Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47278 * 120.00213 * 2 1 3 5 5 H 1.08000 * 120.00620 * 120.00129 * 4 2 1 6 6 C 1.37882 * 119.99610 * 300.00191 * 4 2 1 7 7 N 1.31514 * 120.00307 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99695 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46887 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47301 * 299.99717 * 8 6 4 11 11 H 1.48501 * 109.47317 * 60.00222 * 8 6 4 12 12 C 1.50709 * 109.47430 * 239.99809 * 2 1 3 13 13 O 1.21287 * 120.00051 * 262.80331 * 12 2 1 14 14 N 1.34773 * 119.99478 * 82.79450 * 12 2 1 15 15 C 1.47330 * 120.82197 * 2.79447 * 14 12 2 16 16 C 1.53159 * 107.10536 * 219.11506 * 15 14 12 17 17 C 1.52637 * 117.65901 * 93.15266 * 16 15 14 18 18 C 1.52626 * 117.83099 * 162.17000 * 16 15 14 19 19 O 1.42897 * 114.31673 * 307.80061 * 16 15 14 20 20 C 1.36178 * 116.87838 * 42.19154 * 19 16 15 21 21 C 1.38770 * 119.03500 * 165.33916 * 20 19 16 22 22 C 1.38166 * 120.13668 * 179.14504 * 21 20 19 23 23 C 1.38282 * 120.16513 * 359.97438 * 22 21 20 24 24 C 1.38142 * 120.08337 * 0.17819 * 23 22 21 25 25 C 1.38841 * 120.05002 * 359.96149 * 24 23 22 26 26 H 1.09012 * 109.47201 * 186.47445 * 1 2 3 27 27 H 1.08991 * 109.47453 * 306.47239 * 1 2 3 28 28 H 1.09001 * 109.46893 * 66.48026 * 1 2 3 29 29 H 0.96996 * 119.99911 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.95855 * 338.55961 * 15 14 12 31 31 H 1.08997 * 109.96685 * 99.85551 * 15 14 12 32 32 H 1.09004 * 117.50850 * 215.35100 * 17 16 15 33 33 H 1.09005 * 117.50549 * 0.42272 * 17 16 15 34 34 H 1.09003 * 117.50281 * 359.85516 * 18 16 15 35 35 H 1.08992 * 117.51080 * 144.92532 * 18 16 15 36 36 H 1.08002 * 119.93434 * 359.10263 * 21 20 19 37 37 H 1.07998 * 119.91889 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.95660 * 180.19602 * 23 22 21 39 39 H 1.08008 * 119.97410 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8268 -0.4200 5.2204 10 1 1.8257 -2.5203 4.0077 11 1 3.8063 -1.1209 4.0082 12 6 2.0324 -0.7105 -1.2305 13 8 2.3586 -1.8769 -1.1666 14 7 2.1190 -0.0497 -2.4019 15 6 1.7856 1.3829 -2.4869 16 6 1.0435 1.5950 -3.8098 17 6 -0.4812 1.5290 -3.7855 18 6 0.2260 2.8737 -3.9712 19 8 1.7240 1.0789 -4.9555 20 6 2.3106 -0.1431 -4.8245 21 6 2.7114 -0.8236 -5.9655 22 6 3.3248 -2.0570 -5.8581 23 6 3.5426 -2.6186 -4.6134 24 6 3.1440 -1.9496 -3.4724 25 6 2.5244 -0.7112 -3.5733 26 1 -0.3634 -1.0212 0.1159 27 1 -0.3634 0.6108 0.8263 28 1 -0.3633 0.4101 -0.9423 29 1 0.7088 1.1613 3.4844 30 1 1.1451 1.6661 -1.6516 31 1 2.6982 1.9787 -2.4760 32 1 -0.9805 1.0986 -4.6536 33 1 -0.9617 1.3412 -2.8252 34 1 0.2106 3.5705 -3.1331 35 1 0.1919 3.3279 -4.9613 36 1 2.5429 -0.3886 -6.9396 37 1 3.6357 -2.5833 -6.7484 38 1 4.0253 -3.5815 -4.5332 39 1 3.3146 -2.3901 -2.5012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890618534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = 2.465731 kcal Electronic energy + Delta-G solvation = -23299.194487 eV Core-core repulsion = 19980.768406 eV Total energy + Delta-G solvation = -3318.426081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09882 -38.81311 -37.93070 -35.43174 -34.66818 -33.98990 -31.02624 -29.89357 -29.10480 -26.93940 -25.32529 -23.87624 -22.85648 -22.30802 -22.17603 -19.81611 -18.85001 -18.05132 -16.80331 -16.29867 -15.98671 -15.69152 -15.20993 -14.99183 -14.76837 -14.26292 -14.04777 -13.80197 -13.46055 -13.18689 -13.02329 -12.43422 -12.22419 -11.86341 -11.73307 -11.58409 -11.48842 -11.17986 -11.02003 -10.81322 -10.77256 -10.69657 -10.42450 -10.10184 -10.01807 -9.71383 -9.14584 -8.62193 -8.39605 -8.19281 -7.45537 -6.15716 -4.19379 1.55139 1.63775 2.97161 3.08399 3.29509 3.32728 3.34626 3.40580 3.78080 4.10144 4.28732 4.36797 4.71152 4.82631 4.87574 5.18171 5.20927 5.22281 5.42143 5.48911 5.54873 5.62043 5.65183 5.74380 5.78498 5.82378 5.98515 6.11799 6.43503 6.48435 6.55644 6.65126 6.76497 6.78718 6.87170 7.15444 7.27078 7.57533 7.59448 7.73462 7.89800 8.14971 8.83697 8.89656 9.46053 10.92292 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.005671 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.398731 B = 4935.989037 C = 6138.879776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.035 3.965 3 H 0.050 0.950 4 C -0.506 4.506 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.903 3.097 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.516 6.516 14 N -0.564 5.564 15 C 0.120 3.880 16 C 0.014 3.986 17 C -0.183 4.183 18 C -0.137 4.137 19 O -0.277 6.277 20 C 0.082 3.918 21 C -0.133 4.133 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.127 4.127 25 C 0.098 3.902 26 H 0.039 0.961 27 H 0.094 0.906 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 3.019 -14.036 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.014 3.986 3 H 0.068 0.932 4 C -0.544 4.544 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.391 6.391 14 N -0.289 5.289 15 C -0.003 4.003 16 C -0.026 4.026 17 C -0.220 4.220 18 C -0.175 4.175 19 O -0.191 6.191 20 C 0.035 3.965 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.147 4.147 25 C 0.003 3.997 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.423 2.653 -13.890 14.147 hybrid contribution 0.249 -0.359 0.782 0.895 sum -0.174 2.294 -13.108 13.308 Atomic orbital electron populations 1.21766 0.95755 1.01584 0.99691 1.18929 0.94449 0.96687 0.88517 0.93217 1.20991 1.31815 1.12806 0.88829 0.91052 1.24919 0.94876 0.94965 0.99114 1.69849 1.36647 1.22837 1.23944 0.86469 0.79268 0.79807 0.81429 1.21235 1.20051 1.20135 1.22372 0.75066 0.87086 0.83452 1.90301 1.47405 1.17502 1.83857 1.46200 1.65327 1.09995 1.07413 1.21953 1.00804 0.81466 0.96079 1.22130 0.90958 1.02832 0.86668 1.23595 0.93804 0.99959 1.04628 1.23215 0.99283 0.90462 1.04501 1.86080 1.66901 1.30729 1.35342 1.18620 0.98939 0.86623 0.92313 1.20250 1.03596 0.95309 0.96046 1.20825 1.00476 0.94919 0.97728 1.21063 1.01594 1.00350 0.92060 1.22361 0.96366 0.93554 1.02387 1.18159 1.00839 0.95324 0.85392 0.94185 0.88721 0.96999 0.92690 0.86195 0.89772 0.87912 0.87190 0.86677 0.87510 0.85497 0.85892 0.85926 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.56 37.16 0.32 -2.58 16 2 C 0.04 0.84 1.78 -92.92 -0.17 0.68 16 3 H 0.05 1.19 6.81 -51.93 -0.35 0.83 16 4 C -0.51 -13.78 8.34 -34.44 -0.29 -14.07 16 5 H 0.07 2.04 6.98 -52.49 -0.37 1.67 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.95 11.40 55.43 0.63 -23.32 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.53 12.01 6.75 -10.98 -0.07 11.94 16 13 O -0.52 -12.90 12.38 5.55 0.07 -12.84 16 14 N -0.56 -11.02 3.02 -112.51 -0.34 -11.36 16 15 C 0.12 1.92 5.79 -3.51 -0.02 1.90 16 16 C 0.01 0.20 2.72 -90.92 -0.25 -0.05 16 17 C -0.18 -2.28 10.19 -26.89 -0.27 -2.56 16 18 C -0.14 -1.46 10.23 -26.89 -0.27 -1.73 16 19 O -0.28 -4.43 10.39 -20.31 -0.21 -4.64 16 20 C 0.08 1.39 6.56 -39.08 -0.26 1.13 16 21 C -0.13 -1.93 9.95 -39.41 -0.39 -2.32 16 22 C -0.12 -1.62 10.04 -39.59 -0.40 -2.02 16 23 C -0.13 -2.00 10.04 -39.60 -0.40 -2.40 16 24 C -0.13 -2.37 8.94 -39.39 -0.35 -2.73 16 25 C 0.10 1.86 6.33 -83.35 -0.53 1.33 16 26 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.09 2.26 6.27 -51.93 -0.33 1.93 16 28 H 0.01 0.21 6.43 -51.93 -0.33 -0.12 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.12 1.89 5.14 -51.93 -0.27 1.62 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.11 1.39 7.33 -51.93 -0.38 1.01 16 34 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.18 3.67 4.89 -54.01 -0.26 3.40 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -29.89 316.60 -8.35 -38.24 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.81 Total: 4.94 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.44 Total: -11.89 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.29 Total: -34.68 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.14 Total: -17.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.89 -8.35 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890618534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.709 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds