Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35404 * 124.77346 * 2 1 4 4 C 1.36477 * 109.76075 * 179.97438 * 3 2 1 5 5 C 1.46737 * 126.77816 * 179.97438 * 4 3 2 6 6 O 1.21598 * 119.99862 * 180.02562 * 5 4 3 7 7 O 1.34839 * 120.00095 * 0.02562 * 5 4 3 8 8 C 1.45201 * 116.99862 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47094 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47432 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47616 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99719 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00327 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99972 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00209 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46944 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47249 * 119.99752 * 15 13 11 18 18 H 1.48502 * 109.47339 * 239.99842 * 15 13 11 19 19 C 1.47473 * 106.43859 * 359.97438 * 4 3 2 20 20 C 1.39265 * 134.00007 * 179.97438 * 19 4 3 21 21 C 1.37768 * 119.66666 * 180.02562 * 20 19 4 22 22 C 1.38751 * 120.29674 * 0.02562 * 21 20 19 23 23 C 1.37761 * 120.63620 * 0.02562 * 22 21 20 24 24 C 1.37979 * 124.77634 * 179.70114 * 2 1 3 25 25 H 1.09002 * 109.47391 * 90.02102 * 1 2 3 26 26 H 1.09001 * 109.46813 * 330.02158 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.02285 * 1 2 3 28 28 H 1.07996 * 125.11937 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47497 * 299.99851 * 8 7 5 30 30 H 1.09005 * 109.47185 * 60.00018 * 8 7 5 31 31 H 1.09003 * 109.47282 * 300.00390 * 9 8 7 32 32 H 1.08999 * 109.47365 * 60.00311 * 9 8 7 33 33 H 1.09003 * 109.47048 * 300.00340 * 10 9 8 34 34 H 1.09005 * 109.47174 * 59.99785 * 10 9 8 35 35 H 0.97003 * 119.99825 * 180.02562 * 14 13 11 36 36 H 1.07992 * 120.16618 * 359.97438 * 20 19 4 37 37 H 1.07997 * 119.84693 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.67712 * 180.02562 * 22 21 20 39 39 H 1.07999 * 120.03590 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.1122 0.0000 4 6 3.5554 0.7587 0.0006 5 6 4.7084 1.6663 0.0002 6 8 5.8375 1.2149 0.0004 7 8 4.5159 3.0009 -0.0002 8 6 5.7023 3.8380 0.0001 9 6 5.2874 5.3107 0.0001 10 6 6.5374 6.1928 -0.0002 11 6 6.1288 7.6433 -0.0008 12 1 5.0820 7.9094 -0.0005 13 6 7.0911 8.6307 -0.0017 14 7 8.3657 8.3066 -0.0026 15 14 6.5845 10.4287 -0.0017 16 1 5.1026 10.5254 0.0000 17 1 7.1249 11.0952 1.2103 18 1 7.1231 11.0948 -1.2147 19 6 3.5921 -0.7156 0.0016 20 6 4.6177 -1.6578 0.0021 21 6 4.3099 -3.0006 0.0025 22 6 2.9858 -3.4153 0.0020 23 6 1.9617 -2.4939 0.0005 24 6 2.2520 -1.1333 0.0059 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.8660 2.1264 -0.0004 29 1 6.2951 3.6280 0.8903 30 1 6.2958 3.6274 -0.8897 31 1 4.6943 5.5211 -0.8899 32 1 4.6942 5.5210 0.8901 33 1 7.1308 5.9824 0.8896 34 1 7.1304 5.9824 -0.8904 35 1 9.0427 9.0013 -0.0029 36 1 5.6490 -1.3373 0.0012 37 1 5.1029 -3.7338 0.0033 38 1 2.7560 -4.4706 0.0028 39 1 0.9345 -2.8275 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = -58.394126 kcal Electronic energy + Delta-G solvation = -21133.824926 eV Core-core repulsion = 17812.759763 eV Total energy + Delta-G solvation = -3321.065163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.57044 -41.00102 -38.11838 -37.64232 -35.90365 -34.09074 -33.57794 -31.27818 -30.29516 -29.05347 -27.74900 -25.40722 -24.10837 -23.50838 -22.22869 -22.13658 -20.95555 -18.81076 -18.57086 -17.98256 -17.60466 -17.17511 -16.57464 -16.48383 -16.42614 -16.24227 -15.51589 -14.96009 -14.91846 -14.57072 -14.02516 -13.92737 -13.86587 -13.67058 -13.56778 -13.29220 -12.84426 -12.62794 -12.49091 -12.34655 -12.27986 -12.05836 -12.05531 -11.73231 -11.39445 -11.39319 -11.19722 -10.71530 -10.57803 -9.31240 -8.79767 -8.21267 -6.33029 -0.10862 0.47845 0.82156 1.41723 1.42461 1.53732 1.56795 1.84847 2.11044 2.42097 2.90101 3.12640 3.59665 3.65047 3.77693 4.01356 4.07567 4.10386 4.19810 4.25926 4.42092 4.46676 4.48502 4.57670 4.62780 4.74432 4.77173 4.80971 4.92805 5.08904 5.09224 5.39460 5.43375 5.51209 5.53804 5.64292 5.65507 5.66597 5.80674 6.06609 6.17910 6.19505 6.80917 6.84632 7.36558 8.91443 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.002639 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.824567 B =10608.846551 C =11422.619118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.463 5.463 3 C 0.169 3.831 4 C -0.273 4.273 5 C 0.530 3.470 6 O -0.558 6.558 7 O -0.353 6.353 8 C 0.080 3.920 9 C -0.090 4.090 10 C 0.024 3.976 11 C -0.540 4.540 12 H 0.067 0.933 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.258 1.258 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.091 4.091 20 C -0.106 4.106 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.113 4.113 24 C 0.071 3.929 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.217 0.783 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.069 0.931 33 H -0.005 1.005 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.572 -23.539 0.087 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.142 5.142 3 C 0.034 3.966 4 C -0.282 4.282 5 C 0.379 3.621 6 O -0.450 6.450 7 O -0.270 6.270 8 C 0.006 3.994 9 C -0.128 4.128 10 C -0.013 4.013 11 C -0.578 4.578 12 H 0.086 0.914 13 C -0.202 4.202 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.182 1.182 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.133 4.133 24 C -0.032 4.032 25 H 0.110 0.890 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.234 0.766 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.455 -23.594 0.084 31.890 hybrid contribution 1.116 1.193 -0.013 1.634 sum -20.339 -22.400 0.071 30.257 Atomic orbital electron populations 1.22534 0.72932 1.06868 1.05332 1.44029 1.08374 1.03262 1.58540 1.22723 0.88559 0.93358 0.91995 1.19106 0.91423 0.91269 1.26401 1.20528 0.88518 0.81206 0.71842 1.90783 1.26748 1.78156 1.49358 1.86504 1.38724 1.17482 1.84258 1.23103 0.84954 0.89825 1.01471 1.21440 0.99374 0.89226 1.02731 1.18951 0.92837 0.94139 0.95358 1.21649 0.93547 0.91974 1.50626 0.91436 1.26054 0.94822 1.04648 0.94635 1.70123 1.01001 1.34852 1.51613 0.85306 0.79023 0.78438 0.77706 1.18151 1.20442 1.20435 1.19010 0.94124 0.90964 1.05327 1.20731 0.98061 0.93318 1.00354 1.21292 0.98270 0.94324 1.01334 1.21267 0.91233 1.00785 0.98862 1.20456 1.01599 0.87565 1.03675 1.18499 0.88635 0.89744 1.06316 0.89021 0.87149 0.87819 0.76606 0.92375 0.92378 0.91202 0.91185 0.98645 0.98650 0.92706 0.87614 0.83849 0.81930 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.98 127.77 1.40 1.68 16 2 N -0.46 -7.15 3.14 -538.58 -1.69 -8.85 16 3 C 0.17 3.36 11.06 83.73 0.93 4.29 16 4 C -0.27 -8.12 6.27 -19.03 -0.12 -8.24 16 5 C 0.53 19.65 7.93 70.04 0.56 20.20 16 6 O -0.56 -24.29 15.95 19.52 0.31 -23.98 16 7 O -0.35 -12.79 10.05 -57.52 -0.58 -13.37 16 8 C 0.08 3.23 5.48 71.98 0.39 3.63 16 9 C -0.09 -3.85 5.53 30.59 0.17 -3.68 16 10 C 0.02 1.32 4.97 29.85 0.15 1.46 16 11 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 12 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 13 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 14 N -0.94 -57.90 13.29 21.45 0.28 -57.61 16 15 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.09 -2.57 6.27 -20.08 -0.13 -2.69 16 20 C -0.11 -2.94 9.85 22.41 0.22 -2.72 16 21 C -0.13 -2.61 10.03 22.28 0.22 -2.39 16 22 C -0.10 -1.45 10.01 22.28 0.22 -1.23 16 23 C -0.11 -1.61 9.91 22.37 0.22 -1.39 16 24 C 0.07 1.44 6.79 38.91 0.26 1.71 16 25 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.11 0.10 8.13 -2.39 -0.02 0.08 16 27 H 0.10 0.13 8.03 -2.38 -0.02 0.11 16 28 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.00 -0.29 8.14 -2.38 -0.02 -0.30 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.11 3.38 7.45 -2.91 -0.02 3.36 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.16 1.03 8.01 -2.91 -0.02 1.01 16 Total: -1.00 -78.93 341.77 6.59 -72.34 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.04 Total: 4.91 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 5.20 Total: -19.81 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -1.41 Total: -66.46 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.27 Total: -37.35 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -78.93 6.59 -72.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.946 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds