Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.53737 * 2 1 4 4 C 1.53593 * 109.60682 * 120.36295 * 2 1 3 5 5 C 1.53225 * 109.35831 * 178.43050 * 4 2 1 6 6 C 1.51329 * 108.64805 * 303.69738 * 5 4 2 7 7 O 1.20767 * 121.01956 * 232.60964 * 6 5 4 8 8 C 1.51493 * 117.95893 * 52.59614 * 6 5 4 9 9 N 1.46874 * 109.50323 * 239.89416 * 2 1 3 10 10 C 1.34770 * 120.71592 * 2.97077 * 9 2 1 11 11 O 1.21553 * 120.00242 * 353.71702 * 10 9 2 12 12 C 1.47889 * 120.00079 * 173.99564 * 10 9 2 13 13 C 1.39917 * 120.02071 * 330.25479 * 12 10 9 14 14 C 1.38334 * 120.35583 * 179.71864 * 13 12 10 15 15 C 1.37756 * 120.41047 * 0.56174 * 14 13 12 16 16 C 1.40754 * 120.04110 * 359.71700 * 15 14 13 17 17 C 1.41428 * 120.18047 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00215 * 25.32383 * 17 16 15 19 19 C 1.39937 * 120.00153 * 205.33346 * 17 16 15 20 20 N 1.30823 * 119.99962 * 16.88973 * 19 17 16 21 21 Si 1.86799 * 119.99949 * 196.89709 * 19 17 16 22 22 H 1.48497 * 109.47339 * 59.99470 * 21 19 17 23 23 H 1.48497 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47044 * 299.99663 * 21 19 17 25 25 C 1.38990 * 120.02603 * 150.53458 * 12 10 9 26 26 H 1.08998 * 109.47383 * 180.10475 * 1 2 3 27 27 H 1.09005 * 109.47323 * 300.10684 * 1 2 3 28 28 H 1.09005 * 109.46992 * 60.10129 * 1 2 3 29 29 H 1.09007 * 109.61665 * 58.40105 * 4 2 1 30 30 H 1.08996 * 109.41121 * 298.33806 * 4 2 1 31 31 H 1.08993 * 109.60866 * 183.94434 * 5 4 2 32 32 H 1.09001 * 109.60631 * 63.44269 * 5 4 2 33 33 H 1.08997 * 109.83122 * 194.30776 * 8 6 5 34 34 H 1.08995 * 109.88331 * 73.40262 * 8 6 5 35 35 H 1.07994 * 119.82616 * 359.97438 * 13 12 10 36 36 H 1.08001 * 119.79669 * 180.25548 * 14 13 12 37 37 H 1.08001 * 119.97718 * 179.74403 * 15 14 13 38 38 H 0.97000 * 119.99725 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.20734 * 359.97204 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0454 -0.7314 1.2484 5 6 3.5772 -0.7623 1.2228 6 6 4.0266 -1.4106 -0.0686 7 8 4.8027 -2.3358 -0.0632 8 6 3.4727 -0.8637 -1.3682 9 7 2.0204 -0.6944 -1.1977 10 6 1.1595 -1.1617 -2.1234 11 8 -0.0378 -1.1131 -1.9194 12 6 1.6717 -1.7394 -3.3847 13 6 2.8813 -1.2856 -3.9221 14 6 3.3698 -1.8251 -5.0985 15 6 2.6658 -2.8068 -5.7606 16 6 1.4443 -3.2718 -5.2383 17 6 0.7188 -4.2792 -5.9158 18 1 1.2339 -4.9715 -6.5654 19 6 -0.6665 -4.3789 -5.7449 20 7 -1.3376 -3.3744 -5.2429 21 14 -1.5574 -5.9465 -6.2333 22 1 -1.0164 -7.0874 -5.4518 23 1 -3.0083 -5.7990 -5.9533 24 1 -1.3557 -6.1994 -7.6826 25 6 0.9491 -2.7292 -4.0403 26 1 -0.3634 -1.0276 0.0019 27 1 -0.3634 0.5155 0.8890 28 1 -0.3633 0.5123 -0.8909 29 1 1.6614 -1.7515 1.2596 30 1 1.7073 -0.2059 2.1415 31 1 3.9456 -1.3406 2.0700 32 1 3.9644 0.2553 1.2753 33 1 3.6705 -1.5651 -2.1787 34 1 3.9332 0.0986 -1.5917 35 1 3.4387 -0.5129 -3.4136 36 1 4.3065 -1.4710 -5.5031 37 1 3.0516 -3.2202 -6.6807 38 1 -2.2978 -3.4437 -5.1241 39 1 0.0129 -3.0797 -3.6314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885097094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = -28.519286 kcal Electronic energy + Delta-G solvation = -22948.215849 eV Core-core repulsion = 19628.446156 eV Total energy + Delta-G solvation = -3319.769693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57652 -38.91667 -37.36331 -36.04417 -34.04116 -32.98347 -31.18408 -29.80916 -29.49126 -27.05314 -25.44969 -24.59018 -22.99609 -21.47885 -20.83362 -19.79038 -18.76208 -17.49930 -16.32149 -15.99033 -15.61943 -15.28874 -15.20184 -15.05669 -14.56731 -14.45209 -13.94877 -13.33999 -13.17280 -12.88111 -12.74562 -12.47844 -12.33342 -12.15296 -11.94606 -11.69359 -11.49400 -11.23860 -11.14382 -11.03311 -10.97146 -10.75500 -10.51444 -9.95966 -9.82571 -9.60311 -9.23453 -8.52509 -8.30562 -7.64576 -7.52710 -6.81791 -4.44621 1.82116 2.20060 2.77681 3.05696 3.07222 3.13364 3.24293 3.65654 3.89506 4.00294 4.55048 4.61810 4.71220 4.78490 5.10001 5.22981 5.28790 5.37090 5.53376 5.58843 5.60653 5.71579 5.88852 5.93223 5.97269 6.07201 6.24994 6.33857 6.52637 6.68149 6.90420 6.95177 6.99605 7.17331 7.34238 7.35487 7.59286 7.71826 7.80878 7.93834 8.13034 8.46170 8.75624 8.78289 8.81855 10.12276 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.005066 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.758466 B = 5525.549572 C = 6176.367564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.171 4.171 6 C 0.350 3.650 7 O -0.447 6.447 8 C 0.048 3.952 9 N -0.611 5.611 10 C 0.570 3.430 11 O -0.525 6.525 12 C -0.128 4.128 13 C -0.234 4.234 14 C -0.095 4.095 15 C -0.212 4.212 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.094 4.094 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 6.461 9.967 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.037 3.963 3 H 0.091 0.909 4 C -0.164 4.164 5 C -0.209 4.209 6 C 0.224 3.776 7 O -0.318 6.318 8 C -0.075 4.075 9 N -0.348 5.348 10 C 0.362 3.638 11 O -0.402 6.402 12 C -0.131 4.131 13 C -0.253 4.253 14 C -0.113 4.113 15 C -0.231 4.231 16 C 0.099 3.901 17 C -0.488 4.488 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.406 5.406 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.115 4.115 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.872 6.061 10.132 12.773 hybrid contribution -0.342 -0.411 -0.212 0.575 sum 4.531 5.650 9.921 12.283 Atomic orbital electron populations 1.22214 0.92011 1.04145 1.00874 1.21378 0.96490 0.94830 0.83646 0.90949 1.22092 0.93077 1.02484 0.98749 1.22347 0.97915 1.03089 0.97534 1.25383 0.77635 0.81431 0.93187 1.90425 1.28091 1.23611 1.89677 1.23198 0.81724 1.04224 0.98395 1.47982 1.05247 1.59375 1.22239 1.18928 0.85500 0.76126 0.83200 1.90775 1.15507 1.55528 1.78408 1.19480 0.97101 1.01560 0.94990 1.20667 0.97828 1.06274 1.00568 1.20470 0.98209 0.97460 0.95201 1.21122 0.99445 1.01831 1.00743 1.17584 0.91094 0.91098 0.90337 1.19573 0.91901 1.12935 1.24431 0.90082 1.25969 0.98181 0.97164 0.93329 1.69788 1.09662 1.29275 1.31863 0.86326 0.78185 0.82045 0.80000 1.18738 1.20203 1.18908 1.21542 0.99234 0.96488 0.94187 0.90581 0.94279 0.90674 0.90877 0.89733 0.89365 0.88328 0.83886 0.88675 0.87995 0.88780 0.88580 0.90347 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.59 37.16 0.28 -1.68 16 2 C 0.14 1.79 3.41 -67.42 -0.23 1.56 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.32 5.40 -26.31 -0.14 -1.46 16 5 C -0.17 -1.70 6.14 -27.46 -0.17 -1.86 16 6 C 0.35 4.78 6.87 -28.34 -0.19 4.58 16 7 O -0.45 -7.59 17.90 5.99 0.11 -7.48 16 8 C 0.05 0.68 4.82 -4.42 -0.02 0.66 16 9 N -0.61 -9.83 2.97 -166.91 -0.50 -10.33 16 10 C 0.57 11.91 7.36 -12.31 -0.09 11.82 16 11 O -0.53 -12.12 12.08 5.32 0.06 -12.05 16 12 C -0.13 -2.95 5.43 -105.04 -0.57 -3.52 16 13 C -0.23 -4.80 7.42 -38.92 -0.29 -5.09 16 14 C -0.10 -1.99 10.01 -39.72 -0.40 -2.39 16 15 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 16 C 0.10 2.65 5.57 -106.87 -0.59 2.05 16 17 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 18 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 19 C 0.07 1.82 5.15 -17.35 -0.09 1.73 16 20 N -0.78 -20.51 10.95 55.55 0.61 -19.90 16 21 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.09 -2.46 8.23 -38.44 -0.32 -2.78 16 26 H 0.08 1.30 6.75 -51.93 -0.35 0.95 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.27 6.73 -51.93 -0.35 0.92 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 2.38 4.55 -51.93 -0.24 2.15 16 34 H 0.10 1.06 7.82 -51.93 -0.41 0.65 16 35 H 0.10 1.75 5.32 -52.49 -0.28 1.47 16 36 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 38 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 39 H 0.13 3.64 6.03 -52.48 -0.32 3.33 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -29.68 315.40 -8.40 -38.09 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.87 Total: 7.36 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.54 Total: -14.03 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.11 Total: -30.23 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.17 Total: -19.53 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.68 -8.40 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885097094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.566 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds