Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.53735 * 2 1 4 4 C 1.53107 * 109.50833 * 239.90004 * 2 1 3 5 5 C 1.53226 * 109.43107 * 181.69099 * 4 2 1 6 6 C 1.51327 * 108.65198 * 56.17615 * 5 4 2 7 7 O 1.20756 * 121.02074 * 127.40458 * 6 5 4 8 8 C 1.51900 * 117.88712 * 307.25321 * 6 5 4 9 9 N 1.46875 * 109.50819 * 120.10067 * 2 1 3 10 10 C 1.34777 * 120.71074 * 357.01106 * 9 2 1 11 11 O 1.21545 * 120.00370 * 355.55868 * 10 9 2 12 12 C 1.47883 * 119.99658 * 175.82984 * 10 9 2 13 13 C 1.39923 * 120.02714 * 33.85354 * 12 10 9 14 14 C 1.38328 * 120.35752 * 179.71522 * 13 12 10 15 15 C 1.37749 * 120.41502 * 0.55626 * 14 13 12 16 16 C 1.40748 * 120.03521 * 359.72110 * 15 14 13 17 17 C 1.41437 * 120.17511 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00395 * 330.66286 * 17 16 15 19 19 C 1.39942 * 120.00142 * 150.66244 * 17 16 15 20 20 N 1.30823 * 119.99704 * 349.56310 * 19 17 16 21 21 Si 1.86798 * 120.00071 * 169.56236 * 19 17 16 22 22 H 1.48499 * 109.47341 * 60.00037 * 21 19 17 23 23 H 1.48503 * 109.47073 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47099 * 299.99705 * 21 19 17 25 25 C 1.39000 * 120.02657 * 214.12459 * 12 10 9 26 26 H 1.08998 * 109.47355 * 299.89699 * 1 2 3 27 27 H 1.09001 * 109.47255 * 59.90319 * 1 2 3 28 28 H 1.09000 * 109.46698 * 179.89468 * 1 2 3 29 29 H 1.09006 * 109.47291 * 301.67772 * 4 2 1 30 30 H 1.08998 * 109.47812 * 61.69248 * 4 2 1 31 31 H 1.09007 * 109.60909 * 175.92699 * 5 4 2 32 32 H 1.09005 * 109.60972 * 296.25689 * 5 4 2 33 33 H 1.09005 * 109.98571 * 286.92941 * 8 6 5 34 34 H 1.09002 * 109.88123 * 165.86111 * 8 6 5 35 35 H 1.08002 * 119.81595 * 359.97438 * 13 12 10 36 36 H 1.08004 * 119.79282 * 180.30275 * 14 13 12 37 37 H 1.07995 * 119.98306 * 179.69737 * 15 14 13 38 38 H 0.97006 * 119.99879 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.19883 * 0.02763 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2486 5 6 3.5729 -0.7597 -1.2256 6 6 4.0224 -1.4136 0.0630 7 8 4.7957 -2.3410 0.0535 8 6 3.4727 -0.8639 1.3680 9 7 2.0204 -0.6943 1.1977 10 6 1.1595 -1.1612 2.1237 11 8 -0.0305 -0.9396 2.0137 12 6 1.6635 -1.9381 3.2767 13 6 2.9128 -1.6381 3.8308 14 6 3.3883 -2.3566 4.9130 15 6 2.6430 -3.3828 5.4506 16 6 1.3866 -3.7028 4.9029 17 6 0.6191 -4.7563 5.4522 18 1 1.1112 -5.5928 5.9260 19 6 -0.7779 -4.7147 5.3818 20 7 -1.3811 -3.6195 4.9969 21 14 -1.7813 -6.2230 5.8374 22 1 -1.5042 -6.5943 7.2482 23 1 -3.2269 -5.9221 5.6790 24 1 -1.4107 -7.3517 4.9464 25 6 0.8990 -2.9707 3.8072 26 1 -0.3634 0.5122 0.8909 27 1 -0.3634 0.5153 -0.8891 28 1 -0.3633 -1.0277 -0.0019 29 1 1.6539 -1.7426 -1.2622 30 1 1.7033 -0.1945 -2.1395 31 1 3.9381 -1.3367 -2.0753 32 1 3.9635 0.2565 -1.2786 33 1 3.9337 0.0985 1.5905 34 1 3.6704 -1.5656 2.1784 35 1 3.5072 -0.8386 3.4138 36 1 4.3517 -2.1140 5.3366 37 1 3.0232 -3.9423 6.2924 38 1 -2.3495 -3.5908 4.9477 39 1 -0.0637 -3.2089 3.3797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885096995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -21.831918 kcal Electronic energy + Delta-G solvation = -22976.693051 eV Core-core repulsion = 19657.213344 eV Total energy + Delta-G solvation = -3319.479707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58329 -38.89673 -37.39148 -36.05884 -34.04792 -32.97434 -31.17210 -29.80111 -29.52194 -27.05439 -25.46716 -24.58731 -22.99445 -21.50601 -20.82736 -19.77794 -18.76854 -17.50511 -16.32228 -16.01095 -15.67345 -15.39540 -15.12588 -15.03089 -14.59453 -14.35162 -13.93688 -13.42297 -13.18773 -12.88456 -12.72757 -12.47959 -12.27142 -12.12317 -11.92321 -11.70994 -11.44929 -11.23526 -11.14381 -11.06955 -10.93927 -10.73515 -10.47146 -9.96936 -9.83685 -9.53784 -9.27083 -8.48719 -8.31858 -7.64554 -7.48273 -6.76052 -4.46356 1.84992 2.21171 2.77078 3.06484 3.08412 3.11807 3.24301 3.62759 3.91141 4.00780 4.56837 4.62979 4.71606 4.80527 5.10384 5.24802 5.30040 5.38233 5.51073 5.57974 5.60992 5.72892 5.89481 5.94447 5.99183 6.04673 6.20555 6.34788 6.52896 6.66753 6.91388 6.95320 6.97836 7.18482 7.34640 7.37293 7.58768 7.70120 7.79135 7.94255 8.12930 8.46653 8.76115 8.78518 8.81766 10.17453 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.005125 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.715141 B = 5462.019354 C = 6151.373590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.126 4.126 5 C -0.171 4.171 6 C 0.351 3.649 7 O -0.446 6.446 8 C 0.031 3.969 9 N -0.610 5.610 10 C 0.571 3.429 11 O -0.525 6.525 12 C -0.127 4.127 13 C -0.236 4.236 14 C -0.096 4.096 15 C -0.207 4.207 16 C 0.103 3.897 17 C -0.461 4.461 18 H 0.080 0.920 19 C 0.071 3.929 20 N -0.790 5.790 21 Si 0.913 3.087 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.091 4.091 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.284 0.716 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 6.863 -9.516 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.164 4.164 5 C -0.209 4.209 6 C 0.224 3.776 7 O -0.317 6.317 8 C -0.092 4.092 9 N -0.347 5.347 10 C 0.363 3.637 11 O -0.401 6.401 12 C -0.131 4.131 13 C -0.255 4.255 14 C -0.114 4.114 15 C -0.227 4.227 16 C 0.100 3.900 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.147 4.147 20 N -0.415 5.415 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.111 4.111 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.174 0.826 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.054 6.575 -9.615 12.698 hybrid contribution -0.391 -0.413 0.161 0.591 sum 4.664 6.162 -9.454 12.211 Atomic orbital electron populations 1.22253 0.92049 1.03775 1.01466 1.21265 0.96489 0.94924 0.83678 0.91004 1.22016 0.93163 1.02523 0.98734 1.22349 0.97886 1.03054 0.97637 1.25446 0.77499 0.81525 0.93115 1.90420 1.28079 1.23581 1.89647 1.23650 0.81675 1.04677 0.99148 1.47999 1.05303 1.59130 1.22256 1.18911 0.85328 0.77668 0.81792 1.90766 1.15984 1.57249 1.76147 1.19504 0.96386 0.99932 0.97238 1.20728 0.96704 1.05370 1.02706 1.20487 0.98164 0.96695 0.96077 1.21176 0.98439 1.00951 1.02136 1.17601 0.91100 0.91747 0.89550 1.19560 0.90823 1.05457 1.33209 0.90171 1.25953 0.98665 0.96894 0.93232 1.69761 1.11560 1.26082 1.34092 0.86284 0.78332 0.81665 0.79974 1.18955 1.20232 1.18833 1.21554 0.99077 0.95202 0.95241 0.89595 0.94246 0.91471 0.90910 0.89698 0.89401 0.88361 0.88746 0.82618 0.87446 0.88673 0.88488 0.90446 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.59 37.15 0.28 -1.74 16 2 C 0.14 1.80 3.39 -67.67 -0.23 1.57 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.34 5.37 -26.56 -0.14 -1.48 16 5 C -0.17 -1.73 6.14 -27.46 -0.17 -1.89 16 6 C 0.35 4.83 6.88 -28.13 -0.19 4.64 16 7 O -0.45 -7.64 17.90 6.00 0.11 -7.53 16 8 C 0.03 0.44 5.06 -4.22 -0.02 0.42 16 9 N -0.61 -9.85 2.97 -166.95 -0.50 -10.34 16 10 C 0.57 11.93 7.32 -12.31 -0.09 11.84 16 11 O -0.52 -12.10 12.23 5.33 0.07 -12.03 16 12 C -0.13 -2.93 5.51 -105.04 -0.58 -3.51 16 13 C -0.24 -4.83 7.43 -38.92 -0.29 -5.12 16 14 C -0.10 -2.01 10.01 -39.73 -0.40 -2.41 16 15 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 16 C 0.10 2.68 5.54 -106.87 -0.59 2.09 16 17 C -0.46 -12.02 9.06 -37.73 -0.34 -12.36 16 18 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.78 5.25 -17.34 -0.09 1.69 16 20 N -0.79 -20.83 10.86 55.55 0.60 -20.22 16 21 Si 0.91 18.72 29.57 -169.99 -5.03 13.70 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.09 -2.36 8.21 -38.44 -0.32 -2.68 16 26 H 0.09 1.47 6.37 -51.93 -0.33 1.14 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.14 7.08 -51.93 -0.37 0.78 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.16 2.58 3.81 -51.94 -0.20 2.38 16 35 H 0.11 1.83 5.27 -52.49 -0.28 1.56 16 36 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 39 H 0.13 3.66 6.18 -52.49 -0.32 3.34 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -29.75 315.34 -8.39 -38.14 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.85 Total: 7.73 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -3.55 Total: -14.19 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.11 Total: -30.57 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.17 Total: -19.57 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.75 -8.39 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885096995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.311 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds