Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.82194 * 2 1 4 4 C 1.51503 * 109.82966 * 239.05609 * 2 1 3 5 5 O 1.20762 * 121.02401 * 106.63949 * 4 2 1 6 6 C 1.51326 * 117.95854 * 286.63203 * 4 2 1 7 7 C 1.53240 * 108.64563 * 307.39978 * 6 4 2 8 8 C 1.52619 * 109.50131 * 56.05213 * 7 6 4 9 9 N 1.46877 * 109.53269 * 301.85061 * 8 7 6 10 10 C 1.34772 * 120.71491 * 237.05537 * 9 8 7 11 11 O 1.21554 * 120.00290 * 354.97337 * 10 9 8 12 12 C 1.47886 * 120.00099 * 174.97292 * 10 9 8 13 13 C 1.39926 * 120.02423 * 45.49482 * 12 10 9 14 14 C 1.38325 * 120.36015 * 180.30670 * 13 12 10 15 15 C 1.37754 * 120.41013 * 359.71831 * 14 13 12 16 16 C 1.40748 * 120.03997 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17919 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99259 * 334.99165 * 17 16 15 19 19 C 1.39928 * 120.00128 * 154.99759 * 17 16 15 20 20 N 1.30825 * 120.00128 * 342.92558 * 19 17 16 21 21 Si 1.86804 * 119.99926 * 162.93249 * 19 17 16 22 22 H 1.48496 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47344 * 119.99954 * 21 19 17 24 24 H 1.48508 * 109.46805 * 239.99722 * 21 19 17 25 25 C 1.38985 * 120.03079 * 225.22109 * 12 10 9 26 26 H 1.08998 * 109.47531 * 299.12596 * 1 2 3 27 27 H 1.09002 * 109.47173 * 59.12393 * 1 2 3 28 28 H 1.08996 * 109.47568 * 179.12009 * 1 2 3 29 29 H 1.08999 * 109.61298 * 67.14369 * 6 4 2 30 30 H 1.08997 * 109.60940 * 187.65531 * 6 4 2 31 31 H 1.09002 * 109.47689 * 176.16742 * 7 6 4 32 32 H 1.08997 * 109.47434 * 296.18424 * 7 6 4 33 33 H 1.08999 * 109.39820 * 181.81814 * 8 7 6 34 34 H 1.08994 * 109.34622 * 61.85425 * 8 7 6 35 35 H 1.08001 * 119.82009 * 0.04943 * 13 12 10 36 36 H 1.07997 * 119.79520 * 179.70551 * 14 13 12 37 37 H 1.08001 * 119.98320 * 179.97438 * 15 14 13 38 38 H 0.97001 * 119.99817 * 179.97438 * 20 19 17 39 39 H 1.08003 * 120.19978 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0439 -0.7328 -1.2223 5 8 2.5338 -0.1318 -2.1481 6 6 1.9246 -2.2412 -1.2475 7 6 2.5501 -2.8035 0.0334 8 6 1.8785 -2.1704 1.2489 9 7 2.0293 -0.7107 1.1884 10 6 2.6169 -0.0370 2.1970 11 8 2.9464 -0.6239 3.2092 12 6 2.8610 1.4162 2.0722 13 6 1.8541 2.2558 1.5832 14 6 2.0770 3.6152 1.4577 15 6 3.2903 4.1591 1.8179 16 6 4.3129 3.3312 2.3179 17 6 5.5599 3.8864 2.6881 18 1 5.8924 4.8124 2.2424 19 6 6.3630 3.2360 3.6315 20 7 5.8462 2.3210 4.4108 21 14 8.1729 3.6743 3.7785 22 1 8.5080 4.7311 2.7905 23 1 8.4522 4.1714 5.1496 24 1 8.9975 2.4684 3.5116 25 6 4.0886 1.9500 2.4460 26 1 -0.3634 0.5002 0.8977 27 1 -0.3633 0.5274 -0.8820 28 1 -0.3634 -1.0275 -0.0158 29 1 0.8732 -2.5243 -1.2958 30 1 2.4525 -2.6354 -2.1159 31 1 2.4112 -3.8843 0.0616 32 1 3.6155 -2.5735 0.0489 33 1 2.3464 -2.5473 2.1583 34 1 0.8192 -2.4271 1.2506 35 1 0.8991 1.8396 1.2983 36 1 1.2950 4.2541 1.0747 37 1 3.4570 5.2213 1.7167 38 1 6.4030 1.8699 5.0646 39 1 4.8671 1.3064 2.8285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885036682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = -50.425003 kcal Electronic energy + Delta-G solvation = -23013.533409 eV Core-core repulsion = 19692.813813 eV Total energy + Delta-G solvation = -3320.719596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55767 -38.83080 -37.19956 -36.17816 -33.96760 -33.12915 -30.99187 -30.13702 -29.50516 -27.23665 -25.44605 -24.30069 -23.04418 -21.69016 -21.02912 -19.81537 -18.30185 -17.62332 -16.46315 -16.23157 -15.52931 -15.22787 -15.20649 -14.87907 -14.60823 -14.28802 -13.99571 -13.56368 -13.21419 -12.89462 -12.71860 -12.62772 -12.46898 -12.23973 -12.11452 -11.72995 -11.55767 -11.21996 -11.15900 -11.07226 -10.96213 -10.73548 -10.47037 -10.16131 -9.76796 -9.71275 -9.27390 -8.96061 -8.40989 -7.63272 -7.52401 -6.81473 -4.44272 1.84628 2.29164 2.76701 3.06247 3.10231 3.12608 3.23164 3.54184 3.89810 3.96140 4.52633 4.61962 4.71972 4.76143 5.09801 5.11869 5.28283 5.31567 5.43634 5.52771 5.56012 5.62390 5.69396 5.85536 5.94720 6.00368 6.09909 6.14918 6.32640 6.64381 6.74980 6.95237 7.00987 7.17764 7.34723 7.36316 7.60093 7.72565 7.80057 7.93444 8.12901 8.46947 8.71066 8.78387 8.80976 10.12576 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005131 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.835828 B = 5455.624969 C = 5844.127430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.077 3.923 3 H 0.145 0.855 4 C 0.357 3.643 5 O -0.444 6.444 6 C -0.170 4.170 7 C -0.128 4.128 8 C 0.105 3.895 9 N -0.609 5.609 10 C 0.574 3.426 11 O -0.534 6.534 12 C -0.122 4.122 13 C -0.231 4.231 14 C -0.093 4.093 15 C -0.212 4.212 16 C 0.104 3.896 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.782 5.782 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.102 4.102 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 -8.350 -7.584 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 H 0.162 0.838 4 C 0.230 3.770 5 O -0.315 6.315 6 C -0.208 4.208 7 C -0.167 4.167 8 C -0.018 4.018 9 N -0.346 5.346 10 C 0.365 3.635 11 O -0.410 6.410 12 C -0.125 4.125 13 C -0.251 4.251 14 C -0.111 4.111 15 C -0.232 4.232 16 C 0.101 3.899 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.406 5.406 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.196 1.196 25 C -0.123 4.123 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.409 -8.502 -7.310 13.439 hybrid contribution 0.665 0.056 0.204 0.698 sum -6.744 -8.446 -7.106 12.934 Atomic orbital electron populations 1.22081 0.93027 1.02738 1.03638 1.22550 0.96033 1.00430 0.83758 0.83763 1.25243 0.73366 0.91870 0.86504 1.90422 1.32454 1.71615 1.36985 1.22332 1.03592 0.94474 1.00385 1.21824 1.01147 1.00670 0.93015 1.21439 1.00614 0.80304 0.99429 1.48113 1.60951 1.06606 1.18917 1.19005 0.74810 0.88056 0.81595 1.90720 1.51136 1.70285 1.28845 1.19392 0.97377 0.90125 1.05616 1.20511 0.98472 0.94026 1.12106 1.20450 0.96562 0.94117 1.00015 1.21105 0.93844 0.98030 1.10235 1.17571 0.92316 0.90859 0.89137 1.19634 1.01125 1.07944 1.20041 0.89983 1.25980 1.00872 0.93784 0.94036 1.69818 1.37418 1.19363 1.14051 0.86243 0.81842 0.79596 0.79005 1.18293 1.19847 1.19619 1.21447 0.95186 0.95541 1.00078 0.90450 0.90971 0.91897 0.88286 0.89317 0.89557 0.90929 0.88325 0.91370 0.88221 0.88748 0.88548 0.90484 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.77 37.15 0.33 -1.40 16 2 C 0.08 1.13 2.36 -68.31 -0.16 0.97 16 3 H 0.15 2.53 4.54 -51.93 -0.24 2.29 16 4 C 0.36 5.05 6.18 -28.33 -0.18 4.88 16 5 O -0.44 -7.75 17.90 6.00 0.11 -7.64 16 6 C -0.17 -1.72 6.01 -27.45 -0.17 -1.88 16 7 C -0.13 -1.33 6.07 -26.80 -0.16 -1.49 16 8 C 0.10 1.33 6.04 -4.03 -0.02 1.30 16 9 N -0.61 -10.00 2.67 -167.47 -0.45 -10.44 16 10 C 0.57 12.37 7.29 -12.31 -0.09 12.28 16 11 O -0.53 -13.08 16.41 5.32 0.09 -12.99 16 12 C -0.12 -2.86 5.17 -105.04 -0.54 -3.40 16 13 C -0.23 -4.85 7.34 -38.92 -0.29 -5.13 16 14 C -0.09 -1.98 10.01 -39.73 -0.40 -2.37 16 15 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 16 C 0.10 2.74 5.57 -106.87 -0.59 2.14 16 17 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 18 H 0.08 2.05 7.90 -52.48 -0.41 1.63 16 19 C 0.07 1.82 5.15 -17.35 -0.09 1.73 16 20 N -0.78 -20.72 10.95 55.55 0.61 -20.11 16 21 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.10 -2.71 8.32 -38.45 -0.32 -3.03 16 26 H 0.08 0.90 6.86 -51.93 -0.36 0.55 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.56 7.11 -51.93 -0.37 0.19 16 29 H 0.10 0.74 7.87 -51.93 -0.41 0.33 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.40 7.00 -51.93 -0.36 1.04 16 34 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 35 H 0.10 1.77 4.80 -52.49 -0.25 1.52 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.13 3.59 6.17 -52.48 -0.32 3.26 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -30.90 318.71 -8.06 -38.96 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.79 Total: 6.94 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.40 Total: -13.19 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.16 Total: -30.55 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.19 Total: -20.63 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.90 -8.06 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885036682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.469 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds