Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 115.55200 * 2 1 4 4 C 1.52994 * 117.52104 * 214.29271 * 2 1 3 5 5 C 1.53000 * 117.49619 * 145.66126 * 2 1 3 6 6 H 1.08999 * 117.50103 * 0.02562 * 5 2 1 7 7 C 1.53004 * 117.50066 * 215.00423 * 5 2 1 8 8 H 1.08999 * 115.56231 * 274.31606 * 7 5 2 9 9 C 1.52994 * 117.50005 * 128.62200 * 7 5 2 10 10 C 1.53003 * 60.00353 * 252.51508 * 9 7 5 11 11 H 1.08998 * 117.51903 * 107.47976 * 10 9 7 12 12 N 1.46500 * 117.49431 * 252.51149 * 10 9 7 13 13 S 1.65598 * 119.99523 * 213.61873 * 12 10 9 14 14 O 1.42101 * 104.28071 * 308.93108 * 13 12 10 15 15 O 1.42103 * 104.27787 * 181.07577 * 13 12 10 16 16 C 1.81403 * 104.45114 * 65.00132 * 13 12 10 17 17 C 1.52994 * 109.47158 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47119 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 H 1.08994 * 109.47888 * 274.33469 * 1 2 3 28 28 H 1.09005 * 109.47301 * 34.33940 * 1 2 3 29 29 H 1.09005 * 109.47160 * 154.33093 * 1 2 3 30 30 H 1.09000 * 117.50153 * 145.03770 * 4 2 1 31 31 H 1.08995 * 117.49907 * 0.02562 * 4 2 1 32 32 H 1.09002 * 117.50380 * 145.02256 * 9 7 5 33 33 H 1.09004 * 117.49783 * 0.02562 * 9 7 5 34 34 H 0.96997 * 120.00089 * 33.62320 * 12 10 9 35 35 H 1.08998 * 109.46785 * 60.00241 * 16 13 12 36 36 H 1.08994 * 109.46954 * 300.00048 * 16 13 12 37 37 H 1.09004 * 109.46806 * 60.00263 * 17 16 13 38 38 H 1.09000 * 109.47828 * 300.00567 * 17 16 13 39 39 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 40 40 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2363 -1.1206 0.7656 6 1 1.6111 -1.8581 1.2688 7 6 3.5486 -0.7752 1.4724 8 1 4.4454 -0.8378 0.8561 9 6 3.6777 -1.1567 2.9484 10 6 3.5061 0.3105 2.5497 11 1 2.5434 0.7788 2.7546 12 7 4.6741 1.1862 2.6740 13 16 4.4753 2.7780 3.0850 14 8 3.4941 3.2552 2.1746 15 8 5.7941 3.3073 3.0845 16 6 3.8090 2.7303 4.7715 17 6 3.5801 4.1585 5.2700 18 6 3.0176 4.1183 6.6922 19 6 2.7915 5.5251 7.1830 20 1 3.0252 6.3640 6.5442 21 6 2.2803 5.7411 8.4453 22 7 1.9953 4.7195 9.2229 23 14 1.9928 7.4847 9.0507 24 1 2.3910 8.4479 7.9929 25 1 0.5539 7.6670 9.3694 26 1 2.8045 7.7252 10.2708 27 1 -0.3635 0.0777 1.0246 28 1 -0.3634 0.8486 -0.5797 29 1 -0.3634 -0.9263 -0.4452 30 1 3.1722 -0.8751 -1.2674 31 1 1.6120 -1.8585 -1.2680 32 1 4.6595 -1.4704 3.3032 33 1 2.8279 -1.6542 3.4158 34 1 5.5637 0.8336 2.5154 35 1 4.5181 2.2260 5.4281 36 1 2.8633 2.1884 4.7733 37 1 2.8713 4.6632 4.6135 38 1 4.5260 4.7001 5.2682 39 1 3.7260 3.6134 7.3490 40 1 2.0716 3.5769 6.6936 41 1 1.6361 4.8715 10.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921309501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -48.533143 kcal Electronic energy + Delta-G solvation = -20531.778957 eV Core-core repulsion = 17346.585350 eV Total energy + Delta-G solvation = -3185.193607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.21946 -36.92858 -36.53593 -35.76406 -34.67753 -32.24878 -32.19264 -28.70349 -27.81600 -23.74563 -23.71614 -22.41592 -21.15966 -20.69954 -20.10670 -19.25393 -17.54577 -16.79091 -16.50460 -15.75908 -15.61401 -15.29387 -14.57175 -14.48569 -14.19227 -13.66900 -13.28210 -13.01267 -12.61897 -12.41244 -12.31363 -12.22660 -11.99543 -11.94204 -11.82719 -11.78312 -11.69509 -11.42469 -11.24212 -10.94161 -10.84915 -10.81069 -10.45948 -10.34642 -9.96126 -9.79597 -9.44709 -9.18259 -8.91758 -8.41672 -6.06417 -4.09326 0.43218 2.75473 3.29042 3.31763 3.36625 3.41623 3.71280 3.94857 4.26817 4.40181 4.42280 4.52405 4.62979 4.73623 4.77767 4.88707 5.05461 5.13950 5.17622 5.23151 5.27850 5.30631 5.54029 5.58042 5.58542 5.63386 5.87241 5.89007 5.91884 5.95520 6.05776 6.19825 6.25870 6.44319 6.82835 6.87096 7.56604 7.66235 7.91820 8.32253 8.97176 9.55473 11.04836 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.003347 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.609328 B = 8364.026174 C = 8790.057574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.150 4.150 3 H 0.111 0.889 4 C -0.173 4.173 5 C -0.124 4.124 6 H 0.108 0.892 7 C -0.128 4.128 8 H 0.108 0.892 9 C -0.181 4.181 10 C 0.093 3.907 11 H 0.138 0.862 12 N -1.095 6.095 13 S 2.601 3.399 14 O -0.959 6.959 15 O -0.963 6.963 16 C -0.607 4.607 17 C -0.106 4.106 18 C 0.030 3.970 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -15.024 -16.395 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.168 4.168 3 H 0.129 0.871 4 C -0.210 4.210 5 C -0.143 4.143 6 H 0.126 0.874 7 C -0.149 4.149 8 H 0.126 0.874 9 C -0.220 4.220 10 C -0.016 4.016 11 H 0.155 0.845 12 N -0.849 5.849 13 S 2.697 3.303 14 O -0.948 6.948 15 O -0.954 6.954 16 C -0.739 4.739 17 C -0.146 4.146 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.322 -14.229 -16.783 22.043 hybrid contribution 0.064 0.199 0.972 0.995 sum 1.386 -14.030 -15.810 21.183 Atomic orbital electron populations 1.21379 0.92791 1.01776 1.02145 1.22495 0.95275 0.95162 1.03892 0.87074 1.23136 1.02666 1.01670 0.93508 1.21853 0.96905 1.02021 0.93474 0.87432 1.22255 0.97927 1.03404 0.91301 0.87351 1.23574 1.03961 0.97715 0.96784 1.21456 0.89584 0.86954 1.03581 0.84484 1.55367 1.13591 1.29961 1.85943 1.05346 0.74734 0.72231 0.77997 1.93577 1.62806 1.78172 1.60287 1.93583 1.37448 1.76461 1.87861 1.30547 1.12883 1.08831 1.21595 1.21509 1.01967 0.88624 1.02477 1.19066 0.96206 0.97524 0.87999 1.21298 1.42726 0.92472 0.99898 0.92310 1.25024 0.95416 0.97161 0.96812 1.69970 1.44297 1.30011 1.09141 0.86500 0.77852 0.84674 0.78794 1.19588 1.20941 1.20947 0.91976 0.91982 0.92795 0.88925 0.88884 0.88140 0.87701 0.75205 0.85237 0.85468 0.91540 0.91569 0.96113 0.96096 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.19 37.16 0.38 -0.64 16 2 C -0.15 -1.38 6.05 -90.63 -0.55 -1.93 16 3 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.17 -1.37 9.90 -26.73 -0.26 -1.64 16 5 C -0.12 -1.03 5.59 -90.62 -0.51 -1.54 16 6 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.13 -1.10 5.79 -90.62 -0.53 -1.62 16 8 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.18 -1.41 10.18 -26.73 -0.27 -1.68 16 10 C 0.09 0.91 5.99 -67.92 -0.41 0.50 16 11 H 0.14 1.36 8.11 -51.93 -0.42 0.94 16 12 N -1.10 -11.71 5.93 -4.89 -0.03 -11.74 16 13 S 2.60 37.72 5.44 -107.50 -0.58 37.14 16 14 O -0.96 -16.62 17.82 -57.54 -1.03 -17.65 16 15 O -0.96 -16.85 18.08 -57.54 -1.04 -17.89 16 16 C -0.61 -9.21 6.07 37.15 0.23 -8.99 16 17 C -0.11 -2.14 5.16 -26.74 -0.14 -2.28 16 18 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 19 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 3.64 8.92 -34.47 -0.31 3.33 16 35 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 36 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -34.33 358.88 -11.18 -45.51 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.02 Total: 1.22 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -2.61 Total: -32.76 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.71 Total: -37.51 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -2.07 Total: -35.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 37.72 SS G_CDS: -0.58 Total: 37.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.33 -11.18 -45.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921309501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.026 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds