Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47290 * 2 1 4 4 C 1.53002 * 109.46910 * 239.99799 * 2 1 3 5 5 C 1.53006 * 109.46631 * 175.00339 * 4 2 1 6 6 C 1.50704 * 109.46553 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00346 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99389 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99309 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00309 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47358 * 89.99812 * 10 8 6 12 12 H 1.48502 * 109.47244 * 209.99894 * 10 8 6 13 13 H 1.48501 * 109.47049 * 329.99760 * 10 8 6 14 14 N 1.46900 * 109.47005 * 120.00035 * 2 1 3 15 15 C 1.46901 * 110.99924 * 275.00139 * 14 2 1 16 16 C 1.50702 * 109.46819 * 180.02562 * 15 14 2 17 17 C 1.38461 * 120.01389 * 90.00393 * 16 15 14 18 18 F 1.35104 * 119.98788 * 359.97438 * 17 16 15 19 19 C 1.38416 * 120.02140 * 179.72493 * 17 16 15 20 20 C 1.38243 * 120.04529 * 0.24489 * 19 17 16 21 21 C 1.38368 * 120.02204 * 0.02562 * 20 19 17 22 22 F 1.35102 * 120.00878 * 180.02562 * 21 20 19 23 23 C 1.38348 * 120.01100 * 270.25036 * 16 15 14 24 24 F 1.35104 * 120.02467 * 0.02562 * 23 16 15 25 25 H 1.08998 * 109.47023 * 300.00470 * 1 2 3 26 26 H 1.08998 * 109.46857 * 59.99977 * 1 2 3 27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47343 * 295.00065 * 4 2 1 29 29 H 1.08996 * 109.47231 * 55.00279 * 4 2 1 30 30 H 1.08995 * 109.47193 * 299.99600 * 5 4 2 31 31 H 1.08996 * 109.47362 * 60.00020 * 5 4 2 32 32 H 0.97008 * 119.99655 * 180.02562 * 9 8 6 33 33 H 1.00902 * 111.00420 * 151.04087 * 14 2 1 34 34 H 1.09000 * 109.47084 * 59.99822 * 15 14 2 35 35 H 1.09001 * 109.46701 * 299.99558 * 15 14 2 36 36 H 1.07998 * 119.98024 * 180.26901 * 19 17 16 37 37 H 1.08001 * 119.98943 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0671 -1.3233 -2.5444 7 1 3.3687 -1.8038 -3.2135 8 6 5.4184 -1.3594 -2.8162 9 7 5.8567 -1.9794 -3.8901 10 14 6.6265 -0.5290 -1.6586 11 1 7.0621 -1.4970 -0.6200 12 1 7.8083 -0.0628 -2.4275 13 1 5.9696 0.6330 -1.0078 14 7 2.0197 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 6 2.5885 -0.5216 3.5557 17 6 3.9469 -0.5736 3.8185 18 9 4.8189 0.0426 2.9907 19 6 4.4114 -1.2522 4.9318 20 6 3.5202 -1.8830 5.7797 21 6 2.1627 -1.8370 5.5158 22 9 1.2919 -2.4531 6.3449 23 6 1.6962 -1.1574 4.4005 24 9 0.3709 -1.1120 4.1420 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 3.8533 0.4368 -1.3573 31 1 3.9995 -1.0729 -0.4259 32 1 6.8075 -2.0051 -4.0811 33 1 2.9173 -1.1206 1.0288 34 1 1.0870 0.6163 2.5525 35 1 2.7589 1.0461 2.1182 36 1 5.4708 -1.2886 5.1386 37 1 3.8836 -2.4119 6.6484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -122.604145 kcal Electronic energy + Delta-G solvation = -22746.074988 eV Core-core repulsion = 18880.368729 eV Total energy + Delta-G solvation = -3865.706259 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.70286 -49.21760 -48.77375 -39.17883 -37.32205 -33.78303 -32.53613 -30.57007 -30.18925 -29.24723 -25.95500 -24.92383 -23.21970 -22.08113 -21.11191 -19.71399 -18.49289 -18.18083 -17.60851 -16.79629 -16.72886 -16.12742 -15.74311 -15.45465 -15.23309 -15.04764 -14.76231 -14.64299 -14.35257 -14.04595 -13.35408 -13.10700 -12.87059 -12.80723 -12.48137 -12.30384 -12.03747 -11.91692 -11.68677 -11.50889 -11.21924 -10.94848 -10.57725 -9.99379 -9.79377 -9.51708 -9.32047 -9.19284 -8.90237 -8.55681 -8.25354 -6.05521 -4.03428 0.45288 0.49924 2.81642 3.28755 3.35850 3.36388 3.39824 3.71487 4.05477 4.12233 4.27440 4.43506 4.46796 4.63069 5.02523 5.25709 5.28023 5.33783 5.42427 5.49750 5.53901 5.57013 5.64016 5.73338 5.77499 6.06404 6.21081 6.33173 6.36038 6.41543 6.69637 6.81815 7.16575 7.24817 7.44389 7.59624 7.77954 8.52984 9.00008 9.57039 11.07975 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.004896 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.993113 B = 5717.052642 C = 6788.779946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 H 0.041 0.959 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.877 3.123 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.680 5.680 15 C 0.096 3.904 16 C -0.124 4.124 17 C 0.128 3.872 18 F -0.120 7.120 19 C -0.136 4.136 20 C -0.098 4.098 21 C 0.053 3.947 22 F -0.126 7.126 23 C 0.120 3.880 24 F -0.113 7.113 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.013 0.987 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.351 0.649 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.154 0.846 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 3.702 21.203 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.705 3.295 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.314 5.314 15 C -0.033 4.033 16 C -0.127 4.127 17 C 0.107 3.893 18 F -0.098 7.098 19 C -0.155 4.155 20 C -0.117 4.117 21 C 0.033 3.967 22 F -0.104 7.104 23 C 0.099 3.901 24 F -0.091 7.091 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.173 0.827 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.172 0.828 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.677 3.421 21.228 22.515 hybrid contribution 1.365 0.851 0.262 1.630 sum -5.312 4.273 21.490 22.545 Atomic orbital electron populations 1.21783 0.95134 1.02104 1.00429 1.21692 0.95079 0.96106 0.89974 0.94092 1.21671 0.98080 1.00171 0.94469 1.19612 0.91889 0.96595 0.97137 1.21117 0.92936 1.34256 1.07342 0.90952 1.25033 0.98403 0.94907 0.95066 1.69919 1.14594 1.43402 1.26269 0.86816 0.80909 0.80564 0.81245 1.20215 1.21364 1.19113 1.60686 1.34615 1.31997 1.04138 1.20792 1.01442 0.93395 0.87685 1.19824 0.91501 1.02327 0.99005 1.17302 0.86052 0.95827 0.90092 1.91601 1.67861 1.80067 1.70297 1.21056 1.01767 0.98863 0.93773 1.20876 0.89817 1.00008 1.00978 1.17626 0.88254 1.00010 0.90855 1.91544 1.68547 1.80513 1.69822 1.17055 0.78810 0.99782 0.94444 1.91567 1.29618 1.94335 1.93563 0.93658 0.92662 0.92091 0.91759 0.91818 0.96897 0.97408 0.92752 0.82719 0.89240 0.93061 0.82846 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.41 37.16 0.35 -1.56 16 2 C 0.08 1.31 2.65 -67.71 -0.18 1.13 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.26 16 4 C -0.11 -2.08 4.74 -26.73 -0.13 -2.21 16 5 C -0.01 -0.35 3.87 -27.88 -0.11 -0.46 16 6 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 10 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 14 N -0.68 -10.83 6.30 -107.99 -0.68 -11.51 16 15 C 0.10 1.30 5.25 -4.97 -0.03 1.27 16 16 C -0.12 -1.56 5.40 -104.50 -0.56 -2.12 16 17 C 0.13 1.52 7.24 -39.43 -0.29 1.23 16 18 F -0.12 -1.67 16.47 2.25 0.04 -1.64 16 19 C -0.14 -1.21 10.02 -39.51 -0.40 -1.61 16 20 C -0.10 -0.81 10.02 -39.53 -0.40 -1.20 16 21 C 0.05 0.57 7.31 -39.37 -0.29 0.28 16 22 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 23 C 0.12 1.47 7.25 -39.38 -0.29 1.19 16 24 F -0.11 -1.51 16.40 2.25 0.04 -1.47 16 25 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 31 H 0.01 0.18 5.85 -51.93 -0.30 -0.12 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.35 6.15 6.46 -39.29 -0.25 5.90 16 34 H 0.09 1.13 6.94 -51.93 -0.36 0.77 16 35 H 0.05 0.70 7.55 -51.93 -0.39 0.30 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -30.93 321.07 -6.96 -37.88 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.60 Total: 0.65 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.74 Total: -17.35 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.09 Total: -38.71 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.93 -6.96 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.720 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds