Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46988 * 2 1 4 4 C 1.52998 * 109.46937 * 119.99599 * 2 1 3 5 5 C 1.52998 * 109.47040 * 185.00055 * 4 2 1 6 6 C 1.50702 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00438 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99984 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00256 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47367 * 59.99328 * 10 8 6 12 12 H 1.48497 * 109.47439 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46984 * 299.99575 * 10 8 6 14 14 N 1.46898 * 109.47235 * 239.99497 * 2 1 3 15 15 C 1.46899 * 111.00358 * 85.00044 * 14 2 1 16 16 C 1.50693 * 109.47319 * 180.02562 * 15 14 2 17 17 C 1.38243 * 119.97392 * 259.97947 * 16 15 14 18 18 C 1.38360 * 120.02442 * 180.02562 * 17 16 15 19 19 F 1.35103 * 120.01186 * 179.97438 * 18 17 16 20 20 C 1.38694 * 119.97966 * 359.97078 * 18 17 16 21 21 F 1.35096 * 120.01984 * 180.02562 * 20 18 17 22 22 C 1.38349 * 119.95251 * 359.75272 * 20 18 17 23 23 C 1.38416 * 119.98113 * 79.99689 * 16 15 14 24 24 F 1.35104 * 119.99018 * 0.02562 * 23 16 15 25 25 H 1.08999 * 109.47092 * 60.00563 * 1 2 3 26 26 H 1.09005 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47344 * 300.00395 * 1 2 3 28 28 H 1.09000 * 109.47297 * 304.99889 * 4 2 1 29 29 H 1.08994 * 109.47634 * 64.99730 * 4 2 1 30 30 H 1.08991 * 109.47343 * 299.99612 * 5 4 2 31 31 H 1.09001 * 109.47174 * 59.99805 * 5 4 2 32 32 H 0.96999 * 119.99773 * 180.02562 * 9 8 6 33 33 H 1.00903 * 110.99811 * 321.04385 * 14 2 1 34 34 H 1.08998 * 109.46782 * 59.99369 * 15 14 2 35 35 H 1.09004 * 109.46602 * 300.00173 * 15 14 2 36 36 H 1.08000 * 119.98943 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.01107 * 180.27650 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3138 6 6 4.0670 -1.3230 2.5446 7 1 3.3685 -1.8027 3.2142 8 6 5.4182 -1.3590 2.8166 9 7 6.2688 -0.7744 2.0015 10 14 6.0409 -2.2394 4.3418 11 1 5.6485 -3.6705 4.2823 12 1 7.5208 -2.1346 4.4045 13 1 5.4482 -1.6136 5.5512 14 7 2.0197 -0.6926 -1.1993 15 6 2.0825 0.2223 -2.3469 16 6 2.5874 -0.5222 -3.5559 17 6 3.9113 -0.4049 -3.9361 18 6 4.3758 -1.0876 -5.0463 19 9 5.6696 -0.9724 -5.4180 20 6 3.5129 -1.8903 -5.7775 21 9 3.9658 -2.5577 -6.8613 22 6 2.1895 -2.0116 -5.3928 23 6 1.7252 -1.3227 -4.2851 24 9 0.4313 -1.4358 -3.9131 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2058 30 1 3.9994 -1.0728 0.4262 31 1 3.8531 0.4371 1.3573 32 1 7.2195 -0.8001 2.1926 33 1 1.4496 -1.4981 -1.4098 34 1 2.7588 1.0460 -2.1182 35 1 1.0871 0.6160 -2.5526 36 1 4.5831 0.2205 -3.3669 37 1 1.5179 -2.6399 -5.9589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -143.032396 kcal Electronic energy + Delta-G solvation = -22264.263084 eV Core-core repulsion = 18397.670990 eV Total energy + Delta-G solvation = -3866.592094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.63098 -50.13181 -49.70550 -40.14770 -38.37461 -35.39127 -33.91190 -31.96545 -31.27094 -29.90007 -27.02564 -26.11211 -24.53613 -23.22844 -22.69925 -21.36803 -19.42995 -18.98631 -18.45742 -18.28820 -17.61419 -16.95379 -16.77156 -16.51969 -16.33936 -16.09838 -16.07807 -15.69789 -15.37074 -15.25382 -14.65378 -14.44783 -14.23386 -13.81311 -13.74492 -13.43633 -13.16215 -12.89276 -12.88673 -12.79724 -12.61233 -12.35443 -12.24910 -11.76837 -11.49462 -11.18730 -10.95080 -10.45235 -10.26002 -9.73505 -9.15982 -8.11517 -6.21054 -0.42180 -0.26810 1.41245 1.43926 1.51534 1.98241 2.45453 2.50874 2.84933 3.20178 3.21311 3.26989 3.37495 3.57497 3.85203 4.07445 4.25668 4.33925 4.38068 4.49545 4.54386 4.64895 4.69072 4.81805 4.82450 4.98407 5.01899 5.10685 5.13699 5.32491 5.49857 5.52857 5.62115 5.91568 6.06096 6.20851 6.38044 6.53805 6.98900 7.46823 8.99322 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.004193 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.661475 B = 6676.572696 C = 8054.594147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.069 0.931 4 C -0.089 4.089 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.686 5.686 15 C 0.101 3.899 16 C -0.090 4.090 17 C -0.079 4.079 18 C 0.048 3.952 19 F -0.134 7.134 20 C 0.090 3.910 21 F -0.126 7.126 22 C -0.150 4.150 23 C 0.127 3.873 24 F -0.123 7.123 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.006 0.994 31 H -0.020 1.020 32 H 0.260 0.740 33 H 0.342 0.658 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.160 0.840 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.836 0.894 -16.105 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.088 0.912 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.192 1.192 14 N -0.318 5.318 15 C -0.028 4.028 16 C -0.092 4.092 17 C -0.099 4.099 18 C 0.028 3.972 19 F -0.113 7.113 20 C 0.069 3.931 21 F -0.104 7.104 22 C -0.169 4.169 23 C 0.107 3.893 24 F -0.101 7.101 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.024 0.976 31 H -0.002 1.002 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.178 0.822 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.983 0.993 -15.995 19.428 hybrid contribution 0.105 -0.439 0.346 0.569 sum -10.877 0.554 -15.649 19.066 Atomic orbital electron populations 1.22397 0.95398 1.02433 1.02639 1.21540 0.93312 0.97291 0.89625 0.91244 1.21462 0.96593 0.99026 0.95604 1.18829 0.92121 0.93994 0.94942 1.21804 0.92431 1.34406 1.09498 0.92809 1.25894 0.97439 0.96496 0.99808 1.70099 1.02512 1.45668 1.38928 0.85636 0.77000 0.79285 0.79917 1.19467 1.21000 1.19244 1.60502 1.58599 1.09625 1.03029 1.20858 1.00815 0.94583 0.86510 1.19803 0.92785 0.99022 0.97558 1.20969 0.95686 0.99062 0.94148 1.17809 0.79281 1.02303 0.97786 1.91528 1.33895 1.94856 1.91009 1.17297 0.92626 0.96193 0.86948 1.91544 1.89340 1.78225 1.51340 1.21048 0.94373 1.03068 0.98407 1.17117 0.79164 0.98199 0.94855 1.91545 1.33347 1.94445 1.90811 0.91681 0.92236 0.91536 0.93098 0.93655 0.97587 1.00163 0.93101 0.83984 0.89358 0.91895 0.82231 0.79770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.16 71.98 0.66 -3.25 16 2 C 0.09 2.80 2.59 44.91 0.12 2.92 16 3 H 0.07 2.19 7.80 -2.39 -0.02 2.17 16 4 C -0.09 -3.54 4.83 30.59 0.15 -3.40 16 5 C 0.04 2.02 4.86 29.85 0.15 2.16 16 6 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 10 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 N -0.69 -20.23 5.69 -495.60 -2.82 -23.05 16 15 C 0.10 2.37 5.33 85.56 0.46 2.83 16 16 C -0.09 -2.03 5.40 -19.82 -0.11 -2.13 16 17 C -0.08 -1.89 9.64 22.30 0.22 -1.68 16 18 C 0.05 1.19 7.31 22.41 0.16 1.35 16 19 F -0.13 -3.68 17.18 44.97 0.77 -2.91 16 20 C 0.09 1.95 7.31 22.41 0.16 2.12 16 21 F -0.13 -2.87 17.18 44.97 0.77 -2.09 16 22 C -0.15 -2.66 10.00 22.35 0.22 -2.44 16 23 C 0.13 2.53 7.24 22.37 0.16 2.69 16 24 F -0.12 -2.41 16.66 44.97 0.75 -1.66 16 25 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 26 H 0.06 1.33 8.13 -2.38 -0.02 1.31 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.01 0.33 7.75 -2.39 -0.02 0.31 16 31 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.34 9.33 8.46 -89.69 -0.76 8.58 16 34 H 0.09 2.14 7.92 -2.39 -0.02 2.12 16 35 H 0.06 1.25 7.23 -2.38 -0.02 1.23 16 36 H 0.16 3.79 8.04 -2.91 -0.02 3.76 16 37 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -65.57 328.54 5.16 -60.41 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.33 Total: 9.02 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.04 Total: -29.50 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -2.54 Total: -80.36 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 2.29 Total: -6.66 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.57 5.16 -60.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.627 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds