Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.86710 * 2 1 4 4 C 1.51501 * 109.82882 * 120.90926 * 2 1 3 5 5 O 1.20757 * 121.01700 * 345.68538 * 4 2 1 6 6 C 1.51322 * 117.95429 * 165.41387 * 4 2 1 7 7 C 1.53229 * 108.65252 * 307.68035 * 6 4 2 8 8 C 1.53097 * 109.42867 * 56.17975 * 7 6 4 9 9 N 1.46757 * 109.78761 * 239.34971 * 2 1 3 10 10 C 1.34777 * 120.62247 * 12.01473 * 9 2 1 11 11 O 1.21580 * 120.00103 * 354.30708 * 10 9 2 12 12 C 1.47649 * 119.99926 * 174.30942 * 10 9 2 13 13 C 1.40010 * 119.89347 * 311.89896 * 12 10 9 14 14 C 1.36323 * 120.10490 * 179.72220 * 13 12 10 15 15 C 1.40888 * 119.88971 * 0.52768 * 14 13 12 16 16 C 1.41106 * 120.10023 * 179.72401 * 15 14 13 17 17 H 1.07998 * 119.99901 * 209.26953 * 16 15 14 18 18 C 1.40222 * 120.00294 * 29.27233 * 16 15 14 19 19 N 1.30646 * 120.00111 * 11.31338 * 18 16 15 20 20 Si 1.86807 * 120.00047 * 191.31606 * 18 16 15 21 21 H 1.48490 * 109.47082 * 59.99863 * 20 18 16 22 22 H 1.48498 * 109.46851 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46822 * 299.99555 * 20 18 16 24 24 C 1.40888 * 119.79188 * 359.74735 * 15 14 13 25 25 C 1.36319 * 119.89396 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.46982 * 292.76911 * 1 2 3 27 27 H 1.09003 * 109.47160 * 52.76854 * 1 2 3 28 28 H 1.09000 * 109.46960 * 172.76563 * 1 2 3 29 29 H 1.09001 * 109.60636 * 67.43098 * 6 4 2 30 30 H 1.09003 * 109.60378 * 187.76431 * 6 4 2 31 31 H 1.09005 * 109.48026 * 176.16886 * 7 6 4 32 32 H 1.09000 * 109.47496 * 296.19270 * 7 6 4 33 33 H 1.08994 * 109.50955 * 61.57303 * 8 7 6 34 34 H 1.09005 * 109.50385 * 181.65126 * 8 7 6 35 35 H 1.08003 * 119.94982 * 359.97438 * 13 12 10 36 36 H 1.08001 * 120.05166 * 180.29977 * 14 13 12 37 37 H 0.97005 * 120.00108 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.04706 * 179.97438 * 24 15 14 39 39 H 1.08001 * 119.94438 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0440 -0.7321 1.2228 5 8 1.3117 -0.9880 2.1483 6 6 3.5015 -1.1383 1.2459 7 6 3.8141 -1.9152 -0.0372 8 6 3.4508 -1.0583 -1.2528 9 7 2.0269 -0.7040 -1.1880 10 6 1.1919 -1.0214 -2.1972 11 8 -0.0016 -0.8182 -2.0855 12 6 1.7265 -1.6159 -3.4385 13 6 2.8365 -1.0386 -4.0669 14 6 3.3372 -1.5873 -5.2100 15 6 2.7289 -2.7305 -5.7650 16 6 3.2399 -3.2986 -6.9512 17 1 2.5803 -3.8236 -7.6263 18 6 4.6041 -3.1817 -7.2536 19 7 5.4392 -2.7476 -6.3475 20 14 5.2275 -3.6465 -8.9522 21 1 4.5599 -2.8000 -9.9732 22 1 6.6957 -3.4331 -9.0160 23 1 4.9225 -5.0754 -9.2174 24 6 1.6086 -3.3043 -5.1321 25 6 1.1186 -2.7519 -3.9862 26 1 -0.3633 0.3977 0.9476 27 1 -0.3633 0.6218 -0.8182 28 1 -0.3633 -1.0195 -0.1294 29 1 4.1285 -0.2481 1.2965 30 1 3.6915 -1.7694 2.1141 31 1 4.8769 -2.1559 -0.0667 32 1 3.2321 -2.8367 -0.0551 33 1 4.0525 -0.1495 -1.2503 34 1 3.6453 -1.6209 -2.1659 35 1 3.2994 -0.1597 -3.6431 36 1 4.1965 -1.1442 -5.6913 37 1 6.3829 -2.6664 -6.5568 38 1 1.1388 -4.1804 -5.5542 39 1 0.2600 -3.1914 -3.5002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885049903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = -43.524832 kcal Electronic energy + Delta-G solvation = -22711.443391 eV Core-core repulsion = 19391.023009 eV Total energy + Delta-G solvation = -3320.420382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59878 -38.88122 -37.29442 -36.11901 -33.93727 -32.88802 -31.55951 -29.66520 -29.56240 -27.08819 -25.89590 -24.39201 -22.13154 -21.85428 -20.94455 -19.82585 -18.61820 -17.53394 -16.63219 -16.09698 -15.96153 -15.46303 -15.22735 -14.76265 -14.32587 -14.26961 -13.96628 -13.44244 -13.04439 -12.85093 -12.69021 -12.52103 -12.22424 -12.16307 -11.88039 -11.76494 -11.46774 -11.43651 -11.26674 -11.12756 -11.05482 -10.92624 -10.57933 -10.03877 -9.81163 -9.57581 -9.41097 -8.58721 -8.28038 -7.74005 -7.51943 -6.98002 -4.62525 1.80193 2.28299 2.93138 2.93671 2.95223 2.98011 3.31006 3.55111 3.76251 3.94252 4.45509 4.66190 4.81270 4.84835 5.14651 5.26335 5.35069 5.45712 5.51056 5.56226 5.74350 5.81023 5.98732 6.03537 6.09780 6.12852 6.18882 6.26910 6.53351 6.73745 6.83150 6.86698 6.98427 7.08347 7.36614 7.41162 7.52496 7.75791 7.82579 7.90924 8.04957 8.38665 8.63201 8.71461 8.81913 9.94268 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.004132 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.355134 B = 6774.155071 C = 7370.717382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.099 3.901 3 H 0.094 0.906 4 C 0.354 3.646 5 O -0.448 6.448 6 C -0.170 4.170 7 C -0.129 4.129 8 C 0.098 3.902 9 N -0.611 5.611 10 C 0.582 3.418 11 O -0.550 6.550 12 C -0.272 4.272 13 C -0.069 4.069 14 C -0.167 4.167 15 C 0.127 3.873 16 C -0.450 4.450 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.785 5.785 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.230 4.230 25 C -0.035 4.035 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.285 0.715 38 H 0.098 0.902 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 3.641 7.771 9.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.005 4.005 3 H 0.112 0.888 4 C 0.227 3.773 5 O -0.319 6.319 6 C -0.208 4.208 7 C -0.167 4.167 8 C -0.025 4.025 9 N -0.348 5.348 10 C 0.376 3.624 11 O -0.429 6.429 12 C -0.277 4.277 13 C -0.088 4.088 14 C -0.186 4.186 15 C 0.124 3.876 16 C -0.478 4.478 17 H 0.100 0.900 18 C -0.145 4.145 19 N -0.409 5.409 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.249 4.249 25 C -0.054 4.054 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.278 3.650 8.370 9.411 hybrid contribution 0.690 -0.185 -0.676 0.984 sum 2.969 3.465 7.694 8.945 Atomic orbital electron populations 1.22035 0.90774 1.04729 1.00818 1.21794 0.97900 0.96235 0.84584 0.88842 1.25394 0.90498 0.74870 0.86517 1.90379 1.60179 1.44296 1.37086 1.22343 0.95222 1.02556 1.00641 1.21921 1.02898 0.99163 0.92716 1.21992 0.80556 0.99527 1.00421 1.48026 1.09708 1.59544 1.17495 1.18817 0.85171 0.75748 0.82680 1.90718 1.16042 1.54375 1.81749 1.18840 1.04596 1.04888 0.99349 1.20461 0.94032 0.97927 0.96373 1.21015 1.02648 0.97276 0.97692 1.17762 0.89576 0.89172 0.91106 1.19749 0.93378 1.29966 1.04726 0.89990 1.26013 0.96948 0.92873 0.98677 1.69685 1.04766 1.32714 1.33760 0.86254 0.77970 0.80231 0.81730 1.18631 1.20121 1.18787 1.20741 1.03275 1.02621 0.98292 1.20220 0.96257 0.93849 0.95068 0.93634 0.90018 0.91016 0.88303 0.89394 0.89319 0.90952 0.91412 0.86496 0.88906 0.86007 0.90386 0.88380 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.20 37.16 0.27 -1.78 16 2 C 0.10 1.43 3.73 -68.55 -0.26 1.17 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.35 4.86 6.70 -28.34 -0.19 4.67 16 5 O -0.45 -7.39 16.79 6.00 0.10 -7.29 16 6 C -0.17 -1.76 6.14 -27.46 -0.17 -1.93 16 7 C -0.13 -1.45 6.09 -26.56 -0.16 -1.61 16 8 C 0.10 1.31 5.22 -3.79 -0.02 1.29 16 9 N -0.61 -9.81 2.97 -167.59 -0.50 -10.30 16 10 C 0.58 11.58 7.10 -12.42 -0.09 11.49 16 11 O -0.55 -12.07 12.54 5.30 0.07 -12.01 16 12 C -0.27 -5.80 4.89 -104.73 -0.51 -6.31 16 13 C -0.07 -1.44 7.41 -39.61 -0.29 -1.73 16 14 C -0.17 -3.89 8.59 -39.27 -0.34 -4.23 16 15 C 0.13 3.10 5.54 -106.80 -0.59 2.51 16 16 C -0.45 -10.91 9.05 -37.75 -0.34 -11.25 16 17 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 18 C 0.07 1.69 5.24 -17.31 -0.09 1.60 16 19 N -0.79 -18.15 10.89 55.56 0.61 -17.54 16 20 Si 0.91 17.05 29.58 -169.99 -5.03 12.02 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 22 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 24 C -0.23 -5.32 9.73 -39.27 -0.38 -5.70 16 25 C -0.03 -0.77 9.64 -39.61 -0.38 -1.15 16 26 H 0.04 0.67 7.79 -51.93 -0.40 0.26 16 27 H 0.08 1.40 6.70 -51.93 -0.35 1.06 16 28 H 0.07 1.34 6.86 -51.93 -0.36 0.98 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.86 4.94 -51.93 -0.26 1.60 16 35 H 0.09 1.71 7.30 -52.48 -0.38 1.33 16 36 H 0.12 2.91 6.26 -52.49 -0.33 2.58 16 37 H 0.28 5.98 8.29 -40.82 -0.34 5.64 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -27.42 317.36 -8.53 -35.95 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.01 Total: 7.36 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -3.55 Total: -12.96 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.11 Total: -27.85 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.17 Total: -19.30 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.42 -8.53 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885049903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.579 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds