Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 C 1.53004 * 109.47077 * 239.99426 * 2 1 3 5 5 C 1.53004 * 109.46980 * 175.00293 * 4 2 1 6 6 C 1.50694 * 109.46775 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00431 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99498 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00142 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99748 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46905 * 60.00442 * 10 8 6 12 12 H 1.48501 * 109.46821 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47208 * 300.00462 * 10 8 6 14 14 N 1.46898 * 109.46706 * 119.99564 * 2 1 3 15 15 C 1.46896 * 111.00177 * 274.99810 * 14 2 1 16 16 C 1.50698 * 109.47353 * 179.97438 * 15 14 2 17 17 C 1.38251 * 119.97813 * 104.99919 * 16 15 14 18 18 C 1.38203 * 120.09321 * 180.02562 * 17 16 15 19 19 C 1.38446 * 120.04249 * 0.24114 * 18 17 16 20 20 F 1.35097 * 120.02251 * 179.71947 * 19 18 17 21 21 C 1.38578 * 119.95418 * 359.48390 * 19 18 17 22 22 F 1.35107 * 120.04343 * 180.26017 * 21 19 18 23 23 C 1.38412 * 119.98293 * 285.02520 * 16 15 14 24 24 F 1.35100 * 120.01637 * 359.95646 * 23 16 15 25 25 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46850 * 300.00857 * 1 2 3 27 27 H 1.09000 * 109.46577 * 60.00825 * 1 2 3 28 28 H 1.08997 * 109.47226 * 295.00130 * 4 2 1 29 29 H 1.09000 * 109.47056 * 55.00056 * 4 2 1 30 30 H 1.09003 * 109.46733 * 300.00307 * 5 4 2 31 31 H 1.09003 * 109.46557 * 59.99719 * 5 4 2 32 32 H 0.96993 * 120.00117 * 179.97438 * 9 8 6 33 33 H 1.00907 * 111.00119 * 151.04316 * 14 2 1 34 34 H 1.09003 * 109.46791 * 60.00343 * 15 14 2 35 35 H 1.08994 * 109.47234 * 300.00305 * 15 14 2 36 36 H 1.08000 * 119.95179 * 0.02562 * 17 16 15 37 37 H 1.08002 * 119.97607 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5650 -0.6135 -1.3136 6 6 4.0673 -1.3245 -2.5436 7 1 3.3689 -1.8050 -3.2127 8 6 5.4186 -1.3608 -2.8153 9 7 6.2691 -0.7754 -2.0008 10 14 6.0413 -2.2416 -4.3404 11 1 5.4489 -1.6159 -5.5499 12 1 7.5213 -2.1370 -4.4028 13 1 5.6487 -3.6725 -4.2806 14 7 2.0196 -0.6924 1.1995 15 6 2.0825 0.2227 2.3469 16 6 2.5872 -0.5216 3.5561 17 6 3.8826 -0.3250 3.9973 18 6 4.3481 -1.0067 5.1057 19 6 3.5193 -1.8920 5.7735 20 9 3.9766 -2.5625 6.8536 21 6 2.2187 -2.0862 5.3363 22 9 1.4066 -2.9458 5.9899 23 6 1.7539 -1.4021 4.2240 24 9 0.4880 -1.5936 3.7927 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2620 -2.1370 30 1 3.8533 0.4368 -1.3573 31 1 3.9994 -1.0729 -0.4257 32 1 7.2197 -0.8012 -2.1917 33 1 2.9173 -1.1205 1.0289 34 1 1.0870 0.6164 2.5524 35 1 2.7588 1.0462 2.1182 36 1 4.5316 0.3624 3.4751 37 1 5.3605 -0.8520 5.4485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -126.741357 kcal Electronic energy + Delta-G solvation = -22343.099762 eV Core-core repulsion = 18477.214101 eV Total energy + Delta-G solvation = -3865.885662 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.81463 -49.20603 -48.48336 -39.25812 -37.12338 -33.60162 -32.39836 -30.71362 -29.98039 -28.92372 -25.63106 -24.67223 -23.40913 -21.99407 -21.36319 -19.62423 -18.47442 -18.04971 -17.41712 -16.84671 -16.48961 -15.95283 -15.58888 -15.37113 -15.19824 -14.91554 -14.57594 -14.55181 -14.42283 -14.15343 -13.57147 -12.95749 -12.65479 -12.47964 -12.23186 -12.12128 -11.96594 -11.75408 -11.52752 -11.39169 -11.09304 -10.90597 -10.53401 -10.35239 -9.81196 -9.33107 -9.10917 -9.06185 -8.93608 -8.40060 -8.11911 -6.05348 -4.07059 0.53966 0.61507 2.94387 3.24496 3.30972 3.35288 3.38216 4.01421 4.12061 4.23062 4.30914 4.42639 4.56624 4.81888 5.12991 5.30974 5.36499 5.45910 5.47648 5.66123 5.67421 5.70861 5.75423 5.86719 5.97798 6.13414 6.31439 6.44568 6.47253 6.50336 6.85604 7.02186 7.35080 7.55184 7.72702 7.78278 7.93965 8.37857 8.99150 9.57428 11.05918 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.003936 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.861963 B = 7111.248178 C = 8119.458347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.682 5.682 15 C 0.098 3.902 16 C -0.097 4.097 17 C -0.061 4.061 18 C -0.136 4.136 19 C 0.093 3.907 20 F -0.123 7.123 21 C 0.024 3.976 22 F -0.121 7.121 23 C 0.124 3.876 24 F -0.109 7.109 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.261 0.739 33 H 0.355 0.645 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.153 0.847 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 2.728 15.132 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.058 0.942 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.317 5.317 15 C -0.031 4.031 16 C -0.099 4.099 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.073 3.927 20 F -0.102 7.102 21 C 0.003 3.997 22 F -0.099 7.099 23 C 0.103 3.897 24 F -0.087 7.087 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.177 0.823 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.171 0.829 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.070 2.445 15.353 17.079 hybrid contribution 0.968 -0.367 -0.748 1.277 sum -6.102 2.078 14.606 15.965 Atomic orbital electron populations 1.21796 0.95572 1.01903 1.00223 1.21624 0.94639 0.96099 0.90141 0.94159 1.21842 0.99678 0.99558 0.94229 1.19123 0.88737 0.96828 0.96915 1.21200 0.91959 1.34318 1.08366 0.92712 1.25004 0.97054 0.95548 0.96697 1.69930 1.02422 1.44120 1.37130 0.86665 0.77581 0.80309 0.83509 1.20252 1.21302 1.20206 1.60647 1.34954 1.32021 1.04086 1.20849 1.01046 0.93358 0.87847 1.20014 0.93786 0.97944 0.98109 1.21025 0.94053 0.98292 0.94598 1.21135 1.00868 0.96786 0.96692 1.17382 0.91103 0.96501 0.87754 1.91547 1.88632 1.78415 1.51589 1.17594 0.89220 0.97036 0.95851 1.91544 1.71541 1.67204 1.79651 1.17149 0.81497 0.97948 0.93127 1.91579 1.35075 1.93521 1.88568 0.92274 0.93750 0.92919 0.92382 0.92562 0.96925 0.96718 0.92971 0.82284 0.89834 0.93104 0.82899 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.42 37.16 0.35 -1.58 16 2 C 0.08 1.37 2.65 -67.71 -0.18 1.19 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 4 C -0.12 -2.27 4.74 -26.73 -0.13 -2.40 16 5 C 0.02 0.51 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 10 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 N -0.68 -10.67 6.30 -107.99 -0.68 -11.35 16 15 C 0.10 1.24 5.29 -4.98 -0.03 1.22 16 16 C -0.10 -1.16 5.40 -104.55 -0.56 -1.73 16 17 C -0.06 -0.61 9.66 -39.59 -0.38 -1.00 16 18 C -0.14 -1.30 10.02 -39.52 -0.40 -1.70 16 19 C 0.09 1.08 7.31 -39.38 -0.29 0.79 16 20 F -0.12 -1.49 17.18 2.25 0.04 -1.45 16 21 C 0.02 0.31 7.31 -39.32 -0.29 0.03 16 22 F -0.12 -1.69 17.10 2.25 0.04 -1.66 16 23 C 0.12 1.63 7.25 -39.38 -0.29 1.35 16 24 F -0.11 -1.59 16.67 2.25 0.04 -1.55 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.37 6.43 -51.93 -0.33 0.04 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.36 6.18 6.46 -39.29 -0.25 5.92 16 34 H 0.08 1.01 7.37 -51.93 -0.38 0.63 16 35 H 0.05 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.15 1.28 8.00 -52.49 -0.42 0.86 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -29.26 326.00 -7.34 -36.59 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.67 Total: 0.06 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.73 Total: -16.57 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.06 Total: -36.63 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.11 Total: -4.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.26 -7.34 -36.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.148 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds