Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 115.55200 * 2 1 4 4 C 1.52994 * 117.52104 * 214.29271 * 2 1 3 5 5 C 1.53000 * 117.49619 * 145.66126 * 2 1 3 6 6 H 1.08999 * 117.50103 * 0.02562 * 5 2 1 7 7 C 1.53004 * 117.50066 * 215.00423 * 5 2 1 8 8 H 1.08999 * 115.56231 * 274.31606 * 7 5 2 9 9 C 1.52994 * 117.50005 * 128.62200 * 7 5 2 10 10 C 1.53003 * 60.00353 * 252.51508 * 9 7 5 11 11 H 1.08998 * 117.51903 * 107.47976 * 10 9 7 12 12 N 1.46500 * 117.49431 * 252.51149 * 10 9 7 13 13 S 1.65598 * 119.99523 * 213.61873 * 12 10 9 14 14 O 1.42101 * 104.28071 * 308.93108 * 13 12 10 15 15 O 1.42103 * 104.27787 * 181.07577 * 13 12 10 16 16 C 1.81403 * 104.45114 * 65.00132 * 13 12 10 17 17 C 1.52994 * 109.47158 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47119 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 H 1.08994 * 109.47888 * 274.33469 * 1 2 3 28 28 H 1.09005 * 109.47301 * 34.33940 * 1 2 3 29 29 H 1.09005 * 109.47160 * 154.33093 * 1 2 3 30 30 H 1.09000 * 117.50153 * 145.03770 * 4 2 1 31 31 H 1.08995 * 117.49907 * 0.02562 * 4 2 1 32 32 H 1.09002 * 117.50380 * 145.02256 * 9 7 5 33 33 H 1.09004 * 117.49783 * 0.02562 * 9 7 5 34 34 H 0.96997 * 120.00089 * 33.62320 * 12 10 9 35 35 H 1.08998 * 109.46785 * 60.00241 * 16 13 12 36 36 H 1.08994 * 109.46954 * 300.00048 * 16 13 12 37 37 H 1.09004 * 109.46806 * 60.00263 * 17 16 13 38 38 H 1.09000 * 109.47828 * 300.00567 * 17 16 13 39 39 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 40 40 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2363 -1.1206 0.7656 6 1 1.6111 -1.8581 1.2688 7 6 3.5486 -0.7752 1.4724 8 1 4.4454 -0.8378 0.8561 9 6 3.6777 -1.1567 2.9484 10 6 3.5061 0.3105 2.5497 11 1 2.5434 0.7788 2.7546 12 7 4.6741 1.1862 2.6740 13 16 4.4753 2.7780 3.0850 14 8 3.4941 3.2552 2.1746 15 8 5.7941 3.3073 3.0845 16 6 3.8090 2.7303 4.7715 17 6 3.5801 4.1585 5.2700 18 6 3.0176 4.1183 6.6922 19 6 2.7915 5.5251 7.1830 20 1 3.0252 6.3640 6.5442 21 6 2.2803 5.7411 8.4453 22 7 1.9953 4.7195 9.2229 23 14 1.9928 7.4847 9.0507 24 1 2.3910 8.4479 7.9929 25 1 0.5539 7.6670 9.3694 26 1 2.8045 7.7252 10.2708 27 1 -0.3635 0.0777 1.0246 28 1 -0.3634 0.8486 -0.5797 29 1 -0.3634 -0.9263 -0.4452 30 1 3.1722 -0.8751 -1.2674 31 1 1.6120 -1.8585 -1.2680 32 1 4.6595 -1.4704 3.3032 33 1 2.8279 -1.6542 3.4158 34 1 5.5637 0.8336 2.5154 35 1 4.5181 2.2260 5.4281 36 1 2.8633 2.1884 4.7733 37 1 2.8713 4.6632 4.6135 38 1 4.5260 4.7001 5.2682 39 1 3.7260 3.6134 7.3490 40 1 2.0716 3.5769 6.6936 41 1 1.6361 4.8715 10.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921309501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -71.107190 kcal Electronic energy + Delta-G solvation = -20532.757841 eV Core-core repulsion = 17346.585350 eV Total energy + Delta-G solvation = -3186.172491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90650 -38.20629 -37.28916 -37.06869 -36.47221 -34.16816 -33.10587 -29.66051 -29.34727 -25.63021 -24.37725 -23.16190 -22.46289 -21.76965 -20.85418 -20.37421 -18.76281 -18.51436 -17.64093 -17.15267 -16.59487 -16.43571 -16.30636 -15.69962 -15.19050 -14.51602 -14.38247 -14.10553 -13.95635 -13.77468 -13.51779 -13.28776 -13.21847 -13.16242 -13.01678 -12.95254 -12.77844 -12.75822 -12.60786 -12.34936 -12.14482 -12.09669 -11.75886 -11.52353 -11.36487 -11.16098 -10.95583 -10.58204 -10.46570 -9.77096 -8.23122 -6.33941 -0.77346 1.39475 1.40284 1.53515 1.70413 2.39605 2.62038 2.73544 3.09318 3.10501 3.21711 3.65457 3.73147 3.78998 3.92228 3.96908 4.06315 4.08669 4.23747 4.38988 4.42350 4.48550 4.58535 4.65565 4.94243 4.95059 4.96818 4.98593 5.00024 5.05743 5.24651 5.26477 5.31004 5.37528 5.45373 5.50736 5.62708 5.79308 6.05241 6.19501 6.81820 7.35420 8.88543 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.003347 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.609328 B = 8364.026174 C = 8790.057574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.168 4.168 3 H 0.087 0.913 4 C -0.165 4.165 5 C -0.122 4.122 6 H 0.119 0.881 7 C -0.127 4.127 8 H 0.113 0.887 9 C -0.162 4.162 10 C 0.064 3.936 11 H 0.133 0.867 12 N -1.080 6.080 13 S 2.632 3.368 14 O -0.987 6.987 15 O -0.992 6.992 16 C -0.607 4.607 17 C -0.107 4.107 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.060 0.940 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.963 3.037 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.426 0.574 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.003 0.997 40 H 0.004 0.996 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -16.044 -16.896 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 H 0.105 0.895 4 C -0.202 4.202 5 C -0.140 4.140 6 H 0.137 0.863 7 C -0.147 4.147 8 H 0.131 0.869 9 C -0.201 4.201 10 C -0.044 4.044 11 H 0.151 0.849 12 N -0.837 5.837 13 S 2.728 3.272 14 O -0.977 6.977 15 O -0.983 6.983 16 C -0.738 4.738 17 C -0.147 4.147 18 C -0.007 4.007 19 C -0.590 4.590 20 H 0.078 0.922 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.787 3.213 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.262 0.738 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.418 -15.249 -17.287 23.095 hybrid contribution 0.034 0.438 1.093 1.178 sum 1.453 -14.811 -16.194 21.994 Atomic orbital electron populations 1.21371 0.92193 1.02343 1.02065 1.22449 0.95849 0.94548 1.05746 0.89467 1.23204 1.02595 1.00959 0.93416 1.21943 0.96736 1.01503 0.93848 0.86262 1.22323 0.98275 1.02281 0.91847 0.86902 1.23672 1.05158 0.95339 0.95946 1.21676 0.88944 0.87807 1.05946 0.84932 1.54889 1.14740 1.28707 1.85393 1.04174 0.73322 0.72718 0.77023 1.93542 1.63675 1.79482 1.61017 1.93538 1.38773 1.77906 1.88057 1.30500 1.14642 1.05964 1.22648 1.21323 1.01619 0.92059 0.99650 1.18960 0.95149 0.95860 0.90737 1.21774 1.42873 0.93912 1.00454 0.92223 1.25930 0.95048 1.01537 0.97030 1.70076 1.44978 1.32255 1.09611 0.85430 0.77998 0.79484 0.78355 1.18822 1.20186 1.20223 0.92243 0.92393 0.91419 0.88910 0.87490 0.86894 0.86498 0.73776 0.83531 0.83672 0.91515 0.91600 0.97862 0.97759 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 10.19 71.98 0.73 -1.19 16 2 C -0.17 -2.97 6.05 -10.80 -0.07 -3.04 16 3 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.16 -2.33 9.90 30.59 0.30 -2.03 16 5 C -0.12 -1.80 5.59 -10.79 -0.06 -1.86 16 6 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.13 -1.90 5.79 -10.79 -0.06 -1.96 16 8 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 9 C -0.16 -2.08 10.18 30.59 0.31 -1.77 16 10 C 0.06 1.15 5.99 44.99 0.27 1.42 16 11 H 0.13 2.50 8.11 -2.39 -0.02 2.48 16 12 N -1.08 -21.50 5.93 -169.37 -1.00 -22.51 16 13 S 2.63 74.68 5.44 -56.49 -0.31 74.37 16 14 O -0.99 -34.14 17.82 -127.65 -2.27 -36.41 16 15 O -0.99 -34.16 18.08 -127.65 -2.31 -36.47 16 16 C -0.61 -18.01 6.07 71.98 0.44 -17.57 16 17 C -0.11 -4.35 5.16 30.59 0.16 -4.20 16 18 C 0.03 1.61 4.97 29.85 0.15 1.76 16 19 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 20 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 21 C 0.00 0.16 5.46 84.66 0.46 0.62 16 22 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 23 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 0.85 7.90 -2.38 -0.02 0.83 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.21 8.05 -2.39 -0.02 1.19 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.43 6.68 8.92 -96.75 -0.86 5.81 16 35 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.07 2.65 8.14 -2.38 -0.02 2.64 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -73.46 358.88 -0.58 -74.04 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.13 Total: 17.07 kcal Atomic # 6 Polarization: -63.90 SS G_CDS: 2.87 Total: -61.03 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -0.72 Total: -77.80 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -4.58 Total: -72.88 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 74.68 SS G_CDS: -0.31 Total: 74.37 kcal Total: -73.46 -0.58 -74.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921309501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.930 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds