Wall clock time and date at job start Tue Mar 31 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.82194 * 2 1 4 4 C 1.51503 * 109.82966 * 239.05609 * 2 1 3 5 5 O 1.20762 * 121.02401 * 106.63949 * 4 2 1 6 6 C 1.51326 * 117.95854 * 286.63203 * 4 2 1 7 7 C 1.53240 * 108.64563 * 307.39978 * 6 4 2 8 8 C 1.52619 * 109.50131 * 56.05213 * 7 6 4 9 9 N 1.46877 * 109.53269 * 301.85061 * 8 7 6 10 10 C 1.34772 * 120.71491 * 237.05537 * 9 8 7 11 11 O 1.21554 * 120.00290 * 354.97337 * 10 9 8 12 12 C 1.47886 * 120.00099 * 174.97292 * 10 9 8 13 13 C 1.39926 * 120.02423 * 45.49482 * 12 10 9 14 14 C 1.38325 * 120.36015 * 180.30670 * 13 12 10 15 15 C 1.37754 * 120.41013 * 359.71831 * 14 13 12 16 16 C 1.40748 * 120.03997 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17919 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99259 * 334.99165 * 17 16 15 19 19 C 1.39928 * 120.00128 * 154.99759 * 17 16 15 20 20 N 1.30825 * 120.00128 * 342.92558 * 19 17 16 21 21 Si 1.86804 * 119.99926 * 162.93249 * 19 17 16 22 22 H 1.48496 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47344 * 119.99954 * 21 19 17 24 24 H 1.48508 * 109.46805 * 239.99722 * 21 19 17 25 25 C 1.38985 * 120.03079 * 225.22109 * 12 10 9 26 26 H 1.08998 * 109.47531 * 299.12596 * 1 2 3 27 27 H 1.09002 * 109.47173 * 59.12393 * 1 2 3 28 28 H 1.08996 * 109.47568 * 179.12009 * 1 2 3 29 29 H 1.08999 * 109.61298 * 67.14369 * 6 4 2 30 30 H 1.08997 * 109.60940 * 187.65531 * 6 4 2 31 31 H 1.09002 * 109.47689 * 176.16742 * 7 6 4 32 32 H 1.08997 * 109.47434 * 296.18424 * 7 6 4 33 33 H 1.08999 * 109.39820 * 181.81814 * 8 7 6 34 34 H 1.08994 * 109.34622 * 61.85425 * 8 7 6 35 35 H 1.08001 * 119.82009 * 0.04943 * 13 12 10 36 36 H 1.07997 * 119.79520 * 179.70551 * 14 13 12 37 37 H 1.08001 * 119.98320 * 179.97438 * 15 14 13 38 38 H 0.97001 * 119.99817 * 179.97438 * 20 19 17 39 39 H 1.08003 * 120.19978 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0439 -0.7328 -1.2223 5 8 2.5338 -0.1318 -2.1481 6 6 1.9246 -2.2412 -1.2475 7 6 2.5501 -2.8035 0.0334 8 6 1.8785 -2.1704 1.2489 9 7 2.0293 -0.7107 1.1884 10 6 2.6169 -0.0370 2.1970 11 8 2.9464 -0.6239 3.2092 12 6 2.8610 1.4162 2.0722 13 6 1.8541 2.2558 1.5832 14 6 2.0770 3.6152 1.4577 15 6 3.2903 4.1591 1.8179 16 6 4.3129 3.3312 2.3179 17 6 5.5599 3.8864 2.6881 18 1 5.8924 4.8124 2.2424 19 6 6.3630 3.2360 3.6315 20 7 5.8462 2.3210 4.4108 21 14 8.1729 3.6743 3.7785 22 1 8.5080 4.7311 2.7905 23 1 8.4522 4.1714 5.1496 24 1 8.9975 2.4684 3.5116 25 6 4.0886 1.9500 2.4460 26 1 -0.3634 0.5002 0.8977 27 1 -0.3633 0.5274 -0.8820 28 1 -0.3634 -1.0275 -0.0158 29 1 0.8732 -2.5243 -1.2958 30 1 2.4525 -2.6354 -2.1159 31 1 2.4112 -3.8843 0.0616 32 1 3.6155 -2.5735 0.0489 33 1 2.3464 -2.5473 2.1583 34 1 0.8192 -2.4271 1.2506 35 1 0.8991 1.8396 1.2983 36 1 1.2950 4.2541 1.0747 37 1 3.4570 5.2213 1.7167 38 1 6.4030 1.8699 5.0646 39 1 4.8671 1.3064 2.8285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885036682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:12 Heat of formation + Delta-G solvation = -69.233731 kcal Electronic energy + Delta-G solvation = -23014.349017 eV Core-core repulsion = 19692.813813 eV Total energy + Delta-G solvation = -3321.535203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87908 -40.28320 -38.94500 -37.57782 -35.72125 -34.34002 -32.17885 -31.89279 -31.33133 -28.31487 -27.32850 -25.54159 -24.24057 -23.17133 -22.78638 -21.28432 -19.75164 -19.10341 -17.92419 -17.81050 -16.90963 -16.86864 -16.48351 -16.25277 -16.00954 -15.67456 -15.51555 -14.99093 -14.61600 -14.48687 -14.21569 -14.00210 -13.58815 -13.51864 -13.29342 -13.08865 -12.99402 -12.83119 -12.58391 -12.42474 -12.16034 -12.12219 -12.02140 -11.97262 -11.53106 -11.12293 -11.08076 -10.54458 -9.74656 -9.43639 -9.40399 -8.68742 -6.42029 0.47478 0.72436 0.95373 1.34126 1.43236 1.50733 1.77160 1.97409 2.16522 2.66960 2.91273 3.56595 3.59588 3.63798 3.87528 3.94220 4.09561 4.32281 4.36005 4.41648 4.52418 4.60257 4.67185 4.71529 4.84370 4.87142 4.90447 5.03763 5.05421 5.11655 5.15824 5.26134 5.30094 5.45752 5.52983 5.79597 5.90851 5.98323 6.10792 6.25510 6.38069 6.55801 6.84607 6.89956 7.10268 8.27694 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005131 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.835828 B = 5455.624969 C = 5844.127430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 H 0.112 0.888 4 C 0.357 3.643 5 O -0.486 6.486 6 C -0.159 4.159 7 C -0.121 4.121 8 C 0.096 3.904 9 N -0.596 5.596 10 C 0.567 3.433 11 O -0.577 6.577 12 C -0.133 4.133 13 C -0.210 4.210 14 C -0.093 4.093 15 C -0.221 4.221 16 C 0.071 3.929 17 C -0.496 4.496 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.826 5.826 21 Si 0.983 3.017 22 H -0.252 1.252 23 H -0.263 1.263 24 H -0.269 1.269 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.287 0.713 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 -9.625 -9.399 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.037 4.037 3 H 0.129 0.871 4 C 0.233 3.767 5 O -0.359 6.359 6 C -0.196 4.196 7 C -0.159 4.159 8 C -0.025 4.025 9 N -0.331 5.331 10 C 0.358 3.642 11 O -0.457 6.457 12 C -0.136 4.136 13 C -0.229 4.229 14 C -0.111 4.111 15 C -0.241 4.241 16 C 0.069 3.931 17 C -0.525 4.525 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.175 1.175 23 H -0.188 1.188 24 H -0.194 1.194 25 C -0.159 4.159 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.160 0.840 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.924 -9.792 -9.169 16.687 hybrid contribution 1.227 0.401 0.650 1.445 sum -8.697 -9.391 -8.520 15.376 Atomic orbital electron populations 1.22102 0.89302 1.05222 1.04274 1.22700 0.98834 0.98777 0.83393 0.87074 1.25720 0.71718 0.93999 0.85260 1.90422 1.34226 1.72874 1.38410 1.22374 1.06399 0.90496 1.00350 1.21822 0.99150 1.02984 0.91940 1.21831 1.03327 0.77524 0.99825 1.48091 1.58865 1.08340 1.17774 1.18789 0.75427 0.87568 0.82403 1.90688 1.53345 1.70776 1.30914 1.19751 0.96924 0.92168 1.04793 1.20985 0.99010 0.93835 1.09108 1.20930 0.96603 0.94784 0.98752 1.21398 0.94331 0.98557 1.09770 1.17934 0.93549 0.91339 0.90273 1.19898 1.02374 1.08833 1.21443 0.89802 1.26879 1.05305 0.93306 0.93085 1.69920 1.39142 1.20967 1.15088 0.85141 0.75740 0.79353 0.79399 1.17486 1.18773 1.19387 1.21260 0.96121 0.95569 1.02974 0.90864 0.89161 0.88639 0.83954 0.88237 0.85276 0.93767 0.90388 0.87117 0.84435 0.84354 0.87328 0.90254 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.77 71.98 0.63 -2.03 16 2 C 0.07 1.82 2.36 44.36 0.10 1.92 16 3 H 0.11 3.78 4.54 -2.39 -0.01 3.77 16 4 C 0.36 9.26 6.18 29.56 0.18 9.44 16 5 O -0.49 -16.49 17.90 -1.46 -0.03 -16.52 16 6 C -0.16 -2.50 6.01 30.13 0.18 -2.32 16 7 C -0.12 -2.09 6.07 30.55 0.19 -1.91 16 8 C 0.10 2.17 6.04 86.18 0.52 2.69 16 9 N -0.60 -18.86 2.67 -802.04 -2.14 -21.00 16 10 C 0.57 25.12 7.29 86.80 0.63 25.75 16 11 O -0.58 -29.67 16.41 -3.89 -0.06 -29.73 16 12 C -0.13 -6.46 5.17 -20.13 -0.10 -6.56 16 13 C -0.21 -8.62 7.34 22.70 0.17 -8.45 16 14 C -0.09 -3.81 10.01 22.18 0.22 -3.59 16 15 C -0.22 -10.63 9.78 22.77 0.22 -10.41 16 16 C 0.07 3.97 5.57 -21.32 -0.12 3.85 16 17 C -0.50 -27.51 9.05 23.47 0.21 -27.30 16 18 H 0.08 4.40 7.90 -2.91 -0.02 4.38 16 19 C 0.03 1.54 5.15 85.25 0.44 1.98 16 20 N -0.83 -46.76 10.95 21.82 0.24 -46.52 16 21 Si 0.98 40.05 29.59 68.60 2.03 42.08 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 25 C -0.14 -7.84 8.32 23.00 0.19 -7.65 16 26 H 0.07 1.39 6.86 -2.39 -0.02 1.37 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.09 7.11 -2.39 -0.02 1.07 16 29 H 0.14 1.11 7.87 -2.39 -0.02 1.09 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16 34 H 0.11 1.64 7.53 -2.39 -0.02 1.62 16 35 H 0.14 4.52 4.80 -2.91 -0.01 4.50 16 36 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 39 H 0.09 5.79 6.17 -2.91 -0.02 5.78 16 Total: -1.00 -75.56 318.71 4.79 -70.77 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 1.07 Total: 25.50 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.67 Total: -24.57 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -1.90 Total: -67.52 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.09 Total: -46.25 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -75.56 4.79 -70.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885036682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.539 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds