Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47187 * 2 1 4 4 C 1.52992 * 109.46943 * 239.99290 * 2 1 3 5 5 C 1.53008 * 109.47051 * 175.00287 * 4 2 1 6 6 C 1.50700 * 109.47056 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99997 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99437 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00442 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99572 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46920 * 89.99992 * 10 8 6 12 12 H 1.48498 * 109.46862 * 209.99832 * 10 8 6 13 13 H 1.48493 * 109.47254 * 330.00447 * 10 8 6 14 14 N 1.46903 * 109.46732 * 119.99720 * 2 1 3 15 15 C 1.46905 * 110.99840 * 274.99741 * 14 2 1 16 16 C 1.50695 * 109.46993 * 180.02562 * 15 14 2 17 17 C 1.38247 * 119.98156 * 105.00161 * 16 15 14 18 18 C 1.38356 * 120.02541 * 179.97438 * 17 16 15 19 19 F 1.35102 * 120.00980 * 179.97438 * 18 17 16 20 20 C 1.38687 * 119.98201 * 359.97438 * 18 17 16 21 21 F 1.35101 * 120.02334 * 179.97438 * 20 18 17 22 22 C 1.38357 * 119.95572 * 359.97438 * 20 18 17 23 23 C 1.38429 * 119.97560 * 285.27259 * 16 15 14 24 24 F 1.35097 * 119.99285 * 0.02562 * 23 16 15 25 25 H 1.09000 * 109.46898 * 60.00338 * 1 2 3 26 26 H 1.08992 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47010 * 300.00519 * 1 2 3 28 28 H 1.09002 * 109.47510 * 295.00041 * 4 2 1 29 29 H 1.08997 * 109.47138 * 55.00473 * 4 2 1 30 30 H 1.09002 * 109.46762 * 300.00212 * 5 4 2 31 31 H 1.08997 * 109.46997 * 60.00100 * 5 4 2 32 32 H 0.97004 * 119.99716 * 179.97438 * 9 8 6 33 33 H 1.00893 * 111.00380 * 38.95268 * 14 2 1 34 34 H 1.08999 * 109.47337 * 60.00296 * 15 14 2 35 35 H 1.09006 * 109.46969 * 300.00342 * 15 14 2 36 36 H 1.07994 * 119.98337 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.01039 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3136 6 6 4.0671 -1.3235 -2.5443 7 1 3.3686 -1.8033 -3.2137 8 6 5.4183 -1.3596 -2.8160 9 7 6.2688 -0.7740 -2.0016 10 14 6.0410 -2.2404 -4.3412 11 1 6.0903 -1.2864 -5.4782 12 1 7.4026 -2.7740 -4.0834 13 1 5.1251 -3.3606 -4.6745 14 7 2.0196 -0.6925 1.1995 15 6 2.0824 0.2228 2.3469 16 6 2.5883 -0.5213 3.5558 17 6 3.8838 -0.3238 3.9964 18 6 4.3490 -1.0060 5.1065 19 9 5.6152 -0.8132 5.5364 20 6 3.5153 -1.8879 5.7777 21 9 3.9689 -2.5549 6.8615 22 6 2.2186 -2.0842 5.3368 23 6 1.7574 -1.4063 4.2210 24 9 0.4936 -1.6030 3.7861 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7516 -1.7717 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.8532 0.4368 -1.3573 31 1 3.9994 -1.0729 -0.4258 32 1 7.2195 -0.7998 -2.1927 33 1 1.4495 -1.4978 1.4102 34 1 1.0870 0.6165 2.5525 35 1 2.7588 1.0463 2.1182 36 1 4.5325 0.3639 3.4743 37 1 1.5688 -2.7710 5.8586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = -143.274262 kcal Electronic energy + Delta-G solvation = -22271.628466 eV Core-core repulsion = 18405.025884 eV Total energy + Delta-G solvation = -3866.602582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.63011 -50.13459 -49.70487 -40.14489 -38.37608 -35.39384 -33.91316 -31.97322 -31.26837 -29.89644 -27.02793 -26.10542 -24.54850 -23.23074 -22.70422 -21.36726 -19.43022 -18.97701 -18.45680 -18.29314 -17.61438 -16.95858 -16.77652 -16.51738 -16.33654 -16.09601 -16.07848 -15.68447 -15.38125 -15.25796 -14.66028 -14.46008 -14.23180 -13.82439 -13.73393 -13.44716 -13.14975 -12.91095 -12.87932 -12.80735 -12.61489 -12.34239 -12.24184 -11.77469 -11.49540 -11.18830 -10.94462 -10.45946 -10.26204 -9.73295 -9.15724 -8.11847 -6.21330 -0.41862 -0.26816 1.41081 1.42231 1.52990 1.98306 2.45218 2.51121 2.84938 3.19446 3.21043 3.26895 3.38980 3.56784 3.85374 4.07267 4.25762 4.33731 4.38098 4.49559 4.54324 4.64641 4.68475 4.81651 4.82238 4.98668 5.01386 5.10750 5.13477 5.32422 5.49721 5.52842 5.62120 5.91431 6.05908 6.20836 6.37915 6.53508 6.98805 7.46645 8.99184 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.014836 B = 0.004178 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.795384 B = 6700.744040 C = 8024.654013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.070 0.930 4 C -0.089 4.089 5 C 0.038 3.962 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 N -0.687 5.687 15 C 0.100 3.900 16 C -0.090 4.090 17 C -0.080 4.080 18 C 0.049 3.951 19 F -0.134 7.134 20 C 0.089 3.911 21 F -0.126 7.126 22 C -0.150 4.150 23 C 0.126 3.874 24 F -0.123 7.123 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.051 0.949 30 H -0.020 1.020 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.341 0.659 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.163 0.837 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.804 0.921 16.069 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.088 0.912 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 N -0.319 5.319 15 C -0.028 4.028 16 C -0.091 4.091 17 C -0.100 4.100 18 C 0.029 3.971 19 F -0.112 7.112 20 C 0.069 3.931 21 F -0.105 7.105 22 C -0.169 4.169 23 C 0.106 3.894 24 F -0.102 7.102 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.069 0.931 30 H -0.001 1.001 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.180 0.820 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.955 1.015 15.960 19.384 hybrid contribution 0.101 -0.435 -0.333 0.557 sum -10.854 0.580 15.627 19.035 Atomic orbital electron populations 1.22396 0.95397 1.02420 1.02655 1.21543 0.93316 0.97306 0.89614 0.91197 1.21464 0.96598 0.99012 0.95624 1.18836 0.92121 0.94010 0.94944 1.21831 0.92430 1.34333 1.09456 0.92810 1.25893 0.97445 0.96517 0.99797 1.70105 1.02510 1.45723 1.38882 0.85576 0.77544 0.79035 0.79659 1.19835 1.20973 1.18962 1.60508 1.58626 1.09653 1.03075 1.20872 1.00839 0.94617 0.86470 1.19826 0.93304 0.98251 0.97758 1.20978 0.95509 0.99647 0.93839 1.17795 0.80540 1.01156 0.97630 1.91528 1.36406 1.94104 1.89204 1.17303 0.93105 0.95486 0.87256 1.91545 1.89162 1.78409 1.51348 1.21051 0.94743 1.03350 0.97792 1.17130 0.80292 0.97550 0.94440 1.91540 1.36138 1.93669 1.88830 0.91505 0.92270 0.91669 0.93691 0.93065 1.00138 0.97604 0.93106 0.83987 0.91808 0.89291 0.81992 0.79827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 9.16 71.98 0.66 -3.26 16 2 C 0.09 2.81 2.59 44.91 0.12 2.92 16 3 H 0.07 2.20 7.80 -2.39 -0.02 2.18 16 4 C -0.09 -3.56 4.83 30.59 0.15 -3.41 16 5 C 0.04 2.01 4.86 29.85 0.15 2.15 16 6 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 7 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 10 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 N -0.69 -20.35 5.69 -495.57 -2.82 -23.17 16 15 C 0.10 2.36 5.30 85.55 0.45 2.81 16 16 C -0.09 -2.02 5.43 -19.82 -0.11 -2.13 16 17 C -0.08 -1.88 9.64 22.30 0.22 -1.67 16 18 C 0.05 1.19 7.31 22.41 0.16 1.35 16 19 F -0.13 -3.61 17.18 44.97 0.77 -2.84 16 20 C 0.09 1.94 7.31 22.41 0.16 2.10 16 21 F -0.13 -2.88 17.18 44.97 0.77 -2.10 16 22 C -0.15 -2.70 10.00 22.35 0.22 -2.48 16 23 C 0.13 2.55 7.09 22.37 0.16 2.70 16 24 F -0.12 -2.46 16.32 44.97 0.73 -1.72 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 31 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.34 9.42 7.90 -89.70 -0.71 8.71 16 34 H 0.06 1.26 7.38 -2.39 -0.02 1.24 16 35 H 0.09 2.14 7.86 -2.38 -0.02 2.12 16 36 H 0.16 3.67 8.00 -2.91 -0.02 3.64 16 37 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -65.77 327.55 5.19 -60.58 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.38 Total: 9.02 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.03 Total: -29.56 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.54 Total: -80.51 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 2.28 Total: -6.66 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.77 5.19 -60.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.694 kcal (2) G-P(sol) polarization free energy of solvation -65.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds