Wall clock time and date at job start Tue Mar 31 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.54822 * 2 1 4 4 C 1.53000 * 117.51514 * 214.30316 * 2 1 3 5 5 C 1.52999 * 60.00028 * 252.51533 * 4 2 1 6 6 H 1.08998 * 117.52015 * 252.51897 * 5 4 2 7 7 C 1.53004 * 117.49511 * 107.49010 * 5 4 2 8 8 H 1.08999 * 115.55146 * 17.04374 * 7 5 4 9 9 C 1.53000 * 117.49794 * 162.75710 * 7 5 4 10 10 C 1.53004 * 117.49466 * 231.37987 * 7 5 4 11 11 H 1.08996 * 117.50461 * 0.02562 * 10 7 5 12 12 C 1.53001 * 117.49902 * 145.02367 * 10 7 5 13 13 N 1.46498 * 109.47089 * 184.99433 * 12 10 7 14 14 S 1.65602 * 119.99612 * 164.71987 * 13 12 10 15 15 O 1.42109 * 104.27511 * 181.34803 * 14 13 12 16 16 O 1.42098 * 104.28120 * 309.20801 * 14 13 12 17 17 C 1.81394 * 104.44973 * 65.28269 * 14 13 12 18 18 C 1.53003 * 109.47387 * 179.97438 * 17 14 13 19 19 C 1.50707 * 109.47138 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99608 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99869 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00166 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47450 * 59.99845 * 23 21 19 25 25 H 1.48500 * 109.47529 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46855 * 300.00322 * 23 21 19 27 27 H 1.09010 * 109.46690 * 274.32685 * 1 2 3 28 28 H 1.08997 * 109.47368 * 34.32142 * 1 2 3 29 29 H 1.08996 * 109.47557 * 154.32869 * 1 2 3 30 30 H 1.09004 * 117.49895 * 145.02838 * 4 2 1 31 31 H 1.09004 * 117.50168 * 0.02562 * 4 2 1 32 32 H 1.08998 * 117.49572 * 0.02562 * 9 7 5 33 33 H 1.08997 * 117.50056 * 214.97769 * 9 7 5 34 34 H 1.08996 * 109.47377 * 64.99591 * 12 10 7 35 35 H 1.08999 * 109.46886 * 304.99729 * 12 10 7 36 36 H 0.97001 * 120.00384 * 345.00465 * 13 12 10 37 37 H 1.09009 * 109.47044 * 299.99503 * 17 14 13 38 38 H 1.09001 * 109.47747 * 59.99183 * 17 14 13 39 39 H 1.08994 * 109.46789 * 299.99279 * 18 17 14 40 40 H 1.08993 * 109.47045 * 59.99537 * 18 17 14 41 41 H 0.97007 * 119.99442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1712 -0.8746 1.2691 7 6 1.3589 -2.1561 1.4715 8 1 1.0286 -2.9918 0.8546 9 6 1.6472 -2.4376 2.9475 10 6 0.3974 -1.6501 2.5488 11 1 0.3897 -0.5797 2.7541 12 6 -0.9537 -2.3564 2.6781 13 7 -1.7750 -1.6611 3.6721 14 16 -3.4024 -1.9565 3.7542 15 8 -3.8624 -1.0987 4.7897 16 8 -3.8553 -1.7984 2.4166 17 6 -3.5221 -3.6926 4.2658 18 6 -4.9951 -4.0906 4.3793 19 6 -5.0944 -5.5333 4.8038 20 1 -4.1967 -6.1088 4.9750 21 6 -6.3313 -6.1183 4.9734 22 7 -7.4244 -5.4172 4.7654 23 14 -6.4545 -7.9062 5.5002 24 1 -5.7912 -8.0811 6.8173 25 1 -7.8842 -8.2925 5.6103 26 1 -5.7860 -8.7666 4.4912 27 1 -0.3633 0.0775 1.0249 28 1 -0.3634 0.8487 -0.5794 29 1 -0.3634 -0.9262 -0.4452 30 1 3.1720 -0.8750 -1.2678 31 1 1.6119 -1.8584 -1.2684 32 1 2.4618 -1.8849 3.4154 33 1 1.5069 -3.4588 3.3019 34 1 -0.7959 -3.3875 2.9943 35 1 -1.4628 -2.3458 1.7144 36 1 -1.3664 -1.0246 4.2795 37 1 -3.0307 -4.3243 3.5256 38 1 -3.0359 -3.8209 5.2329 39 1 -5.4860 -3.4591 5.1197 40 1 -5.4816 -3.9623 3.4125 41 1 -8.2946 -5.8287 4.8852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885622471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:23 Heat of formation + Delta-G solvation = -44.659357 kcal Electronic energy + Delta-G solvation = -20671.492492 eV Core-core repulsion = 17486.466864 eV Total energy + Delta-G solvation = -3185.025627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.44265 -36.69653 -36.41282 -35.42084 -33.95732 -33.88701 -31.15657 -28.85521 -26.37711 -25.59604 -23.74866 -21.73093 -21.61117 -21.10863 -19.56572 -18.75629 -17.39655 -16.66997 -16.21000 -16.00724 -15.44578 -15.07508 -14.57869 -14.48516 -14.27723 -13.89211 -13.40208 -13.26559 -12.92591 -12.51903 -12.41039 -11.92664 -11.74718 -11.71677 -11.58087 -11.53727 -11.50298 -11.35857 -11.06611 -10.96387 -10.78175 -10.73703 -10.43435 -10.37150 -10.00102 -9.73672 -9.66654 -9.40641 -8.98978 -8.49950 -6.12253 -4.17975 0.80877 3.08779 3.27125 3.31994 3.33676 3.37212 3.69010 4.18705 4.29325 4.38702 4.47378 4.58098 4.64880 4.77656 4.84117 4.96838 5.08031 5.12495 5.22786 5.23119 5.32755 5.54152 5.59430 5.60103 5.64546 5.66427 5.70282 5.72996 5.89343 5.91448 5.93377 5.97937 6.11104 6.21765 6.49334 7.12408 7.30457 7.36947 7.80450 8.17737 8.85213 9.46730 10.98755 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.003380 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.752566 B = 8283.029536 C = 8756.488972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 H 0.100 0.900 4 C -0.174 4.174 5 C -0.124 4.124 6 H 0.104 0.896 7 C -0.114 4.114 8 H 0.109 0.891 9 C -0.170 4.170 10 C -0.150 4.150 11 H 0.114 0.886 12 C 0.145 3.855 13 N -1.126 6.126 14 S 2.594 3.406 15 O -0.968 6.968 16 O -0.967 6.967 17 C -0.590 4.590 18 C 0.028 3.972 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.413 0.587 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.345 7.956 -7.009 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 H 0.118 0.882 4 C -0.211 4.211 5 C -0.142 4.142 6 H 0.122 0.878 7 C -0.133 4.133 8 H 0.127 0.873 9 C -0.207 4.207 10 C -0.169 4.169 11 H 0.132 0.868 12 C 0.018 3.982 13 N -0.883 5.883 14 S 2.691 3.309 15 O -0.958 6.958 16 O -0.957 6.957 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.246 0.754 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.383 8.483 -7.347 22.398 hybrid contribution 0.502 -1.296 0.728 1.569 sum 19.885 7.187 -6.619 22.156 Atomic orbital electron populations 1.21439 0.92241 1.02030 1.02664 1.22388 0.95910 0.94007 1.04319 0.88189 1.23132 1.02446 1.01915 0.93600 1.21821 0.99803 0.99076 0.93468 0.87841 1.21797 1.00635 0.99808 0.91025 0.87321 1.23229 0.99236 1.01437 0.96817 1.22577 0.90271 0.99887 1.04169 0.86848 1.20852 0.90116 0.94815 0.92370 1.55762 1.28541 1.56914 1.47066 1.05514 0.72125 0.78677 0.74593 1.93554 1.78655 1.64441 1.59190 1.93538 1.79052 1.86212 1.36867 1.30449 1.10526 1.20416 1.10948 1.18959 0.84317 0.98927 0.98913 1.20972 0.92547 0.95231 1.47343 0.92108 1.25068 0.95721 0.98486 0.95206 1.69951 0.97791 1.36735 1.48376 0.86526 0.77146 0.84374 0.79192 1.20083 1.21070 1.20082 0.91378 0.92493 0.92240 0.89036 0.88596 0.88734 0.88314 0.91602 0.89919 0.75419 0.86398 0.86105 0.94823 0.94814 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.97 37.16 0.33 -0.83 16 2 C -0.15 -1.19 6.39 -90.62 -0.58 -1.77 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.17 -1.30 9.90 -26.73 -0.26 -1.56 16 5 C -0.12 -0.96 5.87 -90.62 -0.53 -1.49 16 6 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.11 -0.93 4.97 -90.62 -0.45 -1.38 16 8 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.17 -1.33 9.90 -26.73 -0.26 -1.59 16 10 C -0.15 -1.34 3.84 -90.61 -0.35 -1.69 16 11 H 0.11 1.01 7.29 -51.93 -0.38 0.63 16 12 C 0.14 1.58 6.42 -4.04 -0.03 1.56 16 13 N -1.13 -14.14 5.89 -10.61 -0.06 -14.20 16 14 S 2.59 45.70 5.46 -107.50 -0.59 45.11 16 15 O -0.97 -20.03 18.08 -57.54 -1.04 -21.07 16 16 O -0.97 -19.84 17.48 -57.54 -1.01 -20.84 16 17 C -0.59 -11.15 6.02 37.16 0.22 -10.93 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 23 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H 0.07 0.67 5.95 -51.92 -0.31 0.36 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 34 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 35 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 36 H 0.41 4.38 8.62 -34.47 -0.30 4.08 16 37 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 38 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -34.11 351.75 -10.94 -45.06 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.81 Total: 2.58 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -2.46 Total: -32.31 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.67 Total: -39.99 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.05 Total: -41.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 45.70 SS G_CDS: -0.59 Total: 45.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.11 -10.94 -45.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885622471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.396 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds