Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 N 1.46910 * 109.46729 * 240.00732 * 2 1 3 15 15 C 1.46900 * 111.00108 * 85.00300 * 14 2 1 16 16 C 1.50692 * 109.47257 * 179.97438 * 15 14 2 17 17 C 1.38432 * 119.99932 * 269.72850 * 16 15 14 18 18 F 1.35099 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.38436 * 120.00163 * 179.78576 * 17 16 15 20 20 C 1.38434 * 119.99694 * 0.44124 * 19 17 16 21 21 F 1.35107 * 119.99762 * 179.83503 * 20 19 17 22 22 C 1.38433 * 120.00490 * 359.80810 * 20 19 17 23 23 C 1.38433 * 120.00167 * 89.99280 * 16 15 14 24 24 F 1.35094 * 120.00267 * 359.97438 * 23 16 15 25 25 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 27 27 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 28 28 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 29 29 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.00891 * 110.99568 * 321.04414 * 14 2 1 34 34 H 1.09001 * 109.46729 * 299.99669 * 15 14 2 35 35 H 1.08996 * 109.47288 * 59.99365 * 15 14 2 36 36 H 1.08001 * 120.00054 * 180.26878 * 19 17 16 37 37 H 1.07995 * 120.00384 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0671 -1.3235 2.5442 7 1 3.3687 -1.8041 3.2133 8 6 5.4185 -1.3605 2.8154 9 7 5.8568 -1.9806 3.8892 10 14 6.6265 -0.5299 1.6578 11 1 6.8322 0.8778 2.0837 12 1 7.9234 -1.2524 1.6942 13 1 6.0845 -0.5548 0.2755 14 7 2.0196 -0.6924 -1.1996 15 6 2.0824 0.2228 -2.3470 16 6 2.5883 -0.5211 -3.5559 17 6 3.9461 -0.5682 -3.8214 18 9 4.8176 0.0531 -2.9970 19 6 4.4113 -1.2554 -4.9295 20 6 3.5179 -1.8877 -5.7771 21 9 3.9717 -2.5555 -6.8604 22 6 2.1597 -1.8362 -5.5145 23 6 1.6949 -1.1527 -4.4039 24 9 0.3695 -1.1027 -4.1475 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.7516 -1.7716 1.2053 29 1 1.6054 -0.2620 2.1368 30 1 3.8532 0.4368 1.3572 31 1 3.9994 -1.0729 0.4257 32 1 6.8075 -2.0063 4.0802 33 1 1.4495 -1.4977 -1.4102 34 1 1.0870 0.6166 -2.5525 35 1 2.7587 1.0464 -2.1182 36 1 5.4710 -1.2958 -5.1342 37 1 1.4628 -2.3299 -6.1755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = -122.165425 kcal Electronic energy + Delta-G solvation = -22627.643996 eV Core-core repulsion = 18761.956762 eV Total energy + Delta-G solvation = -3865.687234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.42487 -49.40413 -49.14946 -39.11458 -37.28193 -33.67045 -32.38459 -30.86675 -30.37807 -28.90769 -25.59677 -24.84470 -23.52498 -22.02803 -21.07879 -19.90161 -18.86924 -18.20142 -16.67582 -16.62457 -16.38190 -16.17008 -16.04052 -15.75453 -15.52132 -15.18844 -14.88649 -14.69308 -14.26182 -14.04080 -13.52909 -12.92981 -12.63696 -12.62146 -12.47300 -12.40531 -12.08521 -11.91954 -11.80093 -11.46053 -11.29797 -10.82993 -10.51032 -9.80342 -9.62971 -9.47251 -9.23907 -9.10104 -8.98333 -8.40842 -8.12236 -5.92247 -3.88227 0.44349 0.50965 2.79935 3.24096 3.40940 3.48057 3.58042 3.89237 3.94242 4.15686 4.25626 4.42354 4.57106 4.58700 5.13637 5.20703 5.31499 5.35203 5.40310 5.43727 5.45899 5.50828 5.57280 5.59878 5.74213 5.97791 6.18621 6.25921 6.34196 6.50876 6.70878 7.09515 7.22397 7.52900 7.56686 7.76251 7.96689 8.67932 9.13934 9.72238 11.21603 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.005019 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.140874 B = 5577.010366 C = 6872.232787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.074 0.926 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.876 3.124 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.258 1.258 14 N -0.668 5.668 15 C 0.099 3.901 16 C -0.160 4.160 17 C 0.187 3.813 18 F -0.108 7.108 19 C -0.204 4.204 20 C 0.159 3.841 21 F -0.124 7.124 22 C -0.205 4.205 23 C 0.164 3.836 24 F -0.121 7.121 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.002 0.998 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.339 0.661 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 3.555 -21.700 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.704 3.296 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.183 1.183 14 N -0.298 5.298 15 C -0.030 4.030 16 C -0.163 4.163 17 C 0.166 3.834 18 F -0.086 7.086 19 C -0.224 4.224 20 C 0.139 3.861 21 F -0.102 7.102 22 C -0.225 4.225 23 C 0.144 3.856 24 F -0.100 7.100 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.174 0.826 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.233 3.605 -21.423 23.232 hybrid contribution -0.164 0.400 -0.719 0.839 sum -8.398 4.004 -22.142 24.017 Atomic orbital electron populations 1.22519 0.98028 1.01885 1.01512 1.21808 0.91490 0.98372 0.91090 0.90764 1.21450 0.99035 0.99070 0.93177 1.19477 0.91441 0.95880 0.97606 1.21257 0.92804 1.33956 1.07436 0.91425 1.25015 0.98439 0.95083 0.95034 1.69932 1.14401 1.44121 1.26523 0.86811 0.80438 0.79464 0.82914 1.20625 1.21730 1.18264 1.60637 1.58067 1.08827 1.02311 1.20748 0.99980 0.95074 0.87200 1.19947 0.92049 1.04537 0.99739 1.16706 0.85988 0.92689 0.87972 1.91638 1.67775 1.79176 1.70025 1.21116 1.02116 1.02986 0.96139 1.16758 0.91025 0.93524 0.84750 1.91564 1.89461 1.77685 1.51532 1.20982 0.95281 1.05908 1.00296 1.16710 0.77755 0.97187 0.93958 1.91550 1.30391 1.94341 1.93671 0.92535 0.91917 0.93599 0.92806 0.92716 0.97927 0.95043 0.92997 0.84301 0.93560 0.89139 0.82602 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.16 37.16 0.34 -1.93 16 2 C 0.08 1.26 2.59 -67.71 -0.18 1.09 16 3 H 0.07 1.16 7.80 -51.93 -0.40 0.76 16 4 C -0.09 -1.76 4.83 -26.74 -0.13 -1.89 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 6 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 7 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 9 N -0.91 -28.98 13.96 55.43 0.77 -28.20 16 10 Si 0.88 22.68 27.47 -169.99 -4.67 18.01 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 14 N -0.67 -10.03 5.69 -108.00 -0.61 -10.64 16 15 C 0.10 1.25 5.26 -4.98 -0.03 1.23 16 16 C -0.16 -1.90 5.40 -104.48 -0.56 -2.47 16 17 C 0.19 2.31 7.24 -39.44 -0.29 2.03 16 18 F -0.11 -1.61 16.47 2.25 0.04 -1.58 16 19 C -0.20 -2.10 10.00 -39.44 -0.39 -2.50 16 20 C 0.16 1.53 7.30 -39.44 -0.29 1.24 16 21 F -0.12 -1.20 17.27 2.25 0.04 -1.16 16 22 C -0.20 -1.85 10.00 -39.43 -0.39 -2.24 16 23 C 0.16 1.71 7.24 -39.43 -0.29 1.42 16 24 F -0.12 -1.28 16.48 2.25 0.04 -1.24 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.00 0.06 7.57 -51.93 -0.39 -0.33 16 31 H 0.03 0.80 6.81 -51.93 -0.35 0.44 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 33 H 0.34 4.73 8.46 -39.30 -0.33 4.40 16 34 H 0.05 0.52 6.93 -51.93 -0.36 0.16 16 35 H 0.09 1.20 7.54 -51.93 -0.39 0.81 16 36 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -31.83 323.71 -7.01 -38.84 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.74 Total: -0.94 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.74 Total: -17.98 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.16 Total: -38.85 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.11 Total: -3.98 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.83 -7.01 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.325 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds