Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 N 1.46910 * 109.46729 * 240.00732 * 2 1 3 15 15 C 1.46900 * 111.00108 * 85.00300 * 14 2 1 16 16 C 1.50692 * 109.47257 * 179.97438 * 15 14 2 17 17 C 1.38432 * 119.99932 * 269.72850 * 16 15 14 18 18 F 1.35099 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.38436 * 120.00163 * 179.78576 * 17 16 15 20 20 C 1.38434 * 119.99694 * 0.44124 * 19 17 16 21 21 F 1.35107 * 119.99762 * 179.83503 * 20 19 17 22 22 C 1.38433 * 120.00490 * 359.80810 * 20 19 17 23 23 C 1.38433 * 120.00167 * 89.99280 * 16 15 14 24 24 F 1.35094 * 120.00267 * 359.97438 * 23 16 15 25 25 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 27 27 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 28 28 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 29 29 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.00891 * 110.99568 * 321.04414 * 14 2 1 34 34 H 1.09001 * 109.46729 * 299.99669 * 15 14 2 35 35 H 1.08996 * 109.47288 * 59.99365 * 15 14 2 36 36 H 1.08001 * 120.00054 * 180.26878 * 19 17 16 37 37 H 1.07995 * 120.00384 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0671 -1.3235 2.5442 7 1 3.3687 -1.8041 3.2133 8 6 5.4185 -1.3605 2.8154 9 7 5.8568 -1.9806 3.8892 10 14 6.6265 -0.5299 1.6578 11 1 6.8322 0.8778 2.0837 12 1 7.9234 -1.2524 1.6942 13 1 6.0845 -0.5548 0.2755 14 7 2.0196 -0.6924 -1.1996 15 6 2.0824 0.2228 -2.3470 16 6 2.5883 -0.5211 -3.5559 17 6 3.9461 -0.5682 -3.8214 18 9 4.8176 0.0531 -2.9970 19 6 4.4113 -1.2554 -4.9295 20 6 3.5179 -1.8877 -5.7771 21 9 3.9717 -2.5555 -6.8604 22 6 2.1597 -1.8362 -5.5145 23 6 1.6949 -1.1527 -4.4039 24 9 0.3695 -1.1027 -4.1475 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.7516 -1.7716 1.2053 29 1 1.6054 -0.2620 2.1368 30 1 3.8532 0.4368 1.3572 31 1 3.9994 -1.0729 0.4257 32 1 6.8075 -2.0063 4.0802 33 1 1.4495 -1.4977 -1.4102 34 1 1.0870 0.6166 -2.5525 35 1 2.7587 1.0464 -2.1182 36 1 5.4710 -1.2958 -5.1342 37 1 1.4628 -2.3299 -6.1755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = -141.214278 kcal Electronic energy + Delta-G solvation = -22628.470017 eV Core-core repulsion = 18761.956762 eV Total energy + Delta-G solvation = -3866.513255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.21226 -50.16860 -50.13850 -39.97226 -38.48009 -35.41724 -34.00965 -31.99366 -31.65828 -30.06526 -27.15585 -26.07946 -24.34066 -23.03315 -22.67541 -21.45393 -19.70423 -19.03896 -18.83254 -17.50301 -17.28520 -17.04391 -16.93461 -16.61917 -16.43266 -16.33807 -16.26696 -15.87640 -15.48255 -15.24940 -14.86956 -14.48000 -14.33143 -13.88219 -13.60898 -13.35671 -13.23345 -13.11844 -12.89834 -12.81921 -12.65787 -12.38942 -12.03899 -11.66827 -11.49071 -11.35968 -11.11858 -10.71740 -10.03750 -9.94122 -9.25380 -8.26380 -6.27848 -0.36955 -0.29165 1.34957 1.37872 1.53347 1.98880 2.39273 2.43351 3.08532 3.10237 3.12414 3.20957 3.45223 3.54234 3.73382 4.00428 4.23994 4.33247 4.42390 4.48056 4.55993 4.61186 4.66437 4.74317 4.74679 4.87704 4.92010 5.00338 5.02731 5.24532 5.37511 5.53912 5.60209 5.70236 5.78361 6.11929 6.35030 6.47838 6.81009 7.36646 8.90793 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.005019 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.140874 B = 5577.010366 C = 6872.232787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.075 0.925 4 C -0.084 4.084 5 C 0.002 3.998 6 C -0.528 4.528 7 H 0.029 0.971 8 C 0.004 3.996 9 N -0.955 5.955 10 Si 0.946 3.054 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.248 1.248 14 N -0.687 5.687 15 C 0.103 3.897 16 C -0.168 4.168 17 C 0.163 3.837 18 F -0.129 7.129 19 C -0.199 4.199 20 C 0.161 3.839 21 F -0.122 7.122 22 C -0.189 4.189 23 C 0.164 3.836 24 F -0.121 7.121 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.004 0.996 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.169 0.831 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 4.207 -24.332 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 H 0.093 0.907 4 C -0.122 4.122 5 C -0.036 4.036 6 C -0.566 4.566 7 H 0.048 0.952 8 C -0.192 4.192 9 N -0.597 5.597 10 Si 0.770 3.230 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.172 1.172 14 N -0.319 5.319 15 C -0.026 4.026 16 C -0.170 4.170 17 C 0.143 3.857 18 F -0.107 7.107 19 C -0.218 4.218 20 C 0.141 3.859 21 F -0.100 7.100 22 C -0.208 4.208 23 C 0.144 3.856 24 F -0.099 7.099 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.187 0.813 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.955 4.261 -24.066 26.030 hybrid contribution 0.010 0.115 0.116 0.163 sum -8.946 4.375 -23.951 25.939 Atomic orbital electron populations 1.22391 0.95346 1.02480 1.02697 1.21568 0.93509 0.97442 0.89362 0.90721 1.21334 0.95825 0.99294 0.95762 1.19362 0.94670 0.94882 0.94681 1.21660 0.92542 1.33843 1.08576 0.95226 1.25959 1.00624 0.95842 0.96749 1.70078 1.15098 1.45881 1.28627 0.85705 0.77737 0.78699 0.80848 1.19336 1.21129 1.17151 1.60513 1.58651 1.09683 1.03019 1.20697 1.00726 0.94483 0.86676 1.19922 0.92172 1.05087 0.99840 1.16912 0.86050 0.94014 0.88758 1.91578 1.68449 1.79862 1.70847 1.21241 1.03075 1.02105 0.95404 1.16748 0.91180 0.93334 0.84611 1.91577 1.89486 1.77591 1.51375 1.21211 0.95436 1.04507 0.99691 1.16672 0.77563 0.97270 0.94114 1.91554 1.30257 1.94356 1.93713 0.92258 0.91514 0.91601 0.93692 0.93032 0.97718 0.95650 0.92709 0.83731 0.91801 0.90077 0.81330 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.16 71.98 0.66 -3.20 16 2 C 0.09 2.67 2.59 44.91 0.12 2.79 16 3 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 4 C -0.08 -3.30 4.83 30.59 0.15 -3.16 16 5 C 0.00 0.07 3.93 29.85 0.12 0.19 16 6 C -0.53 -31.86 9.66 25.60 0.25 -31.61 16 7 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 8 C 0.00 0.26 5.47 84.66 0.46 0.72 16 9 N -0.96 -62.21 13.96 21.45 0.30 -61.91 16 10 Si 0.95 47.05 27.47 68.60 1.88 48.93 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 14 N -0.69 -19.64 5.69 -495.59 -2.82 -22.47 16 15 C 0.10 2.43 5.26 85.55 0.45 2.88 16 16 C -0.17 -3.71 5.40 -19.77 -0.11 -3.82 16 17 C 0.16 3.84 7.24 22.36 0.16 4.00 16 18 F -0.13 -3.78 16.47 44.97 0.74 -3.04 16 19 C -0.20 -3.74 10.00 22.36 0.22 -3.52 16 20 C 0.16 2.69 7.30 22.36 0.16 2.85 16 21 F -0.12 -2.03 17.27 44.97 0.78 -1.25 16 22 C -0.19 -2.83 10.00 22.36 0.22 -2.61 16 23 C 0.16 3.00 7.24 22.36 0.16 3.16 16 24 F -0.12 -2.20 16.48 44.97 0.74 -1.46 16 25 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 26 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.07 1.26 7.45 -2.38 -0.02 1.24 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 31 H 0.03 1.27 6.81 -2.39 -0.02 1.26 16 32 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.34 9.04 8.46 -89.70 -0.76 8.29 16 34 H 0.06 1.27 6.93 -2.39 -0.02 1.26 16 35 H 0.08 2.06 7.54 -2.39 -0.02 2.04 16 36 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -69.27 323.71 4.93 -64.34 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.28 Total: 8.18 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.03 Total: -31.32 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.52 Total: -84.38 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 2.26 Total: -5.75 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.88 Total: 48.93 kcal Total: -69.27 4.93 -64.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.874 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds