Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47290 * 2 1 4 4 C 1.53002 * 109.46910 * 239.99799 * 2 1 3 5 5 C 1.53006 * 109.46631 * 175.00339 * 4 2 1 6 6 C 1.50704 * 109.46553 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00346 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99389 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99309 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00309 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47358 * 89.99812 * 10 8 6 12 12 H 1.48502 * 109.47244 * 209.99894 * 10 8 6 13 13 H 1.48501 * 109.47049 * 329.99760 * 10 8 6 14 14 N 1.46900 * 109.47005 * 120.00035 * 2 1 3 15 15 C 1.46901 * 110.99924 * 275.00139 * 14 2 1 16 16 C 1.50702 * 109.46819 * 180.02562 * 15 14 2 17 17 C 1.38461 * 120.01389 * 90.00393 * 16 15 14 18 18 F 1.35104 * 119.98788 * 359.97438 * 17 16 15 19 19 C 1.38416 * 120.02140 * 179.72493 * 17 16 15 20 20 C 1.38243 * 120.04529 * 0.24489 * 19 17 16 21 21 C 1.38368 * 120.02204 * 0.02562 * 20 19 17 22 22 F 1.35102 * 120.00878 * 180.02562 * 21 20 19 23 23 C 1.38348 * 120.01100 * 270.25036 * 16 15 14 24 24 F 1.35104 * 120.02467 * 0.02562 * 23 16 15 25 25 H 1.08998 * 109.47023 * 300.00470 * 1 2 3 26 26 H 1.08998 * 109.46857 * 59.99977 * 1 2 3 27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47343 * 295.00065 * 4 2 1 29 29 H 1.08996 * 109.47231 * 55.00279 * 4 2 1 30 30 H 1.08995 * 109.47193 * 299.99600 * 5 4 2 31 31 H 1.08996 * 109.47362 * 60.00020 * 5 4 2 32 32 H 0.97008 * 119.99655 * 180.02562 * 9 8 6 33 33 H 1.00902 * 111.00420 * 151.04087 * 14 2 1 34 34 H 1.09000 * 109.47084 * 59.99822 * 15 14 2 35 35 H 1.09001 * 109.46701 * 299.99558 * 15 14 2 36 36 H 1.07998 * 119.98024 * 180.26901 * 19 17 16 37 37 H 1.08001 * 119.98943 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0671 -1.3233 -2.5444 7 1 3.3687 -1.8038 -3.2135 8 6 5.4184 -1.3594 -2.8162 9 7 5.8567 -1.9794 -3.8901 10 14 6.6265 -0.5290 -1.6586 11 1 7.0621 -1.4970 -0.6200 12 1 7.8083 -0.0628 -2.4275 13 1 5.9696 0.6330 -1.0078 14 7 2.0197 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 6 2.5885 -0.5216 3.5557 17 6 3.9469 -0.5736 3.8185 18 9 4.8189 0.0426 2.9907 19 6 4.4114 -1.2522 4.9318 20 6 3.5202 -1.8830 5.7797 21 6 2.1627 -1.8370 5.5158 22 9 1.2919 -2.4531 6.3449 23 6 1.6962 -1.1574 4.4005 24 9 0.3709 -1.1120 4.1420 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 3.8533 0.4368 -1.3573 31 1 3.9995 -1.0729 -0.4259 32 1 6.8075 -2.0051 -4.0811 33 1 2.9173 -1.1206 1.0288 34 1 1.0870 0.6163 2.5525 35 1 2.7589 1.0461 2.1182 36 1 5.4708 -1.2886 5.1386 37 1 3.8836 -2.4119 6.6484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = -141.109777 kcal Electronic energy + Delta-G solvation = -22746.877452 eV Core-core repulsion = 18880.368729 eV Total energy + Delta-G solvation = -3866.508723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.58783 -50.15857 -49.66510 -40.04481 -38.60125 -35.44401 -34.14625 -32.08026 -31.10199 -30.44259 -27.37942 -26.33357 -24.05056 -23.15373 -22.73275 -21.20999 -19.37438 -19.10528 -18.95007 -18.38988 -17.64158 -17.01971 -16.81313 -16.63466 -16.43239 -16.29006 -16.03769 -15.64941 -15.48439 -15.22318 -14.76917 -14.52729 -14.19279 -14.03843 -13.85054 -13.40954 -13.29792 -13.14904 -12.93661 -12.86107 -12.67061 -12.25282 -12.04140 -11.83061 -11.59087 -11.40907 -11.16942 -10.78141 -10.18401 -9.74469 -9.47391 -8.31314 -6.35206 -0.36769 -0.29545 1.32804 1.34240 1.45852 2.02445 2.33280 2.54233 2.87114 3.03441 3.12544 3.30698 3.38002 3.56986 3.75568 3.96665 4.15324 4.22919 4.38915 4.42392 4.61309 4.67699 4.69123 4.71927 4.79817 4.85335 4.90928 4.94805 4.98514 5.07957 5.38568 5.47356 5.50309 5.56256 5.64439 6.03808 6.25827 6.27801 6.72802 7.29259 8.85688 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.004896 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.993113 B = 5717.052642 C = 6788.779946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.087 3.913 3 H 0.045 0.955 4 C -0.098 4.098 5 C -0.008 4.008 6 C -0.532 4.532 7 H 0.032 0.968 8 C 0.006 3.994 9 N -0.950 5.950 10 Si 0.947 3.053 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.250 1.250 14 N -0.686 5.686 15 C 0.098 3.902 16 C -0.137 4.137 17 C 0.109 3.891 18 F -0.135 7.135 19 C -0.121 4.121 20 C -0.078 4.078 21 C 0.048 3.952 22 F -0.130 7.130 23 C 0.102 3.898 24 F -0.126 7.126 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.340 0.660 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.185 0.815 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 4.398 24.132 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.022 4.022 3 H 0.063 0.937 4 C -0.136 4.136 5 C -0.046 4.046 6 C -0.570 4.570 7 H 0.050 0.950 8 C -0.190 4.190 9 N -0.591 5.591 10 Si 0.770 3.230 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.174 1.174 14 N -0.319 5.319 15 C -0.031 4.031 16 C -0.139 4.139 17 C 0.089 3.911 18 F -0.114 7.114 19 C -0.139 4.139 20 C -0.096 4.096 21 C 0.028 3.972 22 F -0.109 7.109 23 C 0.081 3.919 24 F -0.104 7.104 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.202 0.798 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.912 4.124 24.170 25.222 hybrid contribution 1.081 0.566 -0.667 1.390 sum -4.832 4.689 23.503 24.449 Atomic orbital electron populations 1.21722 0.93202 1.02115 1.01747 1.21593 0.96533 0.95551 0.88506 0.93710 1.21534 0.95569 1.00038 0.96477 1.19520 0.94443 0.95707 0.94894 1.21476 0.92690 1.34253 1.08535 0.95006 1.25994 1.00597 0.95615 0.96832 1.70073 1.15300 1.45234 1.28502 0.85702 0.78146 0.80044 0.79065 1.18876 1.20852 1.17400 1.60728 1.33858 1.32751 1.04563 1.20781 1.01936 0.93079 0.87302 1.19724 0.92090 1.03197 0.98908 1.17598 0.85612 0.96798 0.91064 1.91558 1.68208 1.80588 1.71024 1.21413 1.03412 0.96947 0.92138 1.21289 0.88319 0.98583 1.01411 1.17850 0.89207 0.99823 0.90367 1.91535 1.68970 1.80569 1.69828 1.17237 0.78311 1.00900 0.95419 1.91526 1.30513 1.94576 1.93794 0.92105 0.91580 0.92735 0.92940 0.92117 0.96738 0.96593 0.92478 0.83970 0.88549 0.93180 0.79810 0.78851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.41 71.98 0.68 -2.77 16 2 C 0.09 2.75 2.65 44.92 0.12 2.87 16 3 H 0.04 1.39 7.80 -2.39 -0.02 1.37 16 4 C -0.10 -3.87 4.74 30.60 0.15 -3.73 16 5 C -0.01 -0.38 3.87 29.85 0.12 -0.27 16 6 C -0.53 -31.11 9.66 25.60 0.25 -30.86 16 7 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 8 C 0.01 0.38 5.47 84.66 0.46 0.84 16 9 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 10 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 14 N -0.69 -21.27 6.30 -495.57 -3.12 -24.39 16 15 C 0.10 2.54 5.25 85.56 0.45 2.99 16 16 C -0.14 -3.27 5.40 -19.78 -0.11 -3.37 16 17 C 0.11 2.37 7.24 22.37 0.16 2.54 16 18 F -0.14 -3.53 16.47 44.97 0.74 -2.79 16 19 C -0.12 -1.72 10.02 22.31 0.22 -1.49 16 20 C -0.08 -0.98 10.02 22.30 0.22 -0.75 16 21 C 0.05 0.91 7.31 22.41 0.16 1.08 16 22 F -0.13 -2.69 17.18 44.97 0.77 -1.92 16 23 C 0.10 2.38 7.25 22.40 0.16 2.54 16 24 F -0.13 -3.30 16.40 44.97 0.74 -2.57 16 25 H 0.06 1.43 7.45 -2.39 -0.02 1.41 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 31 H 0.02 0.73 5.85 -2.39 -0.01 0.71 16 32 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 33 H 0.34 11.70 6.46 -89.69 -0.58 11.12 16 34 H 0.10 2.32 6.94 -2.39 -0.02 2.31 16 35 H 0.05 1.31 7.55 -2.39 -0.02 1.29 16 36 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -68.34 321.07 4.82 -63.52 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.46 Total: 11.88 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.05 Total: -30.38 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.82 Total: -84.35 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 2.25 Total: -7.27 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -68.34 4.82 -63.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.592 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds