Wall clock time and date at job start Tue Mar 31 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47205 * 2 1 4 4 C 1.46501 * 120.00148 * 94.95421 * 3 2 1 5 5 C 1.50699 * 109.46992 * 263.37390 * 4 3 2 6 6 H 1.07995 * 120.00135 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00011 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47018 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47144 * 120.00095 * 9 7 5 12 12 H 1.48494 * 109.47166 * 240.00021 * 9 7 5 13 13 C 1.34780 * 119.99483 * 274.95898 * 3 2 1 14 14 O 1.21653 * 120.00301 * 4.11369 * 13 3 2 15 15 C 1.46978 * 119.99660 * 184.10822 * 13 3 2 16 16 C 1.35806 * 125.12638 * 173.85386 * 15 13 3 17 17 C 1.46258 * 106.08268 * 179.97438 * 16 15 13 18 18 C 1.40763 * 105.71383 * 359.97438 * 17 16 15 19 19 C 1.38992 * 119.16195 * 180.02562 * 18 17 16 20 20 C 1.37837 * 119.85307 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.74128 * 359.95912 * 20 19 18 22 22 C 1.36654 * 120.44820 * 0.04143 * 21 20 19 23 23 C 1.50700 * 120.15033 * 180.02562 * 22 21 20 24 24 O 1.34717 * 107.59541 * 359.77623 * 18 17 16 25 25 H 1.08998 * 109.46660 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46783 * 299.99989 * 1 2 3 27 27 H 1.09001 * 109.47208 * 60.00517 * 1 2 3 28 28 H 1.08996 * 109.47473 * 239.99803 * 2 1 3 29 29 H 1.09006 * 109.47630 * 119.99672 * 2 1 3 30 30 H 1.08995 * 109.47310 * 23.37746 * 4 3 2 31 31 H 1.09002 * 109.46766 * 143.38143 * 4 3 2 32 32 H 0.97000 * 120.00327 * 179.97438 * 8 7 5 33 33 H 1.07997 * 126.95998 * 359.92391 * 16 15 13 34 34 H 1.08000 * 120.07418 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.62773 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.77845 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46917 * 269.97937 * 23 22 21 38 38 H 1.09007 * 109.46745 * 29.97489 * 23 22 21 39 39 H 1.08990 * 109.47495 * 149.97696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3658 2.0354 1.2640 5 6 1.2000 2.8646 1.7376 6 1 0.2910 2.9004 1.1555 7 6 1.2935 3.5767 2.9145 8 7 2.4002 3.5326 3.6235 9 14 -0.1518 4.6039 3.5020 10 1 -1.2701 4.4852 2.5321 11 1 -0.5972 4.1168 4.8323 12 1 0.2625 6.0259 3.6088 13 6 2.1478 2.0501 -1.1629 14 8 1.7891 1.5343 -2.2046 15 6 2.7223 3.4029 -1.1725 16 6 3.0097 4.1220 -2.2881 17 6 3.5573 5.3948 -1.8200 18 6 3.5474 5.3201 -0.4144 19 6 4.0166 6.3998 0.3246 20 6 4.4826 7.5238 -0.3230 21 6 4.4903 7.5919 -1.7093 22 6 4.0340 6.5428 -2.4567 23 6 4.0460 6.6237 -3.9615 24 8 3.0378 4.1204 -0.0739 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.6011 1.2785 2.0121 31 1 3.2323 2.6793 1.1136 32 1 2.4662 4.0339 4.4514 33 1 2.8641 3.8157 -3.3135 34 1 4.0161 6.3582 1.4038 35 1 4.8459 8.3608 0.2548 36 1 4.8593 8.4800 -2.2006 37 1 3.1028 7.0444 -4.3103 38 1 4.8695 7.2608 -4.2845 39 1 4.1744 5.6248 -4.3781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:43 Heat of formation + Delta-G solvation = -7.869988 kcal Electronic energy + Delta-G solvation = -23033.193398 eV Core-core repulsion = 19714.319126 eV Total energy + Delta-G solvation = -3318.874272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.97704 -39.05933 -37.70911 -35.41287 -33.00747 -32.71777 -31.16408 -30.78124 -29.08184 -27.12113 -26.61920 -24.20817 -22.94379 -22.20708 -21.87990 -20.19513 -19.17005 -17.17280 -16.82556 -16.50139 -15.71649 -15.63188 -15.37649 -14.70098 -14.26995 -14.09069 -13.70667 -13.45697 -13.42168 -12.85518 -12.75291 -12.68099 -12.33571 -12.13233 -12.12339 -11.61822 -11.47674 -11.43252 -11.23348 -10.97840 -10.82814 -10.56270 -10.46463 -10.04128 -9.72279 -9.68818 -9.56329 -8.52332 -8.24491 -7.97144 -7.63458 -6.13887 -4.18152 0.99475 1.69586 2.29327 3.10696 3.22939 3.31448 3.36220 3.77445 3.82636 3.97004 4.36478 4.77796 4.92142 5.02997 5.20817 5.36144 5.39383 5.48746 5.57354 5.63724 5.67833 5.71644 5.82990 5.89949 5.92951 5.95859 6.18230 6.21516 6.42098 6.49880 6.59455 6.65990 6.70332 6.75419 6.83375 6.94243 7.26911 7.44754 7.63951 7.79389 8.07914 8.13021 8.68458 8.87730 9.46923 10.93840 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.007344 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.676757 B = 3811.844083 C = 5422.470621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 N -0.581 5.581 4 C 0.229 3.771 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.591 3.409 14 O -0.551 6.551 15 C 0.008 3.992 16 C -0.149 4.149 17 C -0.144 4.144 18 C 0.070 3.930 19 C -0.106 4.106 20 C -0.094 4.094 21 C -0.149 4.149 22 C -0.038 4.038 23 C -0.112 4.112 24 O -0.125 6.125 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.263 0.737 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 4.005 -8.380 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.003 4.003 3 N -0.310 5.310 4 C 0.110 3.890 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.378 3.622 14 O -0.433 6.433 15 C -0.043 4.043 16 C -0.170 4.170 17 C -0.145 4.145 18 C 0.020 3.980 19 C -0.124 4.124 20 C -0.112 4.112 21 C -0.167 4.167 22 C -0.039 4.039 23 C -0.169 4.169 24 O -0.024 6.024 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.178 0.822 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.954 3.659 -8.401 9.980 hybrid contribution -0.845 0.765 0.588 1.282 sum 3.109 4.424 -7.813 9.502 Atomic orbital electron populations 1.22096 0.96039 1.01033 1.03113 1.21332 0.94790 0.82334 1.01851 1.48311 1.61168 1.13419 1.08120 1.19808 0.97394 0.93106 0.78670 1.21379 0.99818 1.28136 1.06855 0.92297 1.24826 0.95857 0.96324 0.96326 1.69925 1.25826 1.42005 1.15108 0.86569 0.82825 0.80242 0.78660 1.19765 1.20882 1.20817 1.16798 0.78951 0.82302 0.84176 1.90764 1.52460 1.67597 1.32491 1.22072 1.03089 0.94121 0.85003 1.22455 1.03445 0.92162 0.98939 1.19768 1.05873 0.95672 0.93138 1.20000 0.97767 0.87357 0.92883 1.20075 1.01419 0.90496 1.00436 1.20858 0.99168 0.96881 0.94325 1.20527 1.03900 0.98535 0.93757 1.19038 0.97120 0.91878 0.95822 1.20759 1.02156 1.02748 0.91235 1.84870 1.63920 1.22504 1.31081 0.92695 0.91291 0.92647 0.91295 0.90489 0.94173 0.92689 0.92763 0.82220 0.84688 0.85224 0.85904 0.91108 0.91573 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.20 37.16 0.38 -2.47 16 2 C 0.12 2.17 6.09 -4.04 -0.02 2.14 16 3 N -0.58 -12.57 2.49 -176.49 -0.44 -13.01 16 4 C 0.23 5.55 4.81 -5.19 -0.02 5.52 16 5 C -0.52 -13.77 8.40 -34.44 -0.29 -14.06 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.89 -24.44 13.28 55.43 0.74 -23.71 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.59 13.03 7.55 -12.72 -0.10 12.94 16 14 O -0.55 -12.48 16.54 5.23 0.09 -12.39 16 15 C 0.01 0.18 6.71 -36.91 -0.25 -0.07 16 16 C -0.15 -2.78 10.52 -37.23 -0.39 -3.17 16 17 C -0.14 -2.58 6.15 -105.19 -0.65 -3.23 16 18 C 0.07 1.40 7.41 -38.35 -0.28 1.11 16 19 C -0.11 -1.85 10.07 -39.45 -0.40 -2.25 16 20 C -0.09 -1.32 10.01 -39.52 -0.40 -1.71 16 21 C -0.15 -1.97 9.63 -39.95 -0.38 -2.36 16 22 C -0.04 -0.56 5.88 -104.66 -0.62 -1.18 16 23 C -0.11 -1.26 9.96 36.01 0.36 -0.90 16 24 O -0.13 -2.84 6.41 2.75 0.02 -2.83 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.18 7.64 -51.93 -0.40 0.78 16 29 H 0.08 1.27 7.78 -51.93 -0.40 0.87 16 30 H 0.04 1.00 7.78 -51.93 -0.40 0.60 16 31 H 0.06 1.42 5.36 -51.93 -0.28 1.14 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 34 H 0.14 2.36 8.06 -52.49 -0.42 1.93 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.60 8.08 -51.92 -0.42 0.18 16 39 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -29.66 333.89 -7.99 -37.65 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.24 Total: 1.19 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.16 Total: -7.92 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.30 Total: -36.71 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.10 Total: -15.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.66 -7.99 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.779 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds