Wall clock time and date at job start Tue Mar 31 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.54822 * 2 1 4 4 C 1.53000 * 117.51514 * 214.30316 * 2 1 3 5 5 C 1.52999 * 60.00028 * 252.51533 * 4 2 1 6 6 H 1.08998 * 117.52015 * 252.51897 * 5 4 2 7 7 C 1.53004 * 117.49511 * 107.49010 * 5 4 2 8 8 H 1.08999 * 115.55146 * 17.04374 * 7 5 4 9 9 C 1.53000 * 117.49794 * 162.75710 * 7 5 4 10 10 C 1.53004 * 117.49466 * 231.37987 * 7 5 4 11 11 H 1.08996 * 117.50461 * 0.02562 * 10 7 5 12 12 C 1.53001 * 117.49902 * 145.02367 * 10 7 5 13 13 N 1.46498 * 109.47089 * 184.99433 * 12 10 7 14 14 S 1.65602 * 119.99612 * 164.71987 * 13 12 10 15 15 O 1.42109 * 104.27511 * 181.34803 * 14 13 12 16 16 O 1.42098 * 104.28120 * 309.20801 * 14 13 12 17 17 C 1.81394 * 104.44973 * 65.28269 * 14 13 12 18 18 C 1.53003 * 109.47387 * 179.97438 * 17 14 13 19 19 C 1.50707 * 109.47138 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99608 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99869 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00166 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47450 * 59.99845 * 23 21 19 25 25 H 1.48500 * 109.47529 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46855 * 300.00322 * 23 21 19 27 27 H 1.09010 * 109.46690 * 274.32685 * 1 2 3 28 28 H 1.08997 * 109.47368 * 34.32142 * 1 2 3 29 29 H 1.08996 * 109.47557 * 154.32869 * 1 2 3 30 30 H 1.09004 * 117.49895 * 145.02838 * 4 2 1 31 31 H 1.09004 * 117.50168 * 0.02562 * 4 2 1 32 32 H 1.08998 * 117.49572 * 0.02562 * 9 7 5 33 33 H 1.08997 * 117.50056 * 214.97769 * 9 7 5 34 34 H 1.08996 * 109.47377 * 64.99591 * 12 10 7 35 35 H 1.08999 * 109.46886 * 304.99729 * 12 10 7 36 36 H 0.97001 * 120.00384 * 345.00465 * 13 12 10 37 37 H 1.09009 * 109.47044 * 299.99503 * 17 14 13 38 38 H 1.09001 * 109.47747 * 59.99183 * 17 14 13 39 39 H 1.08994 * 109.46789 * 299.99279 * 18 17 14 40 40 H 1.08993 * 109.47045 * 59.99537 * 18 17 14 41 41 H 0.97007 * 119.99442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1712 -0.8746 1.2691 7 6 1.3589 -2.1561 1.4715 8 1 1.0286 -2.9918 0.8546 9 6 1.6472 -2.4376 2.9475 10 6 0.3974 -1.6501 2.5488 11 1 0.3897 -0.5797 2.7541 12 6 -0.9537 -2.3564 2.6781 13 7 -1.7750 -1.6611 3.6721 14 16 -3.4024 -1.9565 3.7542 15 8 -3.8624 -1.0987 4.7897 16 8 -3.8553 -1.7984 2.4166 17 6 -3.5221 -3.6926 4.2658 18 6 -4.9951 -4.0906 4.3793 19 6 -5.0944 -5.5333 4.8038 20 1 -4.1967 -6.1088 4.9750 21 6 -6.3313 -6.1183 4.9734 22 7 -7.4244 -5.4172 4.7654 23 14 -6.4545 -7.9062 5.5002 24 1 -5.7912 -8.0811 6.8173 25 1 -7.8842 -8.2925 5.6103 26 1 -5.7860 -8.7666 4.4912 27 1 -0.3633 0.0775 1.0249 28 1 -0.3634 0.8487 -0.5794 29 1 -0.3634 -0.9262 -0.4452 30 1 3.1720 -0.8750 -1.2678 31 1 1.6119 -1.8584 -1.2684 32 1 2.4618 -1.8849 3.4154 33 1 1.5069 -3.4588 3.3019 34 1 -0.7959 -3.3875 2.9943 35 1 -1.4628 -2.3458 1.7144 36 1 -1.3664 -1.0246 4.2795 37 1 -3.0307 -4.3243 3.5256 38 1 -3.0359 -3.8209 5.2329 39 1 -5.4860 -3.4591 5.1197 40 1 -5.4816 -3.9623 3.4125 41 1 -8.2946 -5.8287 4.8852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885622471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:22 Heat of formation + Delta-G solvation = -67.514698 kcal Electronic energy + Delta-G solvation = -20672.483574 eV Core-core repulsion = 17486.466864 eV Total energy + Delta-G solvation = -3186.016709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09214 -38.15543 -37.28696 -36.98312 -35.88563 -34.89958 -33.11599 -29.55879 -27.58516 -27.27084 -24.35396 -23.60180 -22.21898 -21.90831 -20.46143 -19.90585 -19.03437 -18.22370 -17.51434 -17.02705 -16.62251 -16.52401 -16.25922 -15.36758 -15.31079 -14.91689 -14.75802 -14.43200 -14.04635 -13.73337 -13.58057 -13.25348 -13.18215 -13.09066 -13.06465 -12.89814 -12.78487 -12.31924 -12.25279 -12.19935 -12.15715 -12.05027 -11.75580 -11.47751 -11.43373 -11.15329 -10.64373 -10.63214 -10.34602 -10.10243 -8.25480 -6.39711 -0.66029 1.41281 1.44773 1.52938 1.86092 2.38572 2.68311 2.83275 3.06698 3.07918 3.28247 3.59219 3.84489 3.91174 4.00081 4.03969 4.14626 4.19125 4.26218 4.41662 4.48599 4.52607 4.62615 4.76780 4.79990 4.95128 4.98445 4.99991 5.02694 5.04258 5.24796 5.28071 5.29245 5.31182 5.34785 5.42617 5.50960 5.68815 6.06683 6.17005 6.74035 7.30548 8.86625 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.003380 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.752566 B = 8283.029536 C = 8756.488972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.155 4.155 3 H 0.108 0.892 4 C -0.172 4.172 5 C -0.123 4.123 6 H 0.114 0.886 7 C -0.115 4.115 8 H 0.107 0.893 9 C -0.158 4.158 10 C -0.156 4.156 11 H 0.114 0.886 12 C 0.135 3.865 13 N -1.105 6.105 14 S 2.621 3.379 15 O -1.001 7.001 16 O -0.998 6.998 17 C -0.588 4.588 18 C 0.019 3.981 19 C -0.541 4.541 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.262 1.262 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.425 0.575 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.979 6.887 -6.749 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 H 0.126 0.874 4 C -0.209 4.209 5 C -0.141 4.141 6 H 0.132 0.868 7 C -0.134 4.134 8 H 0.125 0.875 9 C -0.195 4.195 10 C -0.176 4.176 11 H 0.132 0.868 12 C 0.010 3.990 13 N -0.867 5.867 14 S 2.718 3.282 15 O -0.991 6.991 16 O -0.988 6.988 17 C -0.720 4.720 18 C -0.020 4.020 19 C -0.580 4.580 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.187 1.187 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.262 0.738 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.033 7.414 -7.079 24.301 hybrid contribution -0.260 -0.904 0.598 1.115 sum 21.772 6.510 -6.481 23.631 Atomic orbital electron populations 1.21428 0.93399 1.01637 1.02053 1.22386 0.95044 0.94696 1.05176 0.87406 1.23188 1.02760 1.01344 0.93592 1.21880 0.99939 0.98589 0.93657 0.86816 1.21847 1.00268 0.99824 0.91422 0.87458 1.23310 0.98412 1.01591 0.96209 1.22453 0.89580 0.99907 1.05629 0.86805 1.21109 0.90677 0.95903 0.91347 1.55232 1.26647 1.57098 1.47676 1.04386 0.73071 0.77548 0.73199 1.93503 1.80263 1.65175 1.60148 1.93498 1.80548 1.86344 1.38360 1.30341 1.06323 1.22146 1.13225 1.18824 0.88383 0.98214 0.96541 1.21511 0.93285 0.96347 1.46813 0.90521 1.26129 0.95367 1.03617 0.95172 1.70105 0.98471 1.39036 1.49828 0.85360 0.77211 0.78283 0.79373 1.18768 1.21046 1.18689 0.92179 0.92442 0.93044 0.87806 0.88985 0.87620 0.87716 0.89771 0.90962 0.73830 0.83956 0.83858 0.97585 0.97481 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.97 71.98 0.65 -1.64 16 2 C -0.15 -2.26 6.39 -10.79 -0.07 -2.33 16 3 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.17 -2.26 9.90 30.59 0.30 -1.95 16 5 C -0.12 -1.64 5.87 -10.79 -0.06 -1.70 16 6 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 7 C -0.11 -1.64 4.97 -10.79 -0.05 -1.69 16 8 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 9 C -0.16 -2.00 9.90 30.60 0.30 -1.70 16 10 C -0.16 -2.47 3.84 -10.79 -0.04 -2.51 16 11 H 0.11 1.81 7.29 -2.39 -0.02 1.80 16 12 C 0.14 2.71 6.42 86.38 0.55 3.26 16 13 N -1.10 -26.07 5.89 -187.50 -1.10 -27.18 16 14 S 2.62 91.96 5.46 -56.49 -0.31 91.65 16 15 O -1.00 -41.71 18.08 -127.65 -2.31 -44.02 16 16 O -1.00 -41.46 17.48 -127.65 -2.23 -43.69 16 17 C -0.59 -21.78 6.02 71.98 0.43 -21.34 16 18 C 0.02 1.00 4.98 29.85 0.15 1.15 16 19 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 20 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 21 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 22 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 23 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 H 0.06 1.15 5.95 -2.38 -0.01 1.13 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.97 7.90 -2.39 -0.02 0.95 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.28 8.05 -2.38 -0.02 1.26 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.23 8.03 -2.39 -0.02 1.21 16 34 H 0.08 1.40 7.87 -2.39 -0.02 1.38 16 35 H 0.07 1.62 7.68 -2.39 -0.02 1.60 16 36 H 0.43 8.23 8.62 -96.74 -0.83 7.40 16 37 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 38 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -74.26 351.75 -0.61 -74.87 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.17 Total: 19.87 kcal Atomic # 6 Polarization: -62.73 SS G_CDS: 2.86 Total: -59.87 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -0.82 Total: -83.94 kcal Atomic # 8 Polarization: -83.17 SS G_CDS: -4.54 Total: -87.71 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 91.96 SS G_CDS: -0.31 Total: 91.65 kcal Total: -74.26 -0.61 -74.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885622471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.360 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds