Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47140 * 2 1 4 4 C 1.35726 * 119.99949 * 264.12744 * 3 2 1 5 5 H 1.07993 * 120.00240 * 148.23260 * 4 3 2 6 6 C 1.39966 * 119.99786 * 328.22774 * 4 3 2 7 7 N 1.30789 * 119.99829 * 152.45420 * 6 4 3 8 8 Si 1.86797 * 120.00125 * 332.45053 * 6 4 3 9 9 H 1.48496 * 109.47216 * 91.63911 * 8 6 4 10 10 H 1.48501 * 109.47154 * 211.63877 * 8 6 4 11 11 H 1.48499 * 109.47267 * 331.63849 * 8 6 4 12 12 C 1.34770 * 120.00047 * 84.12649 * 3 2 1 13 13 O 1.21727 * 120.00212 * 179.97438 * 12 3 2 14 14 C 1.46825 * 119.99910 * 0.02562 * 12 3 2 15 15 C 1.35126 * 119.99597 * 189.18317 * 14 12 3 16 16 C 1.46828 * 120.00428 * 30.25647 * 15 14 12 17 17 O 1.21675 * 119.99743 * 4.60036 * 16 15 14 18 18 C 1.47756 * 120.00340 * 184.60955 * 16 15 14 19 19 C 1.39712 * 120.15890 * 180.02562 * 18 16 15 20 20 C 1.37912 * 119.84321 * 179.97438 * 19 18 16 21 21 C 1.38407 * 120.15654 * 0.25146 * 20 19 18 22 22 C 1.50693 * 119.84544 * 179.74690 * 21 20 19 23 23 C 1.38411 * 120.31000 * 359.48772 * 21 20 19 24 24 C 1.37901 * 120.15832 * 0.51281 * 23 21 20 25 25 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46587 * 300.00249 * 1 2 3 27 27 H 1.09002 * 109.47014 * 59.99772 * 1 2 3 28 28 H 1.09005 * 109.47070 * 240.00298 * 2 1 3 29 29 H 1.08996 * 109.47675 * 120.00007 * 2 1 3 30 30 H 0.97002 * 120.00205 * 179.97438 * 7 6 4 31 31 H 1.07994 * 119.99797 * 9.17982 * 14 12 3 32 32 H 1.07997 * 119.99340 * 210.25658 * 15 14 12 33 33 H 1.07996 * 120.07779 * 359.97438 * 19 18 16 34 34 H 1.07998 * 119.92160 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.47187 * 89.99657 * 22 21 20 36 36 H 1.09004 * 109.47419 * 209.99859 * 22 21 20 37 37 H 1.09002 * 109.47192 * 329.99606 * 22 21 20 38 38 H 1.08006 * 119.92181 * 180.23702 * 23 21 20 39 39 H 1.08002 * 120.07907 * 179.76234 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3579 1.9810 -1.1693 5 1 2.2225 3.0456 -1.2894 6 6 2.8838 1.2195 -2.2194 7 7 2.7179 1.6094 -3.4567 8 14 3.8228 -0.3533 -1.8536 9 1 2.8844 -1.5041 -1.8652 10 1 4.8689 -0.5572 -2.8877 11 1 4.4616 -0.2490 -0.5171 12 6 2.1304 2.0564 1.1610 13 8 2.5366 3.2039 1.1611 14 6 1.7635 1.4074 2.4259 15 6 1.6970 2.1337 3.5634 16 6 1.3288 3.5540 3.5073 17 8 1.0023 4.0563 2.4483 18 6 1.3549 4.3732 4.7366 19 6 1.0046 5.7248 4.6870 20 6 1.0308 6.4833 5.8385 21 6 1.4079 5.9098 7.0404 22 6 1.4395 6.7465 8.2933 23 6 1.7510 4.5701 7.0980 24 6 1.7294 3.7997 5.9544 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.0826 1.0819 -4.1845 31 1 1.5467 0.3497 2.4471 32 1 1.9148 1.6695 4.5139 33 1 0.7141 6.1746 3.7491 34 1 0.7606 7.5283 5.8015 35 1 0.4677 6.7014 8.7849 36 1 2.2056 6.3630 8.9672 37 1 1.6680 7.7803 8.0342 38 1 2.0407 4.1281 8.0399 39 1 2.0011 2.7554 6.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900361895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = 2.707539 kcal Electronic energy + Delta-G solvation = -21981.223815 eV Core-core repulsion = 18662.808220 eV Total energy + Delta-G solvation = -3318.415596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81390 -38.86448 -37.69814 -35.06870 -32.99869 -32.63591 -32.01514 -30.89586 -29.78508 -27.83566 -25.82341 -23.68435 -22.96887 -22.58366 -21.52064 -19.86585 -17.78162 -17.34301 -16.90685 -16.07915 -15.78879 -15.29303 -15.02474 -14.26164 -14.13453 -14.09181 -13.79655 -13.57437 -13.54503 -13.28578 -13.01478 -12.61710 -12.46799 -12.35339 -12.16706 -12.02339 -11.80386 -11.59414 -11.52024 -11.04926 -10.93484 -10.78915 -10.17399 -9.90168 -9.38634 -9.16794 -8.97930 -8.72607 -8.61413 -8.14100 -7.82052 -6.61209 -3.87633 0.67967 1.37819 1.41752 2.93697 3.14077 3.19261 3.24803 4.00278 4.03965 4.26825 4.45920 4.49041 4.72858 4.74933 4.93994 4.97790 5.14033 5.35951 5.37427 5.38183 5.50805 5.56311 5.61867 5.66049 5.80795 5.88865 5.90748 5.97773 6.01377 6.21150 6.32738 6.39132 6.43931 6.48140 6.51802 6.74499 6.78611 6.94062 7.37969 8.24618 8.26303 8.45104 8.95037 9.25796 9.90494 10.49836 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.034576 B = 0.003538 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.607292 B = 7911.376421 C = 8131.401268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 N -0.435 5.435 4 C -0.303 4.303 5 H 0.112 0.888 6 C 0.060 3.940 7 N -0.833 5.833 8 Si 0.873 3.127 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.454 3.546 13 O -0.546 6.546 14 C -0.097 4.097 15 C -0.210 4.210 16 C 0.398 3.602 17 O -0.400 6.400 18 C -0.145 4.145 19 C -0.065 4.065 20 C -0.133 4.133 21 C -0.073 4.073 22 C -0.116 4.116 23 C -0.135 4.135 24 C -0.078 4.078 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 -0.529 19.488 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.048 4.048 3 N -0.154 5.154 4 C -0.430 4.430 5 H 0.130 0.870 6 C -0.150 4.150 7 N -0.467 5.467 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 C 0.246 3.754 13 O -0.429 6.429 14 C -0.120 4.120 15 C -0.232 4.232 16 C 0.274 3.726 17 O -0.273 6.273 18 C -0.146 4.146 19 C -0.083 4.083 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.172 4.172 23 C -0.153 4.153 24 C -0.096 4.096 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.142 0.858 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.556 0.319 18.643 18.982 hybrid contribution 0.609 -1.121 0.095 1.279 sum -2.947 -0.802 18.738 18.985 Atomic orbital electron populations 1.22142 0.95796 1.01005 1.03004 1.21994 0.95166 0.85730 1.01885 1.43604 1.54041 1.11527 1.06266 1.19230 1.40051 0.96704 0.87058 0.87032 1.25567 0.96485 0.98371 0.94549 1.69548 1.38603 1.39513 0.99000 0.87095 0.80575 0.82685 0.79717 1.19701 1.21032 1.18443 1.18363 0.85866 0.88293 0.82853 1.90734 1.49821 1.16871 1.85426 1.23946 0.92730 1.00389 0.94887 1.23352 1.05637 0.95862 0.98373 1.20401 0.77558 0.87598 0.87010 1.90760 1.33131 1.72958 1.30488 1.20744 1.03241 0.95209 0.95366 1.21423 0.95135 0.92967 0.98753 1.21004 1.01963 1.00038 0.92098 1.20108 0.97412 0.94430 0.95335 1.20825 1.02341 0.99242 0.94814 1.20968 1.02406 0.93589 0.98383 1.21432 0.96523 1.00021 0.91608 0.92587 0.92770 0.91385 0.90423 0.91824 0.91010 0.85417 0.85067 0.84904 0.85793 0.91073 0.91479 0.91465 0.85831 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.15 37.16 0.38 -2.42 16 2 C 0.08 1.52 4.46 -4.04 -0.02 1.50 16 3 N -0.43 -10.86 2.25 -116.28 -0.26 -11.12 16 4 C -0.30 -8.67 9.42 -15.18 -0.14 -8.81 16 5 H 0.11 3.65 7.77 -52.49 -0.41 3.24 16 6 C 0.06 1.63 5.22 -17.35 -0.09 1.54 16 7 N -0.83 -23.39 13.93 55.55 0.77 -22.61 16 8 Si 0.87 19.85 25.32 -169.99 -4.30 15.55 16 9 H -0.27 -5.59 6.44 56.52 0.36 -5.23 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.45 11.33 6.87 -12.79 -0.09 11.24 16 13 O -0.55 -15.94 13.14 -19.72 -0.26 -16.20 16 14 C -0.10 -1.82 8.62 -37.22 -0.32 -2.15 16 15 C -0.21 -3.55 9.40 -37.22 -0.35 -3.90 16 16 C 0.40 7.69 6.54 -32.22 -0.21 7.48 16 17 O -0.40 -9.66 13.23 -19.67 -0.26 -9.92 16 18 C -0.14 -2.28 5.88 -104.90 -0.62 -2.90 16 19 C -0.06 -0.97 9.60 -39.15 -0.38 -1.34 16 20 C -0.13 -1.60 9.68 -39.64 -0.38 -1.98 16 21 C -0.07 -0.77 5.89 -104.50 -0.62 -1.39 16 22 C -0.12 -0.85 10.00 36.00 0.36 -0.49 16 23 C -0.14 -1.44 9.68 -39.64 -0.38 -1.83 16 24 C -0.08 -0.96 9.46 -39.15 -0.37 -1.33 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.90 7.62 -51.93 -0.40 0.51 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.63 3.09 -51.93 -0.16 1.47 16 29 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 30 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 31 H 0.13 1.90 6.28 -52.49 -0.33 1.57 16 32 H 0.13 1.59 6.35 -52.49 -0.33 1.26 16 33 H 0.13 2.09 7.65 -52.49 -0.40 1.69 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.13 1.30 6.24 -52.49 -0.33 0.98 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -34.67 325.74 -7.44 -42.11 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.81 Total: 4.07 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.23 Total: -6.78 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.51 Total: -33.74 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.52 Total: -26.12 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.30 Total: 15.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.67 -7.44 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900361895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.820 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds