Wall clock time and date at job start Tue Mar 31 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20758 * 120.00089 * 2 1 4 4 C 1.50699 * 119.99836 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.64375 * 31.86045 * 4 2 1 6 6 C 1.55155 * 110.71804 * 155.00695 * 4 2 1 7 7 C 1.54907 * 101.58499 * 154.04419 * 6 4 2 8 8 N 1.47434 * 104.82875 * 322.98763 * 7 6 4 9 9 C 1.34776 * 125.64456 * 204.09418 * 8 7 6 10 10 O 1.21554 * 119.99514 * 184.25583 * 9 8 7 11 11 C 1.47882 * 120.00242 * 4.25453 * 9 8 7 12 12 C 1.39924 * 120.02667 * 150.62267 * 11 9 8 13 13 C 1.38323 * 120.35966 * 179.97438 * 12 11 9 14 14 C 1.37756 * 120.41410 * 359.97438 * 13 12 11 15 15 C 1.40746 * 120.03844 * 359.97438 * 14 13 12 16 16 C 1.41434 * 120.17725 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99847 * 204.94209 * 16 15 14 18 18 C 1.39936 * 120.00141 * 24.93881 * 16 15 14 19 19 N 1.30822 * 120.00190 * 213.97101 * 18 16 15 20 20 Si 1.86804 * 119.99721 * 33.97030 * 18 16 15 21 21 H 1.48506 * 109.46999 * 266.74160 * 20 18 16 22 22 H 1.48503 * 109.46939 * 146.74739 * 20 18 16 23 23 H 1.48492 * 109.47200 * 26.74319 * 20 18 16 24 24 C 1.39001 * 120.02834 * 330.85777 * 11 9 8 25 25 C 1.47018 * 108.70156 * 24.35804 * 8 7 6 26 26 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46982 * 300.00612 * 1 2 3 28 28 H 1.08996 * 109.46882 * 60.00601 * 1 2 3 29 29 H 1.09002 * 111.01023 * 35.96358 * 6 4 2 30 30 H 1.09005 * 111.03352 * 272.12950 * 6 4 2 31 31 H 1.08998 * 110.36723 * 204.15023 * 7 6 4 32 32 H 1.08998 * 110.46386 * 81.87187 * 7 6 4 33 33 H 1.08002 * 119.81833 * 359.97438 * 12 11 9 34 34 H 1.08004 * 119.79210 * 180.02562 * 13 12 11 35 35 H 1.07999 * 119.97925 * 179.97438 * 14 13 12 36 36 H 0.97003 * 119.99868 * 5.09698 * 19 18 16 37 37 H 1.08002 * 120.19768 * 359.97438 * 24 11 9 38 38 H 1.08997 * 109.88122 * 118.13383 * 25 8 7 39 39 H 1.09003 * 109.87752 * 239.29993 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7024 -2.0713 -0.5375 6 6 3.6741 -1.1231 -0.6126 7 6 4.4597 -2.2699 0.0709 8 7 3.9219 -2.3307 1.4423 9 6 4.5666 -2.8252 2.5176 10 8 3.9963 -2.8959 3.5887 11 6 5.9678 -3.2818 2.3943 12 6 6.8269 -3.2109 3.4965 13 6 8.1386 -3.6366 3.3891 14 6 8.6144 -4.1355 2.1965 15 6 7.7648 -4.2155 1.0772 16 6 8.2504 -4.7268 -0.1489 17 1 7.7830 -4.4361 -1.0781 18 6 9.3365 -5.6091 -0.1579 19 7 10.1935 -5.5816 -1.1460 20 14 9.5625 -6.8264 1.2409 21 1 10.4571 -6.2376 2.2697 22 1 10.1676 -8.0769 0.7160 23 1 8.2428 -7.1323 1.8490 24 6 6.4339 -3.7771 1.1821 25 6 2.5636 -1.7683 1.4413 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 4.0923 -0.1517 -0.3490 30 1 3.6513 -1.2557 -1.6944 31 1 5.5251 -2.0405 0.0910 32 1 4.2851 -3.2130 -0.4471 33 1 6.4637 -2.8217 4.4363 34 1 8.7936 -3.5781 4.2458 35 1 9.6399 -4.4655 2.1203 36 1 10.1188 -4.9018 -1.8339 37 1 5.7753 -3.8305 0.3278 38 1 1.8466 -2.5304 1.7464 39 1 2.5144 -0.9170 2.1204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188676681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:09 Heat of formation + Delta-G solvation = -53.194649 kcal Electronic energy + Delta-G solvation = -22230.416076 eV Core-core repulsion = 18909.576380 eV Total energy + Delta-G solvation = -3320.839697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50176 -39.28115 -37.44245 -36.73113 -33.84739 -32.33145 -30.58149 -30.34467 -30.14957 -28.48544 -24.96911 -24.69359 -22.38845 -21.92107 -20.57918 -19.53311 -19.47473 -18.02284 -16.89183 -16.60064 -15.61258 -15.48994 -15.23848 -14.92171 -14.82819 -14.27287 -13.95018 -13.73389 -13.39875 -13.20842 -12.75662 -12.60216 -12.46788 -12.44731 -12.33807 -12.19492 -11.62377 -11.48028 -11.31341 -11.15092 -10.91308 -10.51982 -10.41445 -10.08648 -9.90152 -9.67046 -9.31102 -9.01896 -8.49394 -7.88131 -7.80664 -7.47130 -4.61460 1.62647 1.99057 2.58199 3.15705 3.16196 3.28000 3.43064 3.54436 3.78455 3.95632 4.25046 4.37466 4.41009 4.73678 4.93912 5.06976 5.13302 5.16284 5.23261 5.26292 5.29746 5.53858 5.63267 5.72797 5.76221 5.90353 5.96250 6.09478 6.22580 6.40912 6.45446 6.60258 6.83466 7.10619 7.21482 7.38438 7.46696 7.53258 7.64869 7.77511 7.82851 8.26130 8.44604 8.57842 8.64076 9.80516 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.004158 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.898173 B = 6732.077160 C = 7450.253068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.367 3.633 3 O -0.451 6.451 4 C -0.157 4.157 5 H 0.111 0.889 6 C -0.126 4.126 7 C 0.097 3.903 8 N -0.618 5.618 9 C 0.582 3.418 10 O -0.550 6.550 11 C -0.096 4.096 12 C -0.196 4.196 13 C -0.081 4.081 14 C -0.224 4.224 15 C 0.090 3.910 16 C -0.528 4.528 17 H 0.080 0.920 18 C 0.056 3.944 19 N -0.794 5.794 20 Si 1.056 2.944 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.265 1.265 24 C -0.196 4.196 25 C 0.129 3.871 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.291 0.709 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 5.470 -1.679 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.242 3.758 3 O -0.323 6.323 4 C -0.177 4.177 5 H 0.129 0.871 6 C -0.164 4.164 7 C -0.025 4.025 8 N -0.352 5.352 9 C 0.374 3.626 10 O -0.429 6.429 11 C -0.099 4.099 12 C -0.216 4.216 13 C -0.099 4.099 14 C -0.244 4.244 15 C 0.087 3.913 16 C -0.555 4.555 17 H 0.098 0.902 18 C -0.167 4.167 19 N -0.414 5.414 20 Si 0.880 3.120 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.216 4.216 25 C 0.006 3.994 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.476 4.723 -0.640 13.356 hybrid contribution -1.020 1.208 -0.791 1.768 sum -13.497 5.931 -1.430 14.812 Atomic orbital electron populations 1.22286 0.94008 1.04883 1.04841 1.24397 0.91901 0.89548 0.69979 1.90422 1.71964 1.34850 1.35113 1.22940 0.98541 0.97842 0.98356 0.87123 1.22889 0.92604 1.00490 1.00393 1.22736 1.00335 0.97936 0.81540 1.48327 1.15484 1.62347 1.09085 1.18616 0.86653 0.75689 0.81609 1.90691 1.68651 1.56296 1.27224 1.19309 0.90926 1.03674 0.95980 1.20336 0.93958 1.10385 0.96941 1.20580 0.94696 0.97967 0.96704 1.21269 0.99257 1.09261 0.94564 1.17590 0.90358 0.90702 0.92657 1.20500 1.14525 1.26552 0.93910 0.90195 1.27214 0.90192 0.98538 1.00763 1.70554 1.28962 1.31730 1.10121 0.83847 0.78426 0.75271 0.74439 1.19776 1.20958 1.18887 1.21553 0.95998 1.08397 0.95604 1.21550 0.85323 0.98506 0.94042 0.89784 0.88861 0.88895 0.89234 0.89421 0.88336 0.90710 0.87962 0.88130 0.87684 0.89797 0.86915 0.90647 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 10.33 36.01 0.37 -0.85 16 2 C 0.37 3.60 6.32 -29.03 -0.18 3.42 16 3 O -0.45 -6.18 16.57 6.00 0.10 -6.09 16 4 C -0.16 -1.55 3.17 -89.93 -0.29 -1.84 16 5 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 6 C -0.13 -1.44 6.40 -24.59 -0.16 -1.60 16 7 C 0.10 1.39 5.04 -2.53 -0.01 1.37 16 8 N -0.62 -10.27 3.33 -171.61 -0.57 -10.84 16 9 C 0.58 12.06 7.62 -12.31 -0.09 11.96 16 10 O -0.55 -12.64 17.02 5.32 0.09 -12.55 16 11 C -0.10 -2.12 5.67 -105.04 -0.60 -2.72 16 12 C -0.20 -4.35 9.60 -38.92 -0.37 -4.73 16 13 C -0.08 -1.77 10.01 -39.73 -0.40 -2.16 16 14 C -0.22 -5.27 7.65 -38.81 -0.30 -5.56 16 15 C 0.09 2.18 5.12 -106.87 -0.55 1.63 16 16 C -0.53 -13.27 9.29 -37.73 -0.35 -13.62 16 17 H 0.08 2.03 8.06 -52.49 -0.42 1.61 16 18 C 0.06 1.40 5.13 -17.35 -0.09 1.31 16 19 N -0.79 -20.04 13.65 55.55 0.76 -19.28 16 20 Si 1.06 23.00 25.81 -169.99 -4.39 18.61 16 21 H -0.27 -5.67 6.56 56.52 0.37 -5.30 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.20 -4.36 7.65 -38.44 -0.29 -4.66 16 25 C 0.13 1.68 6.47 -3.06 -0.02 1.66 16 26 H 0.08 0.35 7.99 -51.93 -0.41 -0.07 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 1.17 7.23 -51.93 -0.38 0.80 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.60 6.22 -51.93 -0.32 1.27 16 32 H 0.07 1.00 7.28 -51.93 -0.38 0.62 16 33 H 0.10 2.18 7.90 -52.49 -0.41 1.76 16 34 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 35 H 0.11 2.44 5.21 -52.49 -0.27 2.17 16 36 H 0.29 7.11 8.73 -40.82 -0.36 6.75 16 37 H 0.11 2.27 4.72 -52.49 -0.25 2.02 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -30.14 322.53 -7.45 -37.59 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.97 Total: 4.07 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -3.32 Total: -16.38 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.19 Total: -30.12 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.19 Total: -18.63 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.39 Total: 18.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.14 -7.45 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188676681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds