Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 C 1.52998 * 109.46837 * 174.99996 * 4 2 1 6 6 C 1.50700 * 109.47164 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99776 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00246 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99885 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47024 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46884 * 120.00327 * 10 8 6 13 13 H 1.48494 * 109.47112 * 240.00389 * 10 8 6 14 14 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 15 15 C 1.46906 * 110.99888 * 275.00023 * 14 2 1 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 2 17 17 C 1.38226 * 119.95321 * 269.72095 * 16 15 14 18 18 C 1.38432 * 120.04182 * 179.76877 * 17 16 15 19 19 F 1.35095 * 120.02187 * 180.28011 * 18 17 16 20 20 C 1.38594 * 119.95256 * 0.50888 * 18 17 16 21 21 F 1.35107 * 120.04316 * 179.72417 * 20 18 17 22 22 C 1.38601 * 119.91372 * 359.74616 * 20 18 17 23 23 F 1.35105 * 120.01932 * 179.97438 * 22 20 18 24 24 C 1.38218 * 119.95312 * 89.99945 * 16 15 14 25 25 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 26 26 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 27 27 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47201 * 294.99945 * 4 2 1 29 29 H 1.08999 * 109.47075 * 55.00466 * 4 2 1 30 30 H 1.08997 * 109.47183 * 299.99959 * 5 4 2 31 31 H 1.08999 * 109.47427 * 60.00339 * 5 4 2 32 32 H 0.96998 * 120.00072 * 180.02562 * 9 8 6 33 33 H 1.00901 * 111.00121 * 151.04609 * 14 2 1 34 34 H 1.09004 * 109.47040 * 299.99934 * 15 14 2 35 35 H 1.09000 * 109.47033 * 59.99886 * 15 14 2 36 36 H 1.07999 * 119.98223 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.98405 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3231 -2.5445 7 1 3.3686 -1.8036 -3.2136 8 6 5.4183 -1.3591 -2.8164 9 7 6.2689 -0.7745 -2.0013 10 14 6.0410 -2.2397 -4.3417 11 1 4.8910 -2.8112 -5.0874 12 1 6.7633 -1.2753 -5.2097 13 1 6.9636 -3.3320 -3.9407 14 7 2.0197 -0.6926 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5873 -0.5220 3.5560 17 6 1.6931 -1.1469 4.4048 18 6 2.1551 -1.8353 5.5134 19 9 1.2812 -2.4507 6.3395 20 6 3.5146 -1.8887 5.7776 21 9 3.9672 -2.5554 6.8621 22 6 4.4092 -1.2570 4.9282 23 9 5.7349 -1.3072 5.1841 24 6 3.9435 -0.5740 3.8178 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7715 -1.2057 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 7.2194 -0.7995 -2.1928 33 1 2.9173 -1.1206 1.0286 34 1 2.7589 1.0461 2.1183 35 1 1.0870 0.6162 2.5525 36 1 0.6335 -1.1016 4.2008 37 1 4.6402 -0.0810 3.1562 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -128.132855 kcal Electronic energy + Delta-G solvation = -22090.659373 eV Core-core repulsion = 18224.713371 eV Total energy + Delta-G solvation = -3865.946001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.86198 -49.28586 -48.54977 -39.39487 -37.11460 -33.58543 -32.38839 -30.73704 -30.02577 -28.99297 -25.69515 -24.71266 -23.54798 -21.91811 -21.38264 -19.66901 -18.30066 -18.07613 -17.58151 -16.88036 -16.48490 -16.13258 -15.57630 -15.37065 -15.22801 -15.02402 -14.93350 -14.57950 -14.47457 -14.17827 -13.22430 -13.17523 -12.68087 -12.53427 -12.43301 -12.05375 -11.85332 -11.81343 -11.61472 -11.41629 -11.14240 -10.95591 -10.52368 -10.36086 -9.84856 -9.35513 -9.12196 -9.10792 -8.97796 -8.42002 -8.17768 -6.06416 -4.08344 0.50919 0.59915 2.91858 3.20405 3.27926 3.36022 3.39847 3.99277 4.01692 4.21065 4.26266 4.41878 4.63533 4.82328 5.18568 5.28694 5.30174 5.34789 5.42298 5.55961 5.63117 5.67729 5.70632 5.80787 6.07586 6.08338 6.25439 6.41877 6.42764 6.44868 6.81347 6.98946 7.29424 7.52609 7.69082 7.73621 7.92584 8.36207 8.98368 9.56586 11.04866 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.003899 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.542301 B = 7179.648602 C = 8438.101366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.056 0.944 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.682 5.682 15 C 0.094 3.906 16 C -0.026 4.026 17 C -0.115 4.115 18 C 0.095 3.905 19 F -0.122 7.122 20 C 0.026 3.974 21 F -0.121 7.121 22 C 0.101 3.899 23 F -0.119 7.119 24 C -0.126 4.126 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.356 0.644 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 2.340 14.277 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.059 0.941 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.318 5.318 15 C -0.035 4.035 16 C -0.027 4.027 17 C -0.134 4.134 18 C 0.075 3.925 19 F -0.101 7.101 20 C 0.004 3.996 21 F -0.100 7.100 22 C 0.081 3.919 23 F -0.097 7.097 24 C -0.145 4.145 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.172 0.828 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.504 2.072 14.534 17.489 hybrid contribution 1.540 -0.267 -0.575 1.665 sum -7.964 1.805 13.959 16.172 Atomic orbital electron populations 1.21803 0.95546 1.01859 1.00317 1.21644 0.94629 0.96208 0.90196 0.94083 1.21842 0.99701 0.99551 0.94231 1.19138 0.88735 0.96891 0.96978 1.21262 0.91973 1.34262 1.08285 0.92596 1.25012 0.97086 0.95553 0.96707 1.69951 1.02375 1.44174 1.37015 0.86554 0.78892 0.79506 0.83181 1.19708 1.21042 1.20986 1.60687 1.35106 1.31896 1.04069 1.20969 1.01086 0.93361 0.88047 1.19623 0.91445 0.95925 0.95666 1.21037 1.02214 0.97652 0.92528 1.17323 0.84694 0.98586 0.91925 1.91551 1.67609 1.80516 1.70387 1.17584 0.91203 1.02020 0.88773 1.91543 1.89271 1.78087 1.51073 1.17318 0.77814 1.00815 0.95987 1.91577 1.29822 1.94636 1.93711 1.21227 0.96838 1.00258 0.96214 0.93730 0.92866 0.92268 0.92355 0.92534 0.96907 0.96719 0.93041 0.82205 0.93256 0.89626 0.82780 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.41 37.16 0.35 -1.39 16 2 C 0.08 1.25 2.65 -67.71 -0.18 1.07 16 3 H 0.04 0.64 7.80 -51.93 -0.41 0.23 16 4 C -0.12 -2.19 4.74 -26.73 -0.13 -2.32 16 5 C 0.02 0.47 4.80 -27.88 -0.13 0.34 16 6 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 7 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 10 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.68 -9.78 6.30 -107.99 -0.68 -10.46 16 15 C 0.09 1.07 5.61 -4.97 -0.03 1.04 16 16 C -0.03 -0.28 5.39 -104.63 -0.56 -0.84 16 17 C -0.11 -1.18 9.67 -39.51 -0.38 -1.56 16 18 C 0.10 1.10 7.31 -39.38 -0.29 0.81 16 19 F -0.12 -1.47 17.18 2.25 0.04 -1.43 16 20 C 0.03 0.32 7.31 -39.32 -0.29 0.04 16 21 F -0.12 -1.66 17.10 2.25 0.04 -1.62 16 22 C 0.10 1.28 7.31 -39.38 -0.29 0.99 16 23 F -0.12 -1.64 17.18 2.25 0.04 -1.60 16 24 C -0.13 -1.47 9.68 -39.52 -0.38 -1.85 16 25 H 0.04 0.49 7.45 -51.93 -0.39 0.10 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.36 5.86 6.46 -39.29 -0.25 5.61 16 34 H 0.05 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.09 0.83 7.38 -51.93 -0.38 0.44 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -28.73 326.75 -7.32 -36.05 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.68 Total: -0.13 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.72 Total: -16.68 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.06 Total: -35.77 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.12 Total: -4.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.73 -7.32 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.080 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds