Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 C 1.53004 * 109.47077 * 239.99426 * 2 1 3 5 5 C 1.53004 * 109.46980 * 175.00293 * 4 2 1 6 6 C 1.50694 * 109.46775 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00431 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99498 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00142 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99748 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46905 * 60.00442 * 10 8 6 12 12 H 1.48501 * 109.46821 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47208 * 300.00462 * 10 8 6 14 14 N 1.46898 * 109.46706 * 119.99564 * 2 1 3 15 15 C 1.46896 * 111.00177 * 274.99810 * 14 2 1 16 16 C 1.50698 * 109.47353 * 179.97438 * 15 14 2 17 17 C 1.38251 * 119.97813 * 104.99919 * 16 15 14 18 18 C 1.38203 * 120.09321 * 180.02562 * 17 16 15 19 19 C 1.38446 * 120.04249 * 0.24114 * 18 17 16 20 20 F 1.35097 * 120.02251 * 179.71947 * 19 18 17 21 21 C 1.38578 * 119.95418 * 359.48390 * 19 18 17 22 22 F 1.35107 * 120.04343 * 180.26017 * 21 19 18 23 23 C 1.38412 * 119.98293 * 285.02520 * 16 15 14 24 24 F 1.35100 * 120.01637 * 359.95646 * 23 16 15 25 25 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46850 * 300.00857 * 1 2 3 27 27 H 1.09000 * 109.46577 * 60.00825 * 1 2 3 28 28 H 1.08997 * 109.47226 * 295.00130 * 4 2 1 29 29 H 1.09000 * 109.47056 * 55.00056 * 4 2 1 30 30 H 1.09003 * 109.46733 * 300.00307 * 5 4 2 31 31 H 1.09003 * 109.46557 * 59.99719 * 5 4 2 32 32 H 0.96993 * 120.00117 * 179.97438 * 9 8 6 33 33 H 1.00907 * 111.00119 * 151.04316 * 14 2 1 34 34 H 1.09003 * 109.46791 * 60.00343 * 15 14 2 35 35 H 1.08994 * 109.47234 * 300.00305 * 15 14 2 36 36 H 1.08000 * 119.95179 * 0.02562 * 17 16 15 37 37 H 1.08002 * 119.97607 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5650 -0.6135 -1.3136 6 6 4.0673 -1.3245 -2.5436 7 1 3.3689 -1.8050 -3.2127 8 6 5.4186 -1.3608 -2.8153 9 7 6.2691 -0.7754 -2.0008 10 14 6.0413 -2.2416 -4.3404 11 1 5.4489 -1.6159 -5.5499 12 1 7.5213 -2.1370 -4.4028 13 1 5.6487 -3.6725 -4.2806 14 7 2.0196 -0.6924 1.1995 15 6 2.0825 0.2227 2.3469 16 6 2.5872 -0.5216 3.5561 17 6 3.8826 -0.3250 3.9973 18 6 4.3481 -1.0067 5.1057 19 6 3.5193 -1.8920 5.7735 20 9 3.9766 -2.5625 6.8536 21 6 2.2187 -2.0862 5.3363 22 9 1.4066 -2.9458 5.9899 23 6 1.7539 -1.4021 4.2240 24 9 0.4880 -1.5936 3.7927 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2620 -2.1370 30 1 3.8533 0.4368 -1.3573 31 1 3.9994 -1.0729 -0.4257 32 1 7.2197 -0.8012 -2.1917 33 1 2.9173 -1.1205 1.0289 34 1 1.0870 0.6164 2.5524 35 1 2.7588 1.0462 2.1182 36 1 4.5316 0.3624 3.4751 37 1 5.3605 -0.8520 5.4485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -142.588372 kcal Electronic energy + Delta-G solvation = -22343.786941 eV Core-core repulsion = 18477.214101 eV Total energy + Delta-G solvation = -3866.572840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.81463 -50.19530 -49.50463 -40.19739 -38.42350 -35.36208 -33.86153 -31.62259 -31.51054 -30.17051 -27.16047 -26.05410 -24.31934 -23.31938 -22.75271 -21.06822 -19.43609 -19.01816 -18.55981 -18.32339 -17.84249 -17.04926 -16.71500 -16.53374 -16.46043 -16.32933 -15.98081 -15.49225 -15.47942 -15.24148 -14.67564 -14.44225 -14.26848 -14.02616 -13.36461 -13.20727 -13.07739 -12.93906 -12.92232 -12.80449 -12.66126 -12.34238 -12.27998 -11.84275 -11.56140 -11.28025 -10.93620 -10.50705 -9.99706 -9.88586 -9.33290 -8.17893 -6.26816 -0.37866 -0.28845 1.41833 1.43266 1.51020 2.05057 2.32358 2.42784 3.06704 3.15468 3.18282 3.23962 3.38796 3.58725 3.86565 4.08297 4.21032 4.34159 4.49313 4.52519 4.61626 4.74299 4.79986 4.81595 4.86638 5.01447 5.05566 5.07598 5.11871 5.25675 5.47139 5.54978 5.56900 5.74398 5.87828 6.18563 6.29871 6.42281 6.88691 7.41714 8.92955 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.003936 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.861963 B = 7111.248178 C = 8119.458347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.090 3.910 3 H 0.041 0.959 4 C -0.103 4.103 5 C 0.029 3.971 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.927 5.927 10 Si 0.956 3.044 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.271 1.271 14 N -0.690 5.690 15 C 0.099 3.901 16 C -0.101 4.101 17 C -0.054 4.054 18 C -0.119 4.119 19 C 0.089 3.911 20 F -0.127 7.127 21 C 0.007 3.993 22 F -0.133 7.133 23 C 0.108 3.892 24 F -0.123 7.123 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.057 0.943 30 H -0.010 1.010 31 H 0.003 0.997 32 H 0.263 0.737 33 H 0.343 0.657 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.175 0.825 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 3.174 15.005 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.019 4.019 3 H 0.059 0.941 4 C -0.141 4.141 5 C -0.009 4.009 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.781 3.219 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.196 1.196 14 N -0.323 5.323 15 C -0.030 4.030 16 C -0.102 4.102 17 C -0.072 4.072 18 C -0.137 4.137 19 C 0.069 3.931 20 F -0.105 7.105 21 C -0.014 4.014 22 F -0.111 7.111 23 C 0.088 3.912 24 F -0.101 7.101 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.009 0.991 31 H 0.021 0.979 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.636 2.896 15.233 16.866 hybrid contribution 0.862 -0.484 -0.675 1.197 sum -5.774 2.412 14.558 15.846 Atomic orbital electron populations 1.21726 0.93603 1.01863 1.01568 1.21523 0.96063 0.95453 0.88846 0.94057 1.21656 0.96475 0.99630 0.96339 1.18993 0.91769 0.94750 0.95338 1.21664 0.92470 1.34648 1.09511 0.92805 1.25826 0.97341 0.96267 0.99705 1.70037 1.02703 1.45187 1.38777 0.85643 0.77097 0.79247 0.79924 1.19457 1.20779 1.19602 1.60686 1.34137 1.32929 1.04588 1.20895 1.01923 0.93173 0.86970 1.20038 0.94472 0.97876 0.97857 1.21313 0.93344 0.98089 0.94455 1.21470 1.01759 0.94943 0.95559 1.17556 0.90826 0.96902 0.87852 1.91539 1.88559 1.78611 1.51819 1.17805 0.89849 0.97459 0.96256 1.91504 1.72036 1.67685 1.79919 1.17313 0.81319 0.98897 0.93720 1.91535 1.36003 1.93770 1.88804 0.92985 0.92220 0.91779 0.93170 0.92452 0.99124 0.97885 0.92820 0.83702 0.89141 0.91914 0.80734 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.42 71.99 0.68 -2.77 16 2 C 0.09 2.85 2.65 44.92 0.12 2.97 16 3 H 0.04 1.30 7.80 -2.39 -0.02 1.28 16 4 C -0.10 -4.05 4.74 30.60 0.15 -3.90 16 5 C 0.03 1.41 4.80 29.85 0.14 1.56 16 6 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 7 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 8 C 0.01 0.38 5.46 84.66 0.46 0.85 16 9 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 10 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 N -0.69 -21.14 6.30 -495.58 -3.12 -24.26 16 15 C 0.10 2.38 5.29 85.56 0.45 2.83 16 16 C -0.10 -2.29 5.40 -19.82 -0.11 -2.40 16 17 C -0.05 -0.95 9.66 22.26 0.22 -0.74 16 18 C -0.12 -1.97 10.02 22.31 0.22 -1.75 16 19 C 0.09 1.95 7.31 22.40 0.16 2.12 16 20 F -0.13 -2.91 17.18 44.97 0.77 -2.14 16 21 C 0.01 0.19 7.31 22.44 0.16 0.35 16 22 F -0.13 -3.79 17.10 44.97 0.77 -3.02 16 23 C 0.11 2.82 7.25 22.40 0.16 2.99 16 24 F -0.12 -3.60 16.67 44.97 0.75 -2.85 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.41 7.45 -2.39 -0.02 1.39 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.00 0.15 6.43 -2.39 -0.02 0.14 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.34 11.91 6.46 -89.69 -0.58 11.33 16 34 H 0.09 2.05 7.37 -2.39 -0.02 2.04 16 35 H 0.06 1.37 7.86 -2.39 -0.02 1.36 16 36 H 0.18 2.39 8.00 -2.91 -0.02 2.36 16 37 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -62.51 326.00 5.05 -57.46 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.52 Total: 10.80 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.06 Total: -27.80 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.84 Total: -77.82 kcal Atomic # 9 Polarization: -10.30 SS G_CDS: 2.29 Total: -8.01 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -62.51 5.05 -57.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.131 kcal (2) G-P(sol) polarization free energy of solvation -62.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds