Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.53737 * 2 1 4 4 C 1.53593 * 109.60682 * 120.36295 * 2 1 3 5 5 C 1.53225 * 109.35831 * 178.43050 * 4 2 1 6 6 C 1.51329 * 108.64805 * 303.69738 * 5 4 2 7 7 O 1.20767 * 121.01956 * 232.60964 * 6 5 4 8 8 C 1.51493 * 117.95893 * 52.59614 * 6 5 4 9 9 N 1.46874 * 109.50323 * 239.89416 * 2 1 3 10 10 C 1.34770 * 120.71592 * 2.97077 * 9 2 1 11 11 O 1.21553 * 120.00242 * 353.71702 * 10 9 2 12 12 C 1.47889 * 120.00079 * 173.99564 * 10 9 2 13 13 C 1.39917 * 120.02071 * 330.25479 * 12 10 9 14 14 C 1.38334 * 120.35583 * 179.71864 * 13 12 10 15 15 C 1.37756 * 120.41047 * 0.56174 * 14 13 12 16 16 C 1.40754 * 120.04110 * 359.71700 * 15 14 13 17 17 C 1.41428 * 120.18047 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00215 * 25.32383 * 17 16 15 19 19 C 1.39937 * 120.00153 * 205.33346 * 17 16 15 20 20 N 1.30823 * 119.99962 * 16.88973 * 19 17 16 21 21 Si 1.86799 * 119.99949 * 196.89709 * 19 17 16 22 22 H 1.48497 * 109.47339 * 59.99470 * 21 19 17 23 23 H 1.48497 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47044 * 299.99663 * 21 19 17 25 25 C 1.38990 * 120.02603 * 150.53458 * 12 10 9 26 26 H 1.08998 * 109.47383 * 180.10475 * 1 2 3 27 27 H 1.09005 * 109.47323 * 300.10684 * 1 2 3 28 28 H 1.09005 * 109.46992 * 60.10129 * 1 2 3 29 29 H 1.09007 * 109.61665 * 58.40105 * 4 2 1 30 30 H 1.08996 * 109.41121 * 298.33806 * 4 2 1 31 31 H 1.08993 * 109.60866 * 183.94434 * 5 4 2 32 32 H 1.09001 * 109.60631 * 63.44269 * 5 4 2 33 33 H 1.08997 * 109.83122 * 194.30776 * 8 6 5 34 34 H 1.08995 * 109.88331 * 73.40262 * 8 6 5 35 35 H 1.07994 * 119.82616 * 359.97438 * 13 12 10 36 36 H 1.08001 * 119.79669 * 180.25548 * 14 13 12 37 37 H 1.08001 * 119.97718 * 179.74403 * 15 14 13 38 38 H 0.97000 * 119.99725 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.20734 * 359.97204 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0454 -0.7314 1.2484 5 6 3.5772 -0.7623 1.2228 6 6 4.0266 -1.4106 -0.0686 7 8 4.8027 -2.3358 -0.0632 8 6 3.4727 -0.8637 -1.3682 9 7 2.0204 -0.6944 -1.1977 10 6 1.1595 -1.1617 -2.1234 11 8 -0.0378 -1.1131 -1.9194 12 6 1.6717 -1.7394 -3.3847 13 6 2.8813 -1.2856 -3.9221 14 6 3.3698 -1.8251 -5.0985 15 6 2.6658 -2.8068 -5.7606 16 6 1.4443 -3.2718 -5.2383 17 6 0.7188 -4.2792 -5.9158 18 1 1.2339 -4.9715 -6.5654 19 6 -0.6665 -4.3789 -5.7449 20 7 -1.3376 -3.3744 -5.2429 21 14 -1.5574 -5.9465 -6.2333 22 1 -1.0164 -7.0874 -5.4518 23 1 -3.0083 -5.7990 -5.9533 24 1 -1.3557 -6.1994 -7.6826 25 6 0.9491 -2.7292 -4.0403 26 1 -0.3634 -1.0276 0.0019 27 1 -0.3634 0.5155 0.8890 28 1 -0.3633 0.5123 -0.8909 29 1 1.6614 -1.7515 1.2596 30 1 1.7073 -0.2059 2.1415 31 1 3.9456 -1.3406 2.0700 32 1 3.9644 0.2553 1.2753 33 1 3.6705 -1.5651 -2.1787 34 1 3.9332 0.0986 -1.5917 35 1 3.4387 -0.5129 -3.4136 36 1 4.3065 -1.4710 -5.5031 37 1 3.0516 -3.2202 -6.6807 38 1 -2.2978 -3.4437 -5.1241 39 1 0.0129 -3.0797 -3.6314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885097094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -46.245018 kcal Electronic energy + Delta-G solvation = -22948.984494 eV Core-core repulsion = 19628.446156 eV Total energy + Delta-G solvation = -3320.538338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89908 -40.24042 -39.06348 -37.39948 -35.77831 -34.34401 -32.32491 -31.52226 -31.23538 -28.30023 -27.30493 -25.66128 -24.42733 -23.06979 -22.36289 -21.08819 -20.16326 -19.16905 -17.76625 -17.41026 -16.96911 -16.85409 -16.59284 -16.26306 -15.90778 -15.79260 -15.42937 -15.01965 -14.55966 -14.37410 -14.14687 -13.99811 -13.62784 -13.48683 -13.29182 -13.07573 -12.87445 -12.76475 -12.54004 -12.49942 -12.22973 -12.07181 -12.03935 -11.72903 -11.54840 -11.09064 -10.83085 -10.06221 -9.63309 -9.39239 -9.36820 -8.66877 -6.40049 0.42569 0.74667 0.98711 1.34437 1.45762 1.48467 1.92294 2.03914 2.17472 2.71928 2.99109 3.60979 3.64174 3.68026 3.83577 3.96383 4.21032 4.29218 4.41987 4.47496 4.51900 4.56652 4.64295 4.81420 4.87611 4.88627 5.01063 5.01900 5.06200 5.17331 5.26597 5.26771 5.40724 5.49914 5.71324 5.81357 5.92717 6.01356 6.17269 6.28501 6.42021 6.58824 6.86327 6.92297 7.23087 8.29030 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.005066 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.758466 B = 5525.549572 C = 6176.367564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.133 3.867 3 H 0.115 0.885 4 C -0.118 4.118 5 C -0.159 4.159 6 C 0.353 3.647 7 O -0.488 6.488 8 C 0.039 3.961 9 N -0.601 5.601 10 C 0.562 3.438 11 O -0.560 6.560 12 C -0.140 4.140 13 C -0.210 4.210 14 C -0.096 4.096 15 C -0.220 4.220 16 C 0.069 3.931 17 C -0.499 4.499 18 H 0.083 0.917 19 C 0.030 3.970 20 N -0.825 5.825 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.132 4.132 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.633 8.620 11.765 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.032 3.968 3 H 0.133 0.867 4 C -0.156 4.156 5 C -0.196 4.196 6 C 0.229 3.771 7 O -0.362 6.362 8 C -0.083 4.083 9 N -0.336 5.336 10 C 0.354 3.646 11 O -0.440 6.440 12 C -0.143 4.143 13 C -0.229 4.229 14 C -0.114 4.114 15 C -0.240 4.240 16 C 0.066 3.934 17 C -0.529 4.529 18 H 0.101 0.899 19 C -0.185 4.185 20 N -0.450 5.450 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.152 4.152 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.170 8.248 11.954 16.197 hybrid contribution -0.878 -0.921 -0.664 1.435 sum 6.292 7.328 11.290 14.857 Atomic orbital electron populations 1.22034 0.93742 1.01839 1.01113 1.21774 0.95222 0.96856 0.82962 0.86739 1.22065 0.93481 1.01176 0.98919 1.22363 0.96968 1.05145 0.95156 1.25779 0.76408 0.80480 0.94426 1.90431 1.30270 1.25323 1.90177 1.23344 0.80533 1.05906 0.98521 1.47948 1.05608 1.57995 1.22082 1.18736 0.85584 0.76618 0.83698 1.90782 1.17054 1.57048 1.79122 1.19873 0.97685 1.00638 0.96113 1.21199 0.96346 1.05613 0.99759 1.20959 0.99400 0.96167 0.94871 1.21416 0.98758 1.02422 1.01383 1.17939 0.92584 0.92045 0.90804 1.19843 0.92950 1.14128 1.25944 0.89916 1.26842 0.98619 1.00128 0.92891 1.69896 1.09838 1.31414 1.33856 0.85252 0.76922 0.77531 0.80060 1.18560 1.19550 1.17636 1.21347 0.99304 0.99125 0.95466 0.94287 0.90531 0.93741 0.93593 0.85739 0.88378 0.84060 0.86682 0.84083 0.83649 0.84386 0.87514 0.90288 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 7.59 71.98 0.55 -3.10 16 2 C 0.13 2.95 3.41 45.12 0.15 3.10 16 3 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.12 -2.00 5.40 30.87 0.17 -1.83 16 5 C -0.16 -2.34 6.14 30.12 0.18 -2.16 16 6 C 0.35 8.51 6.87 29.55 0.20 8.71 16 7 O -0.49 -15.76 17.90 -1.47 -0.03 -15.79 16 8 C 0.04 0.98 4.82 85.75 0.41 1.40 16 9 N -0.60 -18.18 2.97 -800.25 -2.38 -20.55 16 10 C 0.56 23.99 7.36 86.80 0.64 24.62 16 11 O -0.56 -27.35 12.08 -3.88 -0.05 -27.39 16 12 C -0.14 -6.60 5.43 -20.13 -0.11 -6.71 16 13 C -0.21 -8.28 7.42 22.70 0.17 -8.11 16 14 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 15 C -0.22 -10.46 9.78 22.77 0.22 -10.24 16 16 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 17 C -0.50 -27.58 9.05 23.47 0.21 -27.37 16 18 H 0.08 4.32 7.90 -2.91 -0.02 4.29 16 19 C 0.03 1.59 5.15 85.25 0.44 2.03 16 20 N -0.82 -46.48 10.95 21.82 0.24 -46.24 16 21 Si 0.98 40.03 29.59 68.60 2.03 42.06 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.13 -7.35 8.23 23.01 0.19 -7.16 16 26 H 0.04 1.37 6.75 -2.39 -0.02 1.35 16 27 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.04 1.51 6.73 -2.38 -0.02 1.49 16 29 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 3.58 4.55 -2.39 -0.01 3.57 16 34 H 0.14 2.29 7.82 -2.39 -0.02 2.27 16 35 H 0.15 4.39 5.32 -2.91 -0.02 4.38 16 36 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 39 H 0.10 5.89 6.03 -2.91 -0.02 5.88 16 Total: -1.00 -73.59 315.40 4.42 -69.16 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 1.07 Total: 25.54 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.53 Total: -26.79 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -2.14 Total: -66.80 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.07 Total: -43.18 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -73.59 4.42 -69.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885097094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.919 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds