Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47140 * 2 1 4 4 C 1.35726 * 119.99949 * 264.12744 * 3 2 1 5 5 H 1.07993 * 120.00240 * 148.23260 * 4 3 2 6 6 C 1.39966 * 119.99786 * 328.22774 * 4 3 2 7 7 N 1.30789 * 119.99829 * 152.45420 * 6 4 3 8 8 Si 1.86797 * 120.00125 * 332.45053 * 6 4 3 9 9 H 1.48496 * 109.47216 * 91.63911 * 8 6 4 10 10 H 1.48501 * 109.47154 * 211.63877 * 8 6 4 11 11 H 1.48499 * 109.47267 * 331.63849 * 8 6 4 12 12 C 1.34770 * 120.00047 * 84.12649 * 3 2 1 13 13 O 1.21727 * 120.00212 * 179.97438 * 12 3 2 14 14 C 1.46825 * 119.99910 * 0.02562 * 12 3 2 15 15 C 1.35126 * 119.99597 * 189.18317 * 14 12 3 16 16 C 1.46828 * 120.00428 * 30.25647 * 15 14 12 17 17 O 1.21675 * 119.99743 * 4.60036 * 16 15 14 18 18 C 1.47756 * 120.00340 * 184.60955 * 16 15 14 19 19 C 1.39712 * 120.15890 * 180.02562 * 18 16 15 20 20 C 1.37912 * 119.84321 * 179.97438 * 19 18 16 21 21 C 1.38407 * 120.15654 * 0.25146 * 20 19 18 22 22 C 1.50693 * 119.84544 * 179.74690 * 21 20 19 23 23 C 1.38411 * 120.31000 * 359.48772 * 21 20 19 24 24 C 1.37901 * 120.15832 * 0.51281 * 23 21 20 25 25 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46587 * 300.00249 * 1 2 3 27 27 H 1.09002 * 109.47014 * 59.99772 * 1 2 3 28 28 H 1.09005 * 109.47070 * 240.00298 * 2 1 3 29 29 H 1.08996 * 109.47675 * 120.00007 * 2 1 3 30 30 H 0.97002 * 120.00205 * 179.97438 * 7 6 4 31 31 H 1.07994 * 119.99797 * 9.17982 * 14 12 3 32 32 H 1.07997 * 119.99340 * 210.25658 * 15 14 12 33 33 H 1.07996 * 120.07779 * 359.97438 * 19 18 16 34 34 H 1.07998 * 119.92160 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.47187 * 89.99657 * 22 21 20 36 36 H 1.09004 * 109.47419 * 209.99859 * 22 21 20 37 37 H 1.09002 * 109.47192 * 329.99606 * 22 21 20 38 38 H 1.08006 * 119.92181 * 180.23702 * 23 21 20 39 39 H 1.08002 * 120.07907 * 179.76234 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3579 1.9810 -1.1693 5 1 2.2225 3.0456 -1.2894 6 6 2.8838 1.2195 -2.2194 7 7 2.7179 1.6094 -3.4567 8 14 3.8228 -0.3533 -1.8536 9 1 2.8844 -1.5041 -1.8652 10 1 4.8689 -0.5572 -2.8877 11 1 4.4616 -0.2490 -0.5171 12 6 2.1304 2.0564 1.1610 13 8 2.5366 3.2039 1.1611 14 6 1.7635 1.4074 2.4259 15 6 1.6970 2.1337 3.5634 16 6 1.3288 3.5540 3.5073 17 8 1.0023 4.0563 2.4483 18 6 1.3549 4.3732 4.7366 19 6 1.0046 5.7248 4.6870 20 6 1.0308 6.4833 5.8385 21 6 1.4079 5.9098 7.0404 22 6 1.4395 6.7465 8.2933 23 6 1.7510 4.5701 7.0980 24 6 1.7294 3.7997 5.9544 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.0826 1.0819 -4.1845 31 1 1.5467 0.3497 2.4471 32 1 1.9148 1.6695 4.5139 33 1 0.7141 6.1746 3.7491 34 1 0.7606 7.5283 5.8015 35 1 0.4677 6.7014 8.7849 36 1 2.2056 6.3630 8.9672 37 1 1.6680 7.7803 8.0342 38 1 2.0407 4.1281 8.0399 39 1 2.0011 2.7554 6.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900361895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -19.748499 kcal Electronic energy + Delta-G solvation = -21982.197582 eV Core-core repulsion = 18662.808220 eV Total energy + Delta-G solvation = -3319.389363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22135 -40.38829 -39.14058 -36.97449 -34.60445 -34.08852 -33.42740 -31.90715 -31.41466 -28.90508 -27.54392 -25.13841 -24.50472 -23.53984 -22.82698 -21.31096 -19.35247 -18.94147 -18.68340 -17.76613 -17.33005 -16.48780 -16.12683 -15.88492 -15.62041 -15.44997 -15.14363 -14.95125 -14.71428 -14.51154 -14.48141 -14.34366 -13.94788 -13.72286 -13.64436 -13.07050 -12.97861 -12.80664 -12.72280 -12.53593 -12.49765 -11.99098 -11.88966 -11.62284 -11.10726 -10.82920 -10.51788 -9.94104 -9.87237 -9.77128 -9.60669 -8.63725 -6.04526 -0.63401 0.19283 0.44236 1.16124 1.32033 1.44149 1.93886 2.12029 2.40797 2.72857 2.94580 3.02097 3.19417 3.83143 3.87204 3.98527 4.02589 4.10126 4.20668 4.35425 4.39742 4.45217 4.50087 4.54540 4.79093 4.82524 4.88487 4.90034 4.94209 4.99511 5.09550 5.19164 5.28649 5.34935 5.37927 5.45866 5.59893 5.60737 6.00645 6.01299 6.49862 6.80720 6.97443 7.28946 7.98751 8.54409 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.034576 B = 0.003538 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.607292 B = 7911.376421 C = 8131.401268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 N -0.451 5.451 4 C -0.345 4.345 5 H 0.033 0.967 6 C 0.015 3.985 7 N -0.889 5.889 8 Si 0.951 3.049 9 H -0.224 1.224 10 H -0.283 1.283 11 H -0.259 1.259 12 C 0.446 3.554 13 O -0.605 6.605 14 C -0.112 4.112 15 C -0.174 4.174 16 C 0.385 3.615 17 O -0.468 6.468 18 C -0.181 4.181 19 C -0.090 4.090 20 C -0.140 4.140 21 C -0.062 4.062 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.068 4.068 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.286 0.714 31 H 0.184 0.816 32 H 0.199 0.801 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.165 0.835 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -4.218 25.293 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.055 4.055 3 N -0.171 5.171 4 C -0.473 4.473 5 H 0.051 0.949 6 C -0.190 4.190 7 N -0.524 5.524 8 Si 0.772 3.228 9 H -0.149 1.149 10 H -0.210 1.210 11 H -0.182 1.182 12 C 0.239 3.761 13 O -0.490 6.490 14 C -0.133 4.133 15 C -0.195 4.195 16 C 0.266 3.734 17 O -0.345 6.345 18 C -0.182 4.182 19 C -0.109 4.109 20 C -0.158 4.158 21 C -0.062 4.062 22 C -0.172 4.172 23 C -0.149 4.149 24 C -0.085 4.085 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.201 0.799 32 H 0.216 0.784 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.182 0.818 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.182 -3.406 24.473 24.913 hybrid contribution 0.373 0.335 -1.336 1.426 sum -2.809 -3.071 23.137 23.509 Atomic orbital electron populations 1.22100 0.94204 1.03493 1.01498 1.22329 0.96620 0.82897 1.03627 1.43630 1.55067 1.13503 1.04874 1.18592 1.44484 0.94039 0.90198 0.94860 1.26401 0.96162 1.02946 0.93491 1.69656 1.40219 1.42292 1.00257 0.85894 0.79085 0.78651 0.79156 1.14879 1.20984 1.18247 1.19468 0.84175 0.87470 0.84956 1.90698 1.51720 1.19670 1.86929 1.24043 0.94956 1.02807 0.91530 1.24098 1.00539 0.94184 1.00644 1.21406 0.75378 0.89304 0.87361 1.90763 1.36286 1.74357 1.33137 1.20604 1.06952 0.95212 0.95438 1.21403 0.96808 0.93761 0.98917 1.21224 1.02039 1.00754 0.91805 1.20616 0.94673 0.95182 0.95779 1.20925 1.03886 0.99024 0.93323 1.21462 1.00843 0.93300 0.99317 1.21756 0.94832 1.01650 0.90305 0.87868 0.92317 0.94987 0.91287 0.87049 0.90382 0.79923 0.78406 0.88013 0.84149 0.89490 0.89532 0.90875 0.81759 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 10.15 71.98 0.73 -4.39 16 2 C 0.07 2.54 4.46 86.38 0.39 2.93 16 3 N -0.45 -23.38 2.25 -639.99 -1.44 -24.82 16 4 C -0.34 -21.61 9.42 84.51 0.80 -20.82 16 5 H 0.03 2.51 7.77 -2.91 -0.02 2.49 16 6 C 0.02 0.88 5.22 85.27 0.44 1.32 16 7 N -0.89 -53.68 13.93 21.83 0.30 -53.37 16 8 Si 0.95 41.32 25.32 68.60 1.74 43.06 16 9 H -0.22 -8.11 6.44 99.48 0.64 -7.47 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 12 C 0.45 23.03 6.87 86.49 0.59 23.63 16 13 O -0.60 -38.11 13.14 19.36 0.25 -37.86 16 14 C -0.11 -3.92 8.62 23.80 0.21 -3.71 16 15 C -0.17 -5.28 9.40 23.80 0.22 -5.06 16 16 C 0.38 15.07 6.54 27.04 0.18 15.24 16 17 O -0.47 -24.46 13.23 19.52 0.26 -24.20 16 18 C -0.18 -5.61 5.88 -20.05 -0.12 -5.73 16 19 C -0.09 -2.84 9.60 22.55 0.22 -2.62 16 20 C -0.14 -3.24 9.68 22.23 0.22 -3.02 16 21 C -0.06 -1.10 5.89 -19.79 -0.12 -1.21 16 22 C -0.12 -1.16 10.00 71.23 0.71 -0.44 16 23 C -0.13 -2.13 9.68 22.23 0.22 -1.91 16 24 C -0.07 -1.39 9.46 22.55 0.21 -1.18 16 25 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 1.85 7.62 -2.39 -0.02 1.84 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 2.73 3.09 -2.38 -0.01 2.72 16 29 H 0.11 3.12 6.33 -2.39 -0.02 3.11 16 30 H 0.29 15.53 8.30 -92.71 -0.77 14.76 16 31 H 0.18 4.31 6.28 -2.91 -0.02 4.30 16 32 H 0.20 3.34 6.35 -2.91 -0.02 3.32 16 33 H 0.10 3.68 7.65 -2.91 -0.02 3.66 16 34 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.60 8.08 -2.38 -0.02 0.58 16 37 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 38 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.16 2.15 6.24 -2.91 -0.02 2.13 16 Total: -1.00 -92.63 325.74 7.01 -85.62 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.00 Total: 18.55 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.90 Total: -6.98 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.14 Total: -78.20 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: 0.51 Total: -62.06 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.74 Total: 43.06 kcal Total: -92.63 7.01 -85.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900361895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.874 kcal (2) G-P(sol) polarization free energy of solvation -92.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds