Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47278 * 120.00213 * 2 1 3 5 5 H 1.08000 * 120.00620 * 120.00129 * 4 2 1 6 6 C 1.37882 * 119.99610 * 300.00191 * 4 2 1 7 7 N 1.31514 * 120.00307 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99695 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46887 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47301 * 299.99717 * 8 6 4 11 11 H 1.48501 * 109.47317 * 60.00222 * 8 6 4 12 12 C 1.50709 * 109.47430 * 239.99809 * 2 1 3 13 13 O 1.21287 * 120.00051 * 262.80331 * 12 2 1 14 14 N 1.34773 * 119.99478 * 82.79450 * 12 2 1 15 15 C 1.47330 * 120.82197 * 2.79447 * 14 12 2 16 16 C 1.53159 * 107.10536 * 219.11506 * 15 14 12 17 17 C 1.52637 * 117.65901 * 93.15266 * 16 15 14 18 18 C 1.52626 * 117.83099 * 162.17000 * 16 15 14 19 19 O 1.42897 * 114.31673 * 307.80061 * 16 15 14 20 20 C 1.36178 * 116.87838 * 42.19154 * 19 16 15 21 21 C 1.38770 * 119.03500 * 165.33916 * 20 19 16 22 22 C 1.38166 * 120.13668 * 179.14504 * 21 20 19 23 23 C 1.38282 * 120.16513 * 359.97438 * 22 21 20 24 24 C 1.38142 * 120.08337 * 0.17819 * 23 22 21 25 25 C 1.38841 * 120.05002 * 359.96149 * 24 23 22 26 26 H 1.09012 * 109.47201 * 186.47445 * 1 2 3 27 27 H 1.08991 * 109.47453 * 306.47239 * 1 2 3 28 28 H 1.09001 * 109.46893 * 66.48026 * 1 2 3 29 29 H 0.96996 * 119.99911 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.95855 * 338.55961 * 15 14 12 31 31 H 1.08997 * 109.96685 * 99.85551 * 15 14 12 32 32 H 1.09004 * 117.50850 * 215.35100 * 17 16 15 33 33 H 1.09005 * 117.50549 * 0.42272 * 17 16 15 34 34 H 1.09003 * 117.50281 * 359.85516 * 18 16 15 35 35 H 1.08992 * 117.51080 * 144.92532 * 18 16 15 36 36 H 1.08002 * 119.93434 * 359.10263 * 21 20 19 37 37 H 1.07998 * 119.91889 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.95660 * 180.19602 * 23 22 21 39 39 H 1.08008 * 119.97410 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8268 -0.4200 5.2204 10 1 1.8257 -2.5203 4.0077 11 1 3.8063 -1.1209 4.0082 12 6 2.0324 -0.7105 -1.2305 13 8 2.3586 -1.8769 -1.1666 14 7 2.1190 -0.0497 -2.4019 15 6 1.7856 1.3829 -2.4869 16 6 1.0435 1.5950 -3.8098 17 6 -0.4812 1.5290 -3.7855 18 6 0.2260 2.8737 -3.9712 19 8 1.7240 1.0789 -4.9555 20 6 2.3106 -0.1431 -4.8245 21 6 2.7114 -0.8236 -5.9655 22 6 3.3248 -2.0570 -5.8581 23 6 3.5426 -2.6186 -4.6134 24 6 3.1440 -1.9496 -3.4724 25 6 2.5244 -0.7112 -3.5733 26 1 -0.3634 -1.0212 0.1159 27 1 -0.3634 0.6108 0.8263 28 1 -0.3633 0.4101 -0.9423 29 1 0.7088 1.1613 3.4844 30 1 1.1451 1.6661 -1.6516 31 1 2.6982 1.9787 -2.4760 32 1 -0.9805 1.0986 -4.6536 33 1 -0.9617 1.3412 -2.8252 34 1 0.2106 3.5705 -3.1331 35 1 0.1919 3.3279 -4.9613 36 1 2.5429 -0.3886 -6.9396 37 1 3.6357 -2.5833 -6.7484 38 1 4.0253 -3.5815 -4.5332 39 1 3.3146 -2.3901 -2.5012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890618534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = -14.269784 kcal Electronic energy + Delta-G solvation = -23299.920194 eV Core-core repulsion = 19980.768406 eV Total energy + Delta-G solvation = -3319.151788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.43589 -40.32159 -39.11246 -36.69478 -36.00860 -35.93211 -32.84650 -31.23511 -30.38930 -28.29551 -27.33988 -25.36721 -23.97575 -23.72979 -23.31715 -21.24045 -20.24391 -19.33493 -18.52390 -17.87796 -17.56332 -17.04916 -16.66600 -16.30922 -16.27693 -15.65968 -15.41250 -15.06425 -14.89390 -14.65323 -14.56821 -14.04562 -13.53171 -13.43765 -13.08004 -12.93921 -12.80886 -12.76042 -12.58877 -12.44583 -12.36676 -12.26373 -12.04967 -11.80756 -11.23085 -11.13518 -10.92583 -10.60387 -10.12379 -9.46450 -8.79788 -8.20990 -6.31221 0.27507 0.39271 1.40359 1.41446 1.49015 1.63762 1.69353 1.95432 2.40956 2.70421 2.89030 3.09775 3.16056 3.56175 3.66239 3.80727 3.96361 4.14794 4.19947 4.28795 4.39842 4.44872 4.51450 4.55538 4.62208 4.65867 4.79328 4.88560 4.91992 4.97609 5.12837 5.16389 5.29675 5.38412 5.55958 5.59740 5.65998 5.81117 5.89500 6.04706 6.27048 6.38168 6.72646 7.16479 7.36903 8.85384 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.005671 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.398731 B = 4935.989037 C = 6138.879776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.036 3.964 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.905 5.905 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.522 3.478 13 O -0.552 6.552 14 N -0.562 5.562 15 C 0.114 3.886 16 C -0.015 4.015 17 C -0.186 4.186 18 C -0.102 4.102 19 O -0.278 6.278 20 C 0.075 3.925 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.133 4.133 24 C -0.155 4.155 25 C 0.063 3.937 26 H 0.020 0.980 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.268 0.732 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 4.009 -16.315 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.015 3.985 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.316 3.684 13 O -0.430 6.430 14 N -0.286 5.286 15 C -0.008 4.008 16 C -0.055 4.055 17 C -0.223 4.223 18 C -0.139 4.139 19 O -0.192 6.192 20 C 0.028 3.972 21 C -0.149 4.149 22 C -0.120 4.120 23 C -0.152 4.152 24 C -0.175 4.175 25 C -0.032 4.032 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.718 3.682 -16.203 16.632 hybrid contribution 0.367 -0.668 1.376 1.573 sum -0.351 3.015 -14.827 15.134 Atomic orbital electron populations 1.21561 0.94675 1.00216 1.00817 1.18821 0.95275 0.96118 0.88324 0.93435 1.21129 1.32504 1.12746 0.90891 0.93598 1.25520 0.94959 0.95629 1.01178 1.69908 1.36602 1.23159 1.24679 0.85656 0.78715 0.78681 0.78870 1.19683 1.20420 1.20078 1.22073 0.75253 0.86721 0.84370 1.90306 1.49084 1.18836 1.84764 1.46033 1.64602 1.11154 1.06838 1.22142 1.01481 0.79586 0.97559 1.22320 0.91539 1.06272 0.85324 1.23644 0.92241 1.01700 1.04694 1.23422 0.94821 0.89286 1.06405 1.86072 1.67003 1.30227 1.35851 1.18909 0.99062 0.87139 0.92104 1.20737 1.02310 0.95362 0.96484 1.21309 0.98071 0.94318 0.98307 1.21340 1.01086 1.01013 0.91762 1.22201 0.98419 0.94467 1.02428 1.18391 1.02861 0.96052 0.85854 0.96082 0.90094 0.93755 0.92295 0.86276 0.89213 0.87371 0.87682 0.84698 0.85484 0.82406 0.81471 0.83747 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.24 8.56 71.98 0.62 -4.63 16 2 C 0.04 1.78 1.78 -12.29 -0.02 1.75 16 3 H 0.05 2.35 6.81 -2.39 -0.02 2.34 16 4 C -0.53 -30.37 8.34 25.60 0.21 -30.16 16 5 H 0.05 2.79 6.98 -2.91 -0.02 2.77 16 6 C 0.03 1.49 5.30 84.66 0.45 1.94 16 7 N -0.91 -48.85 11.40 21.45 0.24 -48.61 16 8 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.52 25.13 6.75 87.66 0.59 25.72 16 13 O -0.55 -29.62 12.38 -3.05 -0.04 -29.66 16 14 N -0.56 -22.68 3.02 -628.27 -1.90 -24.58 16 15 C 0.11 3.66 5.79 86.27 0.50 4.16 16 16 C -0.02 -0.41 2.72 -10.99 -0.03 -0.44 16 17 C -0.19 -4.26 10.19 30.49 0.31 -3.95 16 18 C -0.10 -1.85 10.23 30.49 0.31 -1.53 16 19 O -0.28 -8.36 10.39 -95.58 -0.99 -9.35 16 20 C 0.07 2.43 6.56 22.60 0.15 2.58 16 21 C -0.13 -3.36 9.95 22.38 0.22 -3.14 16 22 C -0.10 -2.38 10.04 22.26 0.22 -2.16 16 23 C -0.13 -3.89 10.04 22.26 0.22 -3.67 16 24 C -0.16 -6.00 8.94 22.39 0.20 -5.80 16 25 C 0.06 2.41 6.33 38.09 0.24 2.66 16 26 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.08 3.92 6.27 -2.39 -0.02 3.90 16 28 H 0.04 1.68 6.43 -2.39 -0.02 1.66 16 29 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.12 3.75 5.14 -2.39 -0.01 3.74 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.10 2.50 7.33 -2.38 -0.02 2.48 16 34 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.14 6.47 4.89 -27.14 -0.13 6.33 16 Total: -1.00 -67.74 316.60 4.49 -63.25 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.95 Total: 19.67 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.20 Total: -16.67 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.65 Total: -73.18 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.03 Total: -39.01 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.74 4.49 -63.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890618534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.980 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds