Wall clock time and date at job start Tue Mar 31 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47178 * 2 1 4 4 C 1.50701 * 109.46996 * 240.00253 * 2 1 3 5 5 H 1.08000 * 120.00507 * 240.00273 * 4 2 1 6 6 C 1.37876 * 119.99937 * 60.00272 * 4 2 1 7 7 N 1.31518 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47030 * 89.99792 * 8 6 4 10 10 H 1.48508 * 109.47068 * 210.00039 * 8 6 4 11 11 H 1.48497 * 109.47043 * 329.99899 * 8 6 4 12 12 N 1.46497 * 109.47149 * 120.00458 * 2 1 3 13 13 C 1.46505 * 119.99870 * 59.99869 * 12 2 1 14 14 C 1.34779 * 120.00069 * 240.27379 * 12 2 1 15 15 O 1.21666 * 119.99543 * 359.72250 * 14 12 2 16 16 C 1.46661 * 119.99901 * 179.72351 * 14 12 2 17 17 C 1.34727 * 119.99700 * 173.23446 * 16 14 12 18 18 C 1.47253 * 120.00168 * 349.02622 * 17 16 14 19 19 C 1.39923 * 119.99924 * 316.05629 * 18 17 16 20 20 C 1.37097 * 120.00323 * 179.76091 * 19 18 17 21 21 C 1.39953 * 119.99556 * 0.49037 * 20 19 18 22 22 C 1.47183 * 120.00184 * 179.78903 * 21 20 19 23 23 O 1.21253 * 120.00345 * 179.97438 * 22 21 20 24 24 C 1.39943 * 119.99322 * 359.76265 * 21 20 19 25 25 C 1.37102 * 119.99987 * 0.02562 * 24 21 20 26 26 H 1.09010 * 109.46968 * 59.99364 * 1 2 3 27 27 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47025 * 299.99902 * 1 2 3 29 29 H 0.97010 * 119.99742 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47088 * 90.00265 * 13 12 2 31 31 H 1.09001 * 109.47184 * 210.00014 * 13 12 2 32 32 H 1.09003 * 109.47196 * 329.99768 * 13 12 2 33 33 H 1.08002 * 120.00062 * 353.23544 * 16 14 12 34 34 H 1.08000 * 119.99700 * 169.03316 * 17 16 14 35 35 H 1.08000 * 119.99676 * 0.02562 * 19 18 17 36 36 H 1.08003 * 120.00171 * 180.25351 * 20 19 18 37 37 H 1.08000 * 120.00298 * 359.97210 * 22 21 20 38 38 H 1.08000 * 119.99945 * 179.97438 * 24 21 20 39 39 H 1.08000 * 119.99791 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8299 -2.6033 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4865 -0.1410 -5.1124 11 1 3.6292 -1.7582 -3.7124 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7886 -0.0342 2.0861 15 8 3.0826 1.1306 1.8936 16 6 3.2725 -0.7239 3.2866 17 6 4.1512 -0.1140 4.1057 18 6 4.8100 1.1328 3.6817 19 6 5.3176 1.2492 2.3830 20 6 5.9266 2.4118 1.9866 21 6 6.0497 3.4784 2.8843 22 6 6.7076 4.7249 2.4603 23 8 6.8138 5.6493 3.2378 24 6 5.5466 3.3600 4.1848 25 6 4.9338 2.1988 4.5796 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7087 1.1616 -3.4844 30 1 2.4157 -2.7378 0.9715 31 1 1.6237 -2.2855 2.5000 32 1 0.6903 -2.3003 0.9845 33 1 2.9243 -1.7207 3.5139 34 1 4.3726 -0.5397 5.0733 35 1 5.2259 0.4247 1.6915 36 1 6.3148 2.5031 0.9829 37 1 7.0958 4.8163 1.4567 38 1 5.6419 4.1829 4.8777 39 1 4.5452 2.1076 5.5831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865164508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:08 Heat of formation + Delta-G solvation = -27.898041 kcal Electronic energy + Delta-G solvation = -22265.913916 eV Core-core repulsion = 18946.171162 eV Total energy + Delta-G solvation = -3319.742753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16449 -40.39385 -39.04749 -37.11541 -34.89638 -34.63692 -32.08764 -31.72640 -30.55386 -27.58169 -27.27883 -26.32477 -24.17565 -23.53358 -22.25456 -21.23254 -19.41251 -18.61554 -18.16871 -17.95008 -17.20394 -16.88585 -16.38669 -15.97344 -15.57889 -15.32382 -15.28760 -14.97528 -14.63691 -14.42047 -14.36683 -14.02496 -13.80741 -13.48185 -13.33080 -12.98926 -12.87766 -12.68767 -12.60127 -12.40291 -12.18182 -12.11504 -12.03812 -11.15717 -10.88272 -10.80519 -10.61270 -10.45229 -9.85739 -9.18418 -9.09669 -8.13243 -6.29891 -0.58298 0.50408 0.62649 1.41587 1.42880 1.52595 1.61415 2.34663 2.53049 2.58993 2.96196 3.14633 3.37786 3.75368 3.86548 3.94006 4.04426 4.32946 4.41639 4.48478 4.57799 4.62766 4.73541 4.82270 4.88121 4.92801 5.04704 5.06458 5.10195 5.14748 5.25027 5.40653 5.47559 5.49140 5.61444 5.70204 5.74753 6.00694 6.07102 6.18096 6.43524 6.78858 6.92034 7.35963 7.56330 8.90565 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.004702 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.783711 B = 5953.305901 C = 7013.310922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.264 3.736 3 H 0.011 0.989 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.597 5.597 13 C 0.081 3.919 14 C 0.510 3.490 15 O -0.582 6.582 16 C -0.198 4.198 17 C -0.035 4.035 18 C -0.038 4.038 19 C -0.068 4.068 20 C -0.087 4.087 21 C -0.205 4.205 22 C 0.393 3.607 23 O -0.504 6.504 24 C -0.086 4.086 25 C -0.122 4.122 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.263 0.737 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.172 0.828 34 H 0.185 0.815 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -5.320 13.042 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.326 5.326 13 C -0.062 4.062 14 C 0.301 3.699 15 O -0.465 6.465 16 C -0.219 4.219 17 C -0.054 4.054 18 C -0.039 4.039 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.206 4.206 22 C 0.255 3.745 23 O -0.381 6.381 24 C -0.104 4.104 25 C -0.140 4.140 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.202 0.798 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.530 -4.153 13.170 15.729 hybrid contribution -0.215 -0.229 -1.465 1.498 sum 7.315 -4.381 11.705 14.482 Atomic orbital electron populations 1.21895 0.97657 0.99972 0.99749 1.18463 0.91239 0.92302 0.81822 0.97147 1.21552 1.31709 1.12867 0.91101 0.92239 1.25710 0.95123 0.95585 1.01958 1.70033 1.37442 1.23960 1.24312 0.85492 0.78879 0.78235 0.78618 1.19489 1.21276 1.19422 1.48220 1.49149 1.13150 1.22082 1.21857 1.01279 0.80574 1.02444 1.19341 0.79251 0.86853 0.84467 1.90804 1.59072 1.18790 1.77879 1.23415 1.02112 1.01867 0.94464 1.22799 0.92164 0.91448 0.99018 1.19497 0.95619 0.95307 0.93449 1.20977 0.95001 0.98157 0.94513 1.21248 0.97513 0.92346 0.99453 1.21095 1.05730 0.97680 0.96078 1.24580 0.73219 0.83335 0.93359 1.90469 1.48907 1.40804 1.57898 1.21286 0.95725 0.97947 0.95425 1.21303 0.99778 0.92459 1.00483 0.91576 0.93446 0.96393 0.92753 0.92697 0.88269 0.91560 0.81051 0.79773 0.87991 0.84189 0.84137 0.84912 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.95 71.98 0.64 -5.80 16 2 C 0.26 13.45 2.64 44.25 0.12 13.57 16 3 H 0.01 0.65 6.90 -2.39 -0.02 0.63 16 4 C -0.53 -28.40 8.37 25.60 0.21 -28.18 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.29 16 8 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.60 -24.12 2.75 -831.55 -2.29 -26.41 16 13 C 0.08 2.38 9.44 127.77 1.21 3.58 16 14 C 0.51 19.62 6.66 86.44 0.58 20.20 16 15 O -0.58 -27.05 11.49 -4.24 -0.05 -27.10 16 16 C -0.20 -5.01 9.14 23.66 0.22 -4.79 16 17 C -0.04 -0.76 9.80 23.84 0.23 -0.53 16 18 C -0.04 -1.09 4.54 -20.09 -0.09 -1.18 16 19 C -0.07 -2.23 6.55 22.41 0.15 -2.08 16 20 C -0.09 -2.63 9.75 22.42 0.22 -2.41 16 21 C -0.20 -5.84 5.87 -20.10 -0.12 -5.96 16 22 C 0.39 9.92 11.45 70.17 0.80 10.73 16 23 O -0.50 -15.86 17.15 -2.95 -0.05 -15.91 16 24 C -0.09 -2.37 9.56 22.42 0.21 -2.16 16 25 C -0.12 -3.12 9.75 22.41 0.22 -2.90 16 26 H 0.07 3.55 6.07 -2.38 -0.01 3.53 16 27 H 0.05 2.05 6.66 -2.39 -0.02 2.04 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 2.00 6.00 -2.39 -0.01 1.99 16 32 H 0.07 2.03 6.43 -2.39 -0.02 2.01 16 33 H 0.17 2.89 6.15 -2.91 -0.02 2.87 16 34 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.10 3.66 7.02 -2.91 -0.02 3.64 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.13 3.42 7.63 -2.91 -0.02 3.40 16 39 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -73.39 328.67 5.99 -67.40 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.06 Total: 16.55 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.05 Total: -6.62 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -2.05 Total: -78.70 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.10 Total: -43.01 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -73.39 5.99 -67.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865164508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.501 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds