Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.53735 * 2 1 4 4 C 1.53107 * 109.50833 * 239.90004 * 2 1 3 5 5 C 1.53226 * 109.43107 * 181.69099 * 4 2 1 6 6 C 1.51327 * 108.65198 * 56.17615 * 5 4 2 7 7 O 1.20756 * 121.02074 * 127.40458 * 6 5 4 8 8 C 1.51900 * 117.88712 * 307.25321 * 6 5 4 9 9 N 1.46875 * 109.50819 * 120.10067 * 2 1 3 10 10 C 1.34777 * 120.71074 * 357.01106 * 9 2 1 11 11 O 1.21545 * 120.00370 * 355.55868 * 10 9 2 12 12 C 1.47883 * 119.99658 * 175.82984 * 10 9 2 13 13 C 1.39923 * 120.02714 * 33.85354 * 12 10 9 14 14 C 1.38328 * 120.35752 * 179.71522 * 13 12 10 15 15 C 1.37749 * 120.41502 * 0.55626 * 14 13 12 16 16 C 1.40748 * 120.03521 * 359.72110 * 15 14 13 17 17 C 1.41437 * 120.17511 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00395 * 330.66286 * 17 16 15 19 19 C 1.39942 * 120.00142 * 150.66244 * 17 16 15 20 20 N 1.30823 * 119.99704 * 349.56310 * 19 17 16 21 21 Si 1.86798 * 120.00071 * 169.56236 * 19 17 16 22 22 H 1.48499 * 109.47341 * 60.00037 * 21 19 17 23 23 H 1.48503 * 109.47073 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47099 * 299.99705 * 21 19 17 25 25 C 1.39000 * 120.02657 * 214.12459 * 12 10 9 26 26 H 1.08998 * 109.47355 * 299.89699 * 1 2 3 27 27 H 1.09001 * 109.47255 * 59.90319 * 1 2 3 28 28 H 1.09000 * 109.46698 * 179.89468 * 1 2 3 29 29 H 1.09006 * 109.47291 * 301.67772 * 4 2 1 30 30 H 1.08998 * 109.47812 * 61.69248 * 4 2 1 31 31 H 1.09007 * 109.60909 * 175.92699 * 5 4 2 32 32 H 1.09005 * 109.60972 * 296.25689 * 5 4 2 33 33 H 1.09005 * 109.98571 * 286.92941 * 8 6 5 34 34 H 1.09002 * 109.88123 * 165.86111 * 8 6 5 35 35 H 1.08002 * 119.81595 * 359.97438 * 13 12 10 36 36 H 1.08004 * 119.79282 * 180.30275 * 14 13 12 37 37 H 1.07995 * 119.98306 * 179.69737 * 15 14 13 38 38 H 0.97006 * 119.99879 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.19883 * 0.02763 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2486 5 6 3.5729 -0.7597 -1.2256 6 6 4.0224 -1.4136 0.0630 7 8 4.7957 -2.3410 0.0535 8 6 3.4727 -0.8639 1.3680 9 7 2.0204 -0.6943 1.1977 10 6 1.1595 -1.1612 2.1237 11 8 -0.0305 -0.9396 2.0137 12 6 1.6635 -1.9381 3.2767 13 6 2.9128 -1.6381 3.8308 14 6 3.3883 -2.3566 4.9130 15 6 2.6430 -3.3828 5.4506 16 6 1.3866 -3.7028 4.9029 17 6 0.6191 -4.7563 5.4522 18 1 1.1112 -5.5928 5.9260 19 6 -0.7779 -4.7147 5.3818 20 7 -1.3811 -3.6195 4.9969 21 14 -1.7813 -6.2230 5.8374 22 1 -1.5042 -6.5943 7.2482 23 1 -3.2269 -5.9221 5.6790 24 1 -1.4107 -7.3517 4.9464 25 6 0.8990 -2.9707 3.8072 26 1 -0.3634 0.5122 0.8909 27 1 -0.3634 0.5153 -0.8891 28 1 -0.3633 -1.0277 -0.0019 29 1 1.6539 -1.7426 -1.2622 30 1 1.7033 -0.1945 -2.1395 31 1 3.9381 -1.3367 -2.0753 32 1 3.9635 0.2565 -1.2786 33 1 3.9337 0.0985 1.5905 34 1 3.6704 -1.5656 2.1784 35 1 3.5072 -0.8386 3.4138 36 1 4.3517 -2.1140 5.3366 37 1 3.0232 -3.9423 6.2924 38 1 -2.3495 -3.5908 4.9477 39 1 -0.0637 -3.2089 3.3797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885096995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -39.626517 kcal Electronic energy + Delta-G solvation = -22977.464682 eV Core-core repulsion = 19657.213344 eV Total energy + Delta-G solvation = -3320.251338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91521 -40.22241 -39.08976 -37.41530 -35.77867 -34.35679 -32.32659 -31.51088 -31.26225 -28.31760 -27.31511 -25.66695 -24.43699 -23.10494 -22.34981 -21.09051 -20.15234 -19.18574 -17.76376 -17.46804 -17.08232 -16.86749 -16.57355 -16.23064 -15.81801 -15.79329 -15.42058 -15.07651 -14.55612 -14.38945 -14.22236 -13.93525 -13.58201 -13.50482 -13.29471 -13.08282 -12.84382 -12.73348 -12.55777 -12.46229 -12.24683 -12.10255 -11.99403 -11.73665 -11.53873 -11.11990 -10.79793 -10.02948 -9.63783 -9.38639 -9.32856 -8.61682 -6.42504 0.43795 0.76595 0.97818 1.34992 1.45919 1.48065 1.89379 2.03645 2.18666 2.73199 2.98684 3.60617 3.61385 3.69412 3.83391 3.96139 4.23598 4.29896 4.39607 4.46793 4.50451 4.54562 4.64731 4.81002 4.86226 4.87959 5.00265 5.02204 5.06300 5.16304 5.26620 5.27901 5.39439 5.49894 5.71230 5.79815 5.90367 6.01090 6.17710 6.28203 6.43037 6.58522 6.87341 6.91671 7.22743 8.33438 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.005125 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.715141 B = 5462.019354 C = 6151.373590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.133 3.867 3 H 0.114 0.886 4 C -0.119 4.119 5 C -0.160 4.160 6 C 0.353 3.647 7 O -0.487 6.487 8 C 0.024 3.976 9 N -0.600 5.600 10 C 0.563 3.437 11 O -0.559 6.559 12 C -0.140 4.140 13 C -0.213 4.213 14 C -0.097 4.097 15 C -0.215 4.215 16 C 0.068 3.932 17 C -0.500 4.500 18 H 0.082 0.918 19 C 0.027 3.973 20 N -0.833 5.833 21 Si 0.985 3.015 22 H -0.254 1.254 23 H -0.272 1.272 24 H -0.260 1.260 25 C -0.126 4.126 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.285 0.715 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 8.969 -11.200 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.132 0.868 4 C -0.157 4.157 5 C -0.197 4.197 6 C 0.229 3.771 7 O -0.361 6.361 8 C -0.098 4.098 9 N -0.335 5.335 10 C 0.355 3.645 11 O -0.439 6.439 12 C -0.143 4.143 13 C -0.231 4.231 14 C -0.115 4.115 15 C -0.235 4.235 16 C 0.066 3.934 17 C -0.530 4.530 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.459 5.459 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.196 1.196 24 H -0.185 1.185 25 C -0.147 4.147 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.143 0.857 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.399 8.706 -11.325 16.087 hybrid contribution -0.929 -0.910 0.582 1.425 sum 6.470 7.796 -10.743 14.766 Atomic orbital electron populations 1.22074 0.93781 1.01435 1.01739 1.21651 0.95216 0.96954 0.82987 0.86820 1.21993 0.93578 1.01217 0.98911 1.22364 0.96942 1.05102 0.95307 1.25854 0.76286 0.80583 0.94395 1.90427 1.30261 1.25284 1.90158 1.23767 0.80451 1.06419 0.99182 1.47966 1.05692 1.57788 1.22050 1.18708 0.85417 0.77979 0.82445 1.90773 1.17469 1.58653 1.77031 1.19895 0.97059 0.99196 0.98174 1.21297 0.95447 1.05183 1.01218 1.20981 0.99506 0.95347 0.95696 1.21466 0.97726 1.01822 1.02489 1.17955 0.92631 0.92610 0.90170 1.19834 0.91912 1.06242 1.35008 0.89993 1.26838 0.99448 0.99691 0.92693 1.69885 1.11675 1.28276 1.36103 0.85208 0.76669 0.77569 0.80015 1.17790 1.19625 1.18477 1.21348 0.98887 0.97790 0.96676 0.92625 0.90514 0.95197 0.93660 0.85709 0.88456 0.84086 0.84036 0.85288 0.83058 0.84278 0.87394 0.90446 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 7.59 71.98 0.55 -3.21 16 2 C 0.13 2.99 3.39 44.95 0.15 3.14 16 3 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.12 -2.05 5.37 30.71 0.17 -1.88 16 5 C -0.16 -2.41 6.14 30.12 0.18 -2.22 16 6 C 0.35 8.57 6.88 29.69 0.20 8.78 16 7 O -0.49 -15.83 17.90 -1.44 -0.03 -15.86 16 8 C 0.02 0.59 5.06 85.88 0.43 1.03 16 9 N -0.60 -18.20 2.97 -800.39 -2.38 -20.57 16 10 C 0.56 24.01 7.32 86.80 0.64 24.65 16 11 O -0.56 -27.25 12.23 -3.86 -0.05 -27.29 16 12 C -0.14 -6.61 5.51 -20.13 -0.11 -6.73 16 13 C -0.21 -8.40 7.43 22.70 0.17 -8.23 16 14 C -0.10 -3.91 10.01 22.18 0.22 -3.69 16 15 C -0.22 -10.24 9.78 22.77 0.22 -10.02 16 16 C 0.07 3.78 5.54 -21.32 -0.12 3.66 16 17 C -0.50 -27.67 9.06 23.47 0.21 -27.46 16 18 H 0.08 4.28 7.87 -2.91 -0.02 4.26 16 19 C 0.03 1.43 5.25 85.26 0.45 1.88 16 20 N -0.83 -47.22 10.86 21.83 0.24 -46.98 16 21 Si 0.98 40.23 29.57 68.60 2.03 42.26 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 C -0.13 -7.05 8.21 23.01 0.19 -6.86 16 26 H 0.05 1.92 6.37 -2.39 -0.02 1.90 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.03 1.04 7.08 -2.39 -0.02 1.03 16 29 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.14 2.26 8.08 -2.38 -0.02 2.24 16 34 H 0.13 3.94 3.81 -2.39 -0.01 3.94 16 35 H 0.15 4.58 5.27 -2.91 -0.02 4.57 16 36 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.29 14.95 8.30 -92.70 -0.77 14.18 16 39 H 0.10 5.92 6.18 -2.91 -0.02 5.90 16 Total: -1.00 -73.74 315.34 4.44 -69.30 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.07 Total: 26.32 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.56 Total: -27.18 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -2.14 Total: -67.55 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.07 Total: -43.15 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -73.74 4.44 -69.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885096995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.672 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds