Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46988 * 2 1 4 4 C 1.52998 * 109.46937 * 119.99599 * 2 1 3 5 5 C 1.52998 * 109.47040 * 185.00055 * 4 2 1 6 6 C 1.50702 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00438 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99984 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00256 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47367 * 59.99328 * 10 8 6 12 12 H 1.48497 * 109.47439 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46984 * 299.99575 * 10 8 6 14 14 N 1.46898 * 109.47235 * 239.99497 * 2 1 3 15 15 C 1.46899 * 111.00358 * 85.00044 * 14 2 1 16 16 C 1.50693 * 109.47319 * 180.02562 * 15 14 2 17 17 C 1.38243 * 119.97392 * 259.97947 * 16 15 14 18 18 C 1.38360 * 120.02442 * 180.02562 * 17 16 15 19 19 F 1.35103 * 120.01186 * 179.97438 * 18 17 16 20 20 C 1.38694 * 119.97966 * 359.97078 * 18 17 16 21 21 F 1.35096 * 120.01984 * 180.02562 * 20 18 17 22 22 C 1.38349 * 119.95251 * 359.75272 * 20 18 17 23 23 C 1.38416 * 119.98113 * 79.99689 * 16 15 14 24 24 F 1.35104 * 119.99018 * 0.02562 * 23 16 15 25 25 H 1.08999 * 109.47092 * 60.00563 * 1 2 3 26 26 H 1.09005 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47344 * 300.00395 * 1 2 3 28 28 H 1.09000 * 109.47297 * 304.99889 * 4 2 1 29 29 H 1.08994 * 109.47634 * 64.99730 * 4 2 1 30 30 H 1.08991 * 109.47343 * 299.99612 * 5 4 2 31 31 H 1.09001 * 109.47174 * 59.99805 * 5 4 2 32 32 H 0.96999 * 119.99773 * 180.02562 * 9 8 6 33 33 H 1.00903 * 110.99811 * 321.04385 * 14 2 1 34 34 H 1.08998 * 109.46782 * 59.99369 * 15 14 2 35 35 H 1.09004 * 109.46602 * 300.00173 * 15 14 2 36 36 H 1.08000 * 119.98943 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.01107 * 180.27650 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3138 6 6 4.0670 -1.3230 2.5446 7 1 3.3685 -1.8027 3.2142 8 6 5.4182 -1.3590 2.8166 9 7 6.2688 -0.7744 2.0015 10 14 6.0409 -2.2394 4.3418 11 1 5.6485 -3.6705 4.2823 12 1 7.5208 -2.1346 4.4045 13 1 5.4482 -1.6136 5.5512 14 7 2.0197 -0.6926 -1.1993 15 6 2.0825 0.2223 -2.3469 16 6 2.5874 -0.5222 -3.5559 17 6 3.9113 -0.4049 -3.9361 18 6 4.3758 -1.0876 -5.0463 19 9 5.6696 -0.9724 -5.4180 20 6 3.5129 -1.8903 -5.7775 21 9 3.9658 -2.5577 -6.8613 22 6 2.1895 -2.0116 -5.3928 23 6 1.7252 -1.3227 -4.2851 24 9 0.4313 -1.4358 -3.9131 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2058 30 1 3.9994 -1.0728 0.4262 31 1 3.8531 0.4371 1.3573 32 1 7.2195 -0.8001 2.1926 33 1 1.4496 -1.4981 -1.4098 34 1 2.7588 1.0460 -2.1182 35 1 1.0871 0.6160 -2.5526 36 1 4.5831 0.2205 -3.3669 37 1 1.5179 -2.6399 -5.9589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -126.092959 kcal Electronic energy + Delta-G solvation = -22263.528535 eV Core-core repulsion = 18397.670990 eV Total energy + Delta-G solvation = -3865.857545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.67243 -49.25788 -48.73092 -39.20908 -37.13420 -33.59558 -32.42539 -30.81243 -29.90173 -28.67998 -25.48143 -24.73968 -23.63956 -21.88835 -21.32059 -19.87474 -18.52158 -18.06166 -17.44396 -16.67211 -16.14934 -15.95620 -15.79592 -15.31544 -15.12255 -15.00061 -14.77854 -14.45236 -14.32739 -14.26472 -13.41885 -13.03206 -12.89067 -12.52315 -12.33986 -12.23715 -11.92381 -11.73788 -11.55342 -11.28839 -11.14603 -10.81818 -10.47082 -10.26169 -9.66065 -9.36780 -9.23313 -8.93088 -8.79322 -8.24113 -7.99549 -5.89132 -3.90104 0.50373 0.61143 2.89549 3.38517 3.40790 3.42961 3.45338 3.75242 4.15964 4.16631 4.29782 4.53945 4.63380 4.73135 5.17905 5.25715 5.29379 5.38581 5.46616 5.52589 5.55734 5.61525 5.64478 5.75261 5.93694 6.06277 6.24584 6.35735 6.43262 6.62079 6.85458 7.24915 7.37498 7.65612 7.83463 8.06323 8.21404 8.56901 9.18448 9.72620 11.21953 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.004193 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.661475 B = 6676.572696 C = 8054.594147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.665 5.665 15 C 0.097 3.903 16 C -0.086 4.086 17 C -0.074 4.074 18 C 0.062 3.938 19 F -0.123 7.123 20 C 0.092 3.908 21 F -0.123 7.123 22 C -0.165 4.165 23 C 0.123 3.877 24 F -0.126 7.126 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.007 0.993 32 H 0.259 0.741 33 H 0.337 0.663 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.163 0.837 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 1.524 -16.143 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.295 5.295 15 C -0.032 4.032 16 C -0.087 4.087 17 C -0.093 4.093 18 C 0.042 3.958 19 F -0.101 7.101 20 C 0.071 3.929 21 F -0.102 7.102 22 C -0.184 4.184 23 C 0.103 3.897 24 F -0.104 7.104 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.155 0.845 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.180 0.820 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.333 1.623 -16.030 18.619 hybrid contribution -0.409 -0.640 0.387 0.852 sum -9.741 0.984 -15.643 18.454 Atomic orbital electron populations 1.22540 0.98381 1.01723 1.01382 1.21772 0.91102 0.98437 0.91174 0.90719 1.21635 1.00665 0.98440 0.92912 1.18995 0.88228 0.96485 0.97042 1.21309 0.91851 1.34181 1.08454 0.93171 1.24984 0.97120 0.95743 0.96488 1.69959 1.02212 1.44373 1.36957 0.86750 0.77594 0.80315 0.83840 1.20378 1.21392 1.20414 1.60634 1.57973 1.08706 1.02223 1.20882 0.99831 0.95156 0.87318 1.19841 0.92786 0.98563 0.97529 1.20967 0.95411 0.98835 0.94075 1.17648 0.79489 1.01459 0.97197 1.91562 1.33054 1.94678 1.90855 1.17223 0.92211 0.96342 0.87090 1.91550 1.89206 1.78192 1.51212 1.20849 0.94799 1.03779 0.99008 1.17137 0.79245 0.98510 0.94850 1.91536 1.33586 1.94500 1.90813 0.93646 0.92691 0.92087 0.93344 0.93427 0.94950 0.97463 0.93182 0.84474 0.88926 0.93840 0.81975 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.16 0.34 -1.98 16 2 C 0.08 1.33 2.59 -67.72 -0.18 1.15 16 3 H 0.07 1.20 7.80 -51.93 -0.41 0.79 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 6 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 10 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 N -0.66 -10.04 5.69 -108.00 -0.61 -10.65 16 15 C 0.10 1.19 5.33 -4.98 -0.03 1.16 16 16 C -0.09 -1.00 5.40 -104.56 -0.56 -1.56 16 17 C -0.07 -0.87 9.64 -39.53 -0.38 -1.25 16 18 C 0.06 0.76 7.31 -39.37 -0.29 0.48 16 19 F -0.12 -1.65 17.18 2.25 0.04 -1.61 16 20 C 0.09 1.05 7.31 -39.37 -0.29 0.76 16 21 F -0.12 -1.47 17.18 2.25 0.04 -1.43 16 22 C -0.16 -1.65 10.00 -39.46 -0.39 -2.04 16 23 C 0.12 1.34 7.24 -39.43 -0.29 1.06 16 24 F -0.13 -1.40 16.66 2.25 0.04 -1.36 16 25 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 26 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.34 4.83 8.46 -39.29 -0.33 4.50 16 34 H 0.09 1.13 7.92 -51.93 -0.41 0.71 16 35 H 0.04 0.48 7.23 -51.93 -0.38 0.11 16 36 H 0.16 1.83 8.04 -52.49 -0.42 1.41 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -30.47 328.54 -7.38 -37.86 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.81 Total: -0.95 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.74 Total: -17.31 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.12 Total: -37.09 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.11 Total: -4.40 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.47 -7.38 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.237 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds