Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47187 * 2 1 4 4 C 1.52992 * 109.46943 * 239.99290 * 2 1 3 5 5 C 1.53008 * 109.47051 * 175.00287 * 4 2 1 6 6 C 1.50700 * 109.47056 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99997 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99437 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00442 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99572 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46920 * 89.99992 * 10 8 6 12 12 H 1.48498 * 109.46862 * 209.99832 * 10 8 6 13 13 H 1.48493 * 109.47254 * 330.00447 * 10 8 6 14 14 N 1.46903 * 109.46732 * 119.99720 * 2 1 3 15 15 C 1.46905 * 110.99840 * 274.99741 * 14 2 1 16 16 C 1.50695 * 109.46993 * 180.02562 * 15 14 2 17 17 C 1.38247 * 119.98156 * 105.00161 * 16 15 14 18 18 C 1.38356 * 120.02541 * 179.97438 * 17 16 15 19 19 F 1.35102 * 120.00980 * 179.97438 * 18 17 16 20 20 C 1.38687 * 119.98201 * 359.97438 * 18 17 16 21 21 F 1.35101 * 120.02334 * 179.97438 * 20 18 17 22 22 C 1.38357 * 119.95572 * 359.97438 * 20 18 17 23 23 C 1.38429 * 119.97560 * 285.27259 * 16 15 14 24 24 F 1.35097 * 119.99285 * 0.02562 * 23 16 15 25 25 H 1.09000 * 109.46898 * 60.00338 * 1 2 3 26 26 H 1.08992 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47010 * 300.00519 * 1 2 3 28 28 H 1.09002 * 109.47510 * 295.00041 * 4 2 1 29 29 H 1.08997 * 109.47138 * 55.00473 * 4 2 1 30 30 H 1.09002 * 109.46762 * 300.00212 * 5 4 2 31 31 H 1.08997 * 109.46997 * 60.00100 * 5 4 2 32 32 H 0.97004 * 119.99716 * 179.97438 * 9 8 6 33 33 H 1.00893 * 111.00380 * 38.95268 * 14 2 1 34 34 H 1.08999 * 109.47337 * 60.00296 * 15 14 2 35 35 H 1.09006 * 109.46969 * 300.00342 * 15 14 2 36 36 H 1.07994 * 119.98337 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.01039 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3136 6 6 4.0671 -1.3235 -2.5443 7 1 3.3686 -1.8033 -3.2137 8 6 5.4183 -1.3596 -2.8160 9 7 6.2688 -0.7740 -2.0016 10 14 6.0410 -2.2404 -4.3412 11 1 6.0903 -1.2864 -5.4782 12 1 7.4026 -2.7740 -4.0834 13 1 5.1251 -3.3606 -4.6745 14 7 2.0196 -0.6925 1.1995 15 6 2.0824 0.2228 2.3469 16 6 2.5883 -0.5213 3.5558 17 6 3.8838 -0.3238 3.9964 18 6 4.3490 -1.0060 5.1065 19 9 5.6152 -0.8132 5.5364 20 6 3.5153 -1.8879 5.7777 21 9 3.9689 -2.5549 6.8615 22 6 2.2186 -2.0842 5.3368 23 6 1.7574 -1.4063 4.2210 24 9 0.4936 -1.6030 3.7861 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7516 -1.7717 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.8532 0.4368 -1.3573 31 1 3.9994 -1.0729 -0.4258 32 1 7.2195 -0.7998 -2.1927 33 1 1.4495 -1.4978 1.4102 34 1 1.0870 0.6165 2.5525 35 1 2.7588 1.0463 2.1182 36 1 4.5325 0.3639 3.4743 37 1 1.5688 -2.7710 5.8586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = -126.241314 kcal Electronic energy + Delta-G solvation = -22270.889862 eV Core-core repulsion = 18405.025884 eV Total energy + Delta-G solvation = -3865.863978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.67606 -49.25729 -48.73660 -39.20991 -37.13478 -33.59637 -32.42703 -30.82421 -29.89637 -28.67771 -25.47880 -24.73636 -23.65619 -21.89522 -21.32149 -19.87346 -18.52326 -18.05293 -17.44868 -16.67528 -16.15179 -15.96067 -15.79722 -15.31731 -15.12555 -15.00762 -14.76043 -14.46151 -14.32542 -14.27344 -13.42812 -13.04989 -12.88612 -12.52920 -12.33982 -12.22072 -11.94663 -11.72795 -11.55648 -11.28560 -11.14860 -10.83518 -10.44636 -10.26366 -9.66344 -9.37474 -9.23321 -8.91850 -8.79204 -8.24389 -7.99303 -5.89243 -3.90148 0.50495 0.60753 2.89285 3.37000 3.40703 3.43373 3.46732 3.75074 4.15072 4.15921 4.30597 4.53937 4.63222 4.72614 5.17406 5.25665 5.29556 5.38274 5.46633 5.52330 5.55109 5.60265 5.64381 5.74166 5.93919 6.05910 6.24669 6.35796 6.42852 6.62177 6.85589 7.24996 7.37607 7.65838 7.83754 8.06412 8.21432 8.56979 9.18636 9.72667 11.21863 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.014836 B = 0.004178 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.795384 B = 6700.744040 C = 8024.654013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.665 5.665 15 C 0.097 3.903 16 C -0.085 4.085 17 C -0.076 4.076 18 C 0.063 3.937 19 F -0.123 7.123 20 C 0.092 3.908 21 F -0.123 7.123 22 C -0.164 4.164 23 C 0.124 3.876 24 F -0.126 7.126 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.007 0.993 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.337 0.663 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.162 0.838 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 1.529 16.161 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.296 5.296 15 C -0.032 4.032 16 C -0.086 4.086 17 C -0.095 4.095 18 C 0.042 3.958 19 F -0.102 7.102 20 C 0.071 3.929 21 F -0.102 7.102 22 C -0.184 4.184 23 C 0.103 3.897 24 F -0.104 7.104 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.180 0.820 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.395 1.621 16.048 18.666 hybrid contribution -0.389 -0.627 -0.390 0.835 sum -9.784 0.994 15.658 18.490 Atomic orbital electron populations 1.22539 0.98381 1.01729 1.01373 1.21773 0.91101 0.98436 0.91176 0.90715 1.21636 1.00664 0.98443 0.92912 1.19003 0.88232 0.96493 0.97059 1.21346 0.91860 1.34095 1.08420 0.93112 1.24985 0.97128 0.95763 0.96480 1.69969 1.02172 1.44446 1.36901 0.86690 0.78152 0.80015 0.83689 1.20838 1.21329 1.20009 1.60638 1.58005 1.08724 1.02238 1.20888 0.99802 0.95191 0.87306 1.19853 0.93236 0.97775 0.97759 1.20947 0.95281 0.99461 0.93804 1.17633 0.80695 1.00370 0.97083 1.91560 1.35645 1.93928 1.89040 1.17219 0.92691 0.95627 0.87344 1.91552 1.89032 1.78376 1.51198 1.20857 0.95214 1.03846 0.98475 1.17130 0.80365 0.97801 0.94361 1.91532 1.36329 1.93719 1.88823 0.92078 0.92684 0.93662 0.93424 0.93338 0.97460 0.94943 0.93243 0.84433 0.93798 0.88923 0.82046 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.16 0.34 -1.98 16 2 C 0.08 1.33 2.59 -67.71 -0.18 1.16 16 3 H 0.07 1.20 7.80 -51.93 -0.40 0.79 16 4 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16 5 C 0.03 0.75 4.86 -27.88 -0.14 0.61 16 6 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 10 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 N -0.67 -10.10 5.69 -107.99 -0.61 -10.72 16 15 C 0.10 1.19 5.30 -4.98 -0.03 1.17 16 16 C -0.08 -0.99 5.43 -104.55 -0.57 -1.56 16 17 C -0.08 -0.88 9.64 -39.53 -0.38 -1.27 16 18 C 0.06 0.76 7.31 -39.37 -0.29 0.47 16 19 F -0.12 -1.63 17.18 2.25 0.04 -1.60 16 20 C 0.09 1.05 7.31 -39.37 -0.29 0.76 16 21 F -0.12 -1.47 17.18 2.25 0.04 -1.43 16 22 C -0.16 -1.65 10.00 -39.46 -0.39 -2.05 16 23 C 0.12 1.36 7.09 -39.43 -0.28 1.08 16 24 F -0.13 -1.41 16.32 2.25 0.04 -1.37 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.34 4.88 7.90 -39.30 -0.31 4.56 16 34 H 0.04 0.48 7.38 -51.93 -0.38 0.10 16 35 H 0.09 1.12 7.86 -51.93 -0.41 0.72 16 36 H 0.16 1.76 8.00 -52.49 -0.42 1.34 16 37 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -30.60 327.55 -7.38 -37.98 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.79 Total: -0.97 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.74 Total: -17.32 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.12 Total: -37.18 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.11 Total: -4.39 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.60 -7.38 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.262 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds