Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 C 1.52998 * 109.46837 * 174.99996 * 4 2 1 6 6 C 1.50700 * 109.47164 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99776 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00246 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99885 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47024 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46884 * 120.00327 * 10 8 6 13 13 H 1.48494 * 109.47112 * 240.00389 * 10 8 6 14 14 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 15 15 C 1.46906 * 110.99888 * 275.00023 * 14 2 1 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 2 17 17 C 1.38226 * 119.95321 * 269.72095 * 16 15 14 18 18 C 1.38432 * 120.04182 * 179.76877 * 17 16 15 19 19 F 1.35095 * 120.02187 * 180.28011 * 18 17 16 20 20 C 1.38594 * 119.95256 * 0.50888 * 18 17 16 21 21 F 1.35107 * 120.04316 * 179.72417 * 20 18 17 22 22 C 1.38601 * 119.91372 * 359.74616 * 20 18 17 23 23 F 1.35105 * 120.01932 * 179.97438 * 22 20 18 24 24 C 1.38218 * 119.95312 * 89.99945 * 16 15 14 25 25 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 26 26 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 27 27 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47201 * 294.99945 * 4 2 1 29 29 H 1.08999 * 109.47075 * 55.00466 * 4 2 1 30 30 H 1.08997 * 109.47183 * 299.99959 * 5 4 2 31 31 H 1.08999 * 109.47427 * 60.00339 * 5 4 2 32 32 H 0.96998 * 120.00072 * 180.02562 * 9 8 6 33 33 H 1.00901 * 111.00121 * 151.04609 * 14 2 1 34 34 H 1.09004 * 109.47040 * 299.99934 * 15 14 2 35 35 H 1.09000 * 109.47033 * 59.99886 * 15 14 2 36 36 H 1.07999 * 119.98223 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.98405 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3231 -2.5445 7 1 3.3686 -1.8036 -3.2136 8 6 5.4183 -1.3591 -2.8164 9 7 6.2689 -0.7745 -2.0013 10 14 6.0410 -2.2397 -4.3417 11 1 4.8910 -2.8112 -5.0874 12 1 6.7633 -1.2753 -5.2097 13 1 6.9636 -3.3320 -3.9407 14 7 2.0197 -0.6926 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5873 -0.5220 3.5560 17 6 1.6931 -1.1469 4.4048 18 6 2.1551 -1.8353 5.5134 19 9 1.2812 -2.4507 6.3395 20 6 3.5146 -1.8887 5.7776 21 9 3.9672 -2.5554 6.8621 22 6 4.4092 -1.2570 4.9282 23 9 5.7349 -1.3072 5.1841 24 6 3.9435 -0.5740 3.8178 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7715 -1.2057 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 7.2194 -0.7995 -2.1928 33 1 2.9173 -1.1206 1.0286 34 1 2.7589 1.0461 2.1183 35 1 1.0870 0.6162 2.5525 36 1 0.6335 -1.1016 4.2008 37 1 4.6402 -0.0810 3.1562 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -143.464635 kcal Electronic energy + Delta-G solvation = -22091.324208 eV Core-core repulsion = 18224.713371 eV Total energy + Delta-G solvation = -3866.610837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.86587 -50.26982 -49.56109 -40.34152 -38.34835 -35.34219 -33.80805 -31.65781 -31.53096 -30.17371 -27.15156 -26.08458 -24.48025 -23.29146 -22.65954 -21.02669 -19.30212 -19.04552 -18.61798 -18.40611 -17.87368 -17.14975 -16.58917 -16.56499 -16.50721 -16.35236 -16.04717 -15.96386 -15.49402 -15.23213 -14.47576 -14.35969 -14.28666 -14.08007 -13.39448 -13.19039 -13.12222 -12.95339 -12.84442 -12.77529 -12.67927 -12.32006 -12.30052 -11.79876 -11.54041 -11.26183 -10.91215 -10.52850 -10.04613 -9.96454 -9.30381 -8.19227 -6.28237 -0.44128 -0.31495 1.39392 1.41191 1.52961 1.99136 2.26473 2.41701 3.03241 3.07526 3.14790 3.24791 3.34445 3.55200 3.95096 4.13330 4.31974 4.36175 4.37087 4.51573 4.56278 4.66705 4.78147 4.79307 4.85520 5.07022 5.11758 5.15904 5.18376 5.28345 5.50359 5.52631 5.59368 5.74743 5.87980 6.21373 6.29066 6.41469 6.88833 7.40928 8.91908 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.003899 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.542301 B = 7179.648602 C = 8438.101366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.104 4.104 5 C 0.025 3.975 6 C -0.540 4.540 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.956 3.044 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.281 1.281 14 N -0.685 5.685 15 C 0.096 3.904 16 C -0.023 4.023 17 C -0.096 4.096 18 C 0.094 3.906 19 F -0.124 7.124 20 C 0.015 3.985 21 F -0.131 7.131 22 C 0.087 3.913 23 F -0.131 7.131 24 C -0.126 4.126 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.056 0.944 30 H -0.012 1.012 31 H 0.002 0.998 32 H 0.262 0.738 33 H 0.340 0.660 34 H 0.049 0.951 35 H 0.113 0.887 36 H 0.182 0.818 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 2.419 13.938 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.021 4.021 3 H 0.056 0.944 4 C -0.142 4.142 5 C -0.012 4.012 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.782 3.218 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.318 5.318 15 C -0.033 4.033 16 C -0.024 4.024 17 C -0.116 4.116 18 C 0.074 3.926 19 F -0.102 7.102 20 C -0.006 4.006 21 F -0.109 7.109 22 C 0.067 3.933 23 F -0.109 7.109 24 C -0.145 4.145 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.006 0.994 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.320 2.157 14.200 18.287 hybrid contribution 2.092 -0.273 -0.457 2.159 sum -9.227 1.883 13.742 16.659 Atomic orbital electron populations 1.21731 0.92905 1.02213 1.01885 1.21552 0.96540 0.95274 0.88745 0.94400 1.21664 0.96044 0.99888 0.96600 1.19028 0.92234 0.94612 0.95297 1.21739 0.92390 1.34337 1.09391 0.92585 1.25860 0.97456 0.96342 0.99746 1.70065 1.02665 1.45482 1.38812 0.85525 0.78424 0.78344 0.79541 1.18745 1.20539 1.20647 1.60765 1.34009 1.32539 1.04511 1.21062 1.02693 0.92707 0.86796 1.19611 0.91066 0.95999 0.95742 1.21263 1.03366 0.95800 0.91126 1.17376 0.84116 0.98835 0.92310 1.91549 1.67495 1.80613 1.70548 1.17774 0.91866 1.02331 0.88671 1.91513 1.89492 1.78366 1.51572 1.17427 0.77429 1.01772 0.96651 1.91542 1.30653 1.94837 1.93872 1.21300 0.97477 0.99939 0.95778 0.91312 0.92220 0.92484 0.92830 0.92527 0.99393 0.98004 0.92939 0.84021 0.93314 0.86868 0.80048 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.41 71.98 0.68 -2.19 16 2 C 0.09 2.53 2.65 44.92 0.12 2.65 16 3 H 0.04 1.12 7.80 -2.39 -0.02 1.10 16 4 C -0.10 -3.90 4.74 30.59 0.15 -3.76 16 5 C 0.03 1.24 4.80 29.85 0.14 1.39 16 6 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 7 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 10 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 N -0.69 -18.48 6.30 -495.57 -3.12 -21.60 16 15 C 0.10 1.93 5.61 85.56 0.48 2.41 16 16 C -0.02 -0.46 5.39 -19.87 -0.11 -0.57 16 17 C -0.10 -1.72 9.67 22.31 0.22 -1.51 16 18 C 0.09 2.03 7.31 22.40 0.16 2.20 16 19 F -0.12 -2.76 17.18 44.97 0.77 -1.99 16 20 C 0.01 0.37 7.31 22.44 0.16 0.53 16 21 F -0.13 -3.60 17.10 44.97 0.77 -2.83 16 22 C 0.09 2.22 7.31 22.40 0.16 2.38 16 23 F -0.13 -3.69 17.18 44.97 0.77 -2.92 16 24 C -0.13 -2.87 9.68 22.31 0.22 -2.66 16 25 H 0.07 1.21 7.45 -2.39 -0.02 1.19 16 26 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.00 0.09 6.43 -2.39 -0.02 0.07 16 32 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.34 11.10 6.46 -89.69 -0.58 10.52 16 34 H 0.05 1.02 8.00 -2.38 -0.02 1.00 16 35 H 0.11 1.70 7.38 -2.39 -0.02 1.68 16 36 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -61.66 326.75 5.10 -56.57 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.52 Total: 9.65 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.08 Total: -27.95 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.84 Total: -76.15 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 2.31 Total: -7.74 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -61.66 5.10 -56.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.897 kcal (2) G-P(sol) polarization free energy of solvation -61.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds