3 5 5 H 1.08000 * 120.00507 * 240.00273 * 4 2 1 6 6 C 1.37876 * 119.99937 * 60.00272 * 4 2 1 7 7 N 1.31518 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47030 * 89.99792 * 8 6 4 10 10 H 1.48508 * 109.47068 * 210.00039 * 8 6 4 11 11 H 1.48497 * 109.47043 * 329.99899 * 8 6 4 12 12 N 1.46497 * 109.47149 * 120.00458 * 2 1 3 13 13 C 1.46505 * 119.99870 * 59.99869 * 12 2 1 14 14 C 1.34779 * 120.00069 * 240.27379 * 12 2 1 15 15 O 1.21666 * 119.99543 * 359.72250 * 14 12 2 16 16 C 1.46661 * 119.99901 * 179.72351 * 14 12 2 17 17 C 1.34727 * 119.99700 * 173.23446 * 16 14 12 18 18 C 1.47253 * 120.00168 * 349.02622 * 17 16 14 19 19 C 1.39923 * 119.99924 * 316.05629 * 18 17 16 20 20 C 1.37097 * 120.00323 * 179.76091 * 19 18 17 21 21 C 1.39953 * 119.99556 * 0.49037 * 20 19 18 22 22 C 1.47183 * 120.00184 * 179.78903 * 21 20 19 23 23 O 1.21253 * 120.00345 * 179.97438 * 22 21 20 24 24 C 1.39943 * 119.99322 * 359.76265 * 21 20 19 25 25 C 1.37102 * 119.99987 * 0.02562 * 24 21 20 26 26 H 1.09010 * 109.46968 * 59.99364 * 1 2 3 27 27 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47025 * 299.99902 * 1 2 3 29 29 H 0.97010 * 119.99742 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47088 * 90.00265 * 13 12 2 31 31 H 1.09001 * 109.47184 * 210.00014 * 13 12 2 32 32 H 1.09003 * 109.47196 * 329.99768 * 13 12 2 33 33 H 1.08002 * 120.00062 * 353.23544 * 16 14 12 34 34 H 1.08000 * 119.99700 * 169.03316 * 17 16 14 35 35 H 1.08000 * 119.99676 * 0.02562 * 19 18 17 36 36 H 1.08003 * 120.00171 * 180.25351 * 20 19 18 37 37 H 1.08000 * 120.00298 * 359.97210 * 22 21 20 38 38 H 1.08000 * 119.99945 * 179.97438 * 24 21 20 39 39 H 1.08000 * 119.99791 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8299 -2.6033 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4865 -0.1410 -5.1124 11 1 3.6292 -1.7582 -3.7124 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7886 -0.0342 2.0861 15 8 3.0826 1.1306 1.8936 16 6 3.2725 -0.7239 3.2866 17 6 4.1512 -0.1140 4.1057 18 6 4.8100 1.1328 3.6817 19 6 5.3176 1.2492 2.3830 20 6 5.9266 2.4118 1.9866 21 6 6.0497 3.4784 2.8843 22 6 6.7076 4.7249 2.4603 23 8 6.8138 5.6493 3.2378 24 6 5.5466 3.3600 4.1848 25 6 4.9338 2.1988 4.5796 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7087 1.1616 -3.4844 30 1 2.4157 -2.7378 0.9715 31 1 1.6237 -2.2855 2.5000 32 1 0.6903 -2.3003 0.9845 33 1 2.9243 -1.7207 3.5139 34 1 4.3726 -0.5397 5.0733 35 1 5.2259 0.4247 1.6915 36 1 6.3148 2.5031 0.9829 37 1 7.0958 4.8163 1.4567 38 1 5.6419 4.1829 4.8777 39 1 4.5452 2.1076 5.5831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865164508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:08 Heat of formation + Delta-G solvation = -9.234208 kcal Electronic energy + Delta-G solvation = -22265.104591 eV Core-core repulsion = 18946.171162 eV Total energy + Delta-G solvation = -3318.933429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91040 -39.10856 -37.84544 -35.48496 -33.63102 -32.87166 -30.95543 -30.22028 -29.10080 -26.20587 -25.31804 -25.09103 -22.80376 -22.41357 -20.94341 -19.79570 -18.09237 -17.14734 -16.82867 -16.35633 -15.83669 -15.50799 -14.81047 -14.52010 -14.33041 -14.15974 -14.00470 -13.60571 -13.45489 -13.27544 -12.73100 -12.62410 -12.43693 -12.13936 -11.69495 -11.57849 -11.26199 -11.10587 -10.93030 -10.84285 -10.74756 -10.30474 -10.21085 -9.75609 -9.71467 -9.22052 -9.14594 -8.69521 -8.47978 -7.90866 -7.57706 -6.11144 -4.19605 0.52356 1.61918 1.73500 2.69816 3.22847 3.30394 3.32498 3.89030 3.95130 4.08568 4.35827 4.36646 4.78025 4.94370 5.10548 5.15202 5.20015 5.33138 5.41047 5.55640 5.70568 5.73758 5.97290 6.01391 6.15039 6.19058 6.27813 6.30223 6.52477 6.59615 6.71991 6.75793 6.80579 7.02091 7.11203 7.39813 7.48126 7.48868 7.67418 7.97385 8.15120 8.48540 8.79223 9.01380 9.47263 10.93945 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.004702 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.783711 B = 5953.305901 C = 7013.310922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.584 5.584 13 C 0.084 3.916 14 C 0.521 3.479 15 O -0.539 6.539 16 C -0.186 4.186 17 C -0.060 4.060 18 C -0.021 4.021 19 C -0.047 4.047 20 C -0.076 4.076 21 C -0.193 4.193 22 C 0.386 3.614 23 O -0.473 6.473 24 C -0.073 4.073 25 C -0.124 4.124 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 -3.382 11.519 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.060 4.060 14 C 0.310 3.690 15 O -0.419 6.419 16 C -0.207 4.207 17 C -0.079 4.079 18 C -0.021 4.021 19 C -0.065 4.065 20 C -0.095 4.095 21 C -0.194 4.194 22 C 0.246 3.754 23 O -0.348 6.348 24 C -0.091 4.091 25 C -0.142 4.142 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.948 -2.169 11.626 13.717 hybrid contribution -0.082 -0.895 -1.035 1.371 sum 6.866 -3.064 10.591 12.989 Atomic orbital electron populations 1.22103 0.98313 0.99339 1.00882 1.18950 0.90825 0.94573 0.79905 0.91761 1.21294 1.31904 1.12950 0.90237 0.92332 1.24891 0.94952 0.94944 0.98950 1.69885 1.36298 1.22561 1.23779 0.86506 0.79178 0.79319 0.82448 1.20624 1.21091 1.19950 1.48251 1.48572 1.11443 1.23111 1.21620 1.01663 0.83275 0.99420 1.18404 0.80174 0.87031 0.83406 1.90824 1.57792 1.16646 1.76684 1.23472 1.00317 1.00247 0.96664 1.22305 0.94455 0.93315 0.97856 1.19135 0.95528 0.93659 0.93818 1.20967 0.93528 0.98176 0.93817 1.21051 0.97406 0.92394 0.98637 1.20837 1.05481 0.97184 0.95873 1.24101 0.74439 0.84601 0.92278 1.90477 1.47554 1.40015 1.56720 1.21001 0.95679 0.97279 0.95186 1.20965 1.00639 0.93254 0.99336 0.88788 0.95127 0.96999 0.92665 0.93186 0.92753 0.90888 0.84959 0.84848 0.85943 0.85381 0.88195 0.85620 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.16 0.33 -3.14 16 2 C 0.26 6.36 2.64 -69.08 -0.18 6.18 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.74 8.37 -34.44 -0.29 -14.02 16 5 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.58 -11.87 2.75 -176.82 -0.49 -12.35 16 13 C 0.08 1.33 9.44 59.85 0.57 1.90 16 14 C 0.52 10.10 6.66 -12.86 -0.09 10.02 16 15 O -0.54 -12.13 11.49 5.22 0.06 -12.07 16 16 C -0.19 -2.63 9.14 -37.43 -0.34 -2.97 16 17 C -0.06 -0.75 9.80 -37.16 -0.36 -1.11 16 18 C -0.02 -0.31 4.54 -104.97 -0.48 -0.79 16 19 C -0.05 -0.75 6.55 -39.37 -0.26 -1.01 16 20 C -0.08 -1.13 9.75 -39.35 -0.38 -1.51 16 21 C -0.19 -2.76 5.87 -104.98 -0.62 -3.38 16 22 C 0.39 5.00 11.45 34.36 0.39 5.39 16 23 O -0.47 -7.53 17.15 5.58 0.10 -7.44 16 24 C -0.07 -1.04 9.56 -39.36 -0.38 -1.42 16 25 C -0.12 -1.69 9.75 -39.36 -0.38 -2.08 16 26 H 0.09 2.44 6.07 -51.92 -0.32 2.12 16 27 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.66 6.00 -51.93 -0.31 0.35 16 32 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 33 H 0.13 1.45 6.15 -52.49 -0.32 1.12 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 2.10 7.02 -52.49 -0.37 1.73 16 36 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.67 7.63 -52.49 -0.40 1.27 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -31.88 328.67 -7.16 -39.04 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.83 Total: 2.66 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.56 Total: -6.31 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.14 Total: -36.35 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.88 -7.16 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865164508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.810 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds