Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20758 * 120.00089 * 2 1 4 4 C 1.50699 * 119.99836 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.64375 * 31.86045 * 4 2 1 6 6 C 1.55155 * 110.71804 * 155.00695 * 4 2 1 7 7 C 1.54907 * 101.58499 * 154.04419 * 6 4 2 8 8 N 1.47434 * 104.82875 * 322.98763 * 7 6 4 9 9 C 1.34776 * 125.64456 * 204.09418 * 8 7 6 10 10 O 1.21554 * 119.99514 * 184.25583 * 9 8 7 11 11 C 1.47882 * 120.00242 * 4.25453 * 9 8 7 12 12 C 1.39924 * 120.02667 * 150.62267 * 11 9 8 13 13 C 1.38323 * 120.35966 * 179.97438 * 12 11 9 14 14 C 1.37756 * 120.41410 * 359.97438 * 13 12 11 15 15 C 1.40746 * 120.03844 * 359.97438 * 14 13 12 16 16 C 1.41434 * 120.17725 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99847 * 204.94209 * 16 15 14 18 18 C 1.39936 * 120.00141 * 24.93881 * 16 15 14 19 19 N 1.30822 * 120.00190 * 213.97101 * 18 16 15 20 20 Si 1.86804 * 119.99721 * 33.97030 * 18 16 15 21 21 H 1.48506 * 109.46999 * 266.74160 * 20 18 16 22 22 H 1.48503 * 109.46939 * 146.74739 * 20 18 16 23 23 H 1.48492 * 109.47200 * 26.74319 * 20 18 16 24 24 C 1.39001 * 120.02834 * 330.85777 * 11 9 8 25 25 C 1.47018 * 108.70156 * 24.35804 * 8 7 6 26 26 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46982 * 300.00612 * 1 2 3 28 28 H 1.08996 * 109.46882 * 60.00601 * 1 2 3 29 29 H 1.09002 * 111.01023 * 35.96358 * 6 4 2 30 30 H 1.09005 * 111.03352 * 272.12950 * 6 4 2 31 31 H 1.08998 * 110.36723 * 204.15023 * 7 6 4 32 32 H 1.08998 * 110.46386 * 81.87187 * 7 6 4 33 33 H 1.08002 * 119.81833 * 359.97438 * 12 11 9 34 34 H 1.08004 * 119.79210 * 180.02562 * 13 12 11 35 35 H 1.07999 * 119.97925 * 179.97438 * 14 13 12 36 36 H 0.97003 * 119.99868 * 5.09698 * 19 18 16 37 37 H 1.08002 * 120.19768 * 359.97438 * 24 11 9 38 38 H 1.08997 * 109.88122 * 118.13383 * 25 8 7 39 39 H 1.09003 * 109.87752 * 239.29993 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7024 -2.0713 -0.5375 6 6 3.6741 -1.1231 -0.6126 7 6 4.4597 -2.2699 0.0709 8 7 3.9219 -2.3307 1.4423 9 6 4.5666 -2.8252 2.5176 10 8 3.9963 -2.8959 3.5887 11 6 5.9678 -3.2818 2.3943 12 6 6.8269 -3.2109 3.4965 13 6 8.1386 -3.6366 3.3891 14 6 8.6144 -4.1355 2.1965 15 6 7.7648 -4.2155 1.0772 16 6 8.2504 -4.7268 -0.1489 17 1 7.7830 -4.4361 -1.0781 18 6 9.3365 -5.6091 -0.1579 19 7 10.1935 -5.5816 -1.1460 20 14 9.5625 -6.8264 1.2409 21 1 10.4571 -6.2376 2.2697 22 1 10.1676 -8.0769 0.7160 23 1 8.2428 -7.1323 1.8490 24 6 6.4339 -3.7771 1.1821 25 6 2.5636 -1.7683 1.4413 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 4.0923 -0.1517 -0.3490 30 1 3.6513 -1.2557 -1.6944 31 1 5.5251 -2.0405 0.0910 32 1 4.2851 -3.2130 -0.4471 33 1 6.4637 -2.8217 4.4363 34 1 8.7936 -3.5781 4.2458 35 1 9.6399 -4.4655 2.1203 36 1 10.1188 -4.9018 -1.8339 37 1 5.7753 -3.8305 0.3278 38 1 1.8466 -2.5304 1.7464 39 1 2.5144 -0.9170 2.1204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188676681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = -71.082389 kcal Electronic energy + Delta-G solvation = -22231.191747 eV Core-core repulsion = 18909.576380 eV Total energy + Delta-G solvation = -3321.615367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.67839 -40.52042 -39.07428 -38.11394 -35.70379 -33.54668 -32.20670 -31.71788 -31.32149 -29.52831 -26.79601 -26.05044 -23.60531 -23.32373 -22.23296 -21.14581 -20.35294 -19.67988 -18.12258 -17.90513 -17.28372 -16.74972 -16.39145 -16.13143 -15.92254 -15.75988 -15.59901 -15.12985 -14.81647 -14.48302 -14.29274 -13.98197 -13.90212 -13.54415 -13.34469 -13.12346 -13.04272 -12.92613 -12.66906 -12.40391 -12.24933 -12.15236 -11.89115 -11.80421 -11.46276 -11.03181 -10.83709 -10.66311 -9.89374 -9.67409 -9.57853 -9.38110 -6.53461 0.24078 0.78213 0.84400 1.41074 1.54233 1.72679 1.80767 1.92064 2.19178 2.54350 3.00980 3.27816 3.40751 3.42525 3.78455 4.03244 4.12349 4.15376 4.27582 4.30751 4.47373 4.53731 4.61615 4.64060 4.66186 4.70273 4.81171 4.84862 4.87325 5.00662 5.10115 5.16455 5.19784 5.37005 5.48296 5.66755 5.74955 5.83824 5.96643 6.28952 6.38136 6.48292 6.58764 6.75317 7.01898 7.89614 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.004158 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.898173 B = 6732.077160 C = 7450.253068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.372 3.628 3 O -0.497 6.497 4 C -0.146 4.146 5 H 0.152 0.848 6 C -0.120 4.120 7 C 0.092 3.908 8 N -0.614 5.614 9 C 0.576 3.424 10 O -0.580 6.580 11 C -0.107 4.107 12 C -0.200 4.200 13 C -0.079 4.079 14 C -0.238 4.238 15 C 0.073 3.927 16 C -0.552 4.552 17 H 0.064 0.936 18 C 0.032 3.968 19 N -0.814 5.814 20 Si 1.082 2.918 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.270 1.270 24 C -0.193 4.193 25 C 0.122 3.878 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.286 0.714 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.447 5.276 -1.603 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.249 3.751 3 O -0.373 6.373 4 C -0.165 4.165 5 H 0.170 0.830 6 C -0.158 4.158 7 C -0.030 4.030 8 N -0.347 5.347 9 C 0.368 3.632 10 O -0.462 6.462 11 C -0.110 4.110 12 C -0.220 4.220 13 C -0.097 4.097 14 C -0.257 4.257 15 C 0.070 3.930 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.187 4.187 19 N -0.435 5.435 20 Si 0.902 3.098 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.213 4.213 25 C 0.000 4.000 26 H 0.129 0.871 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.426 4.544 -0.608 15.137 hybrid contribution -0.528 1.382 -0.784 1.675 sum -14.954 5.926 -1.392 16.145 Atomic orbital electron populations 1.22316 0.90520 1.06986 1.05575 1.24915 0.93670 0.88476 0.68015 1.90426 1.73184 1.36280 1.37409 1.23032 0.98032 0.99233 0.96250 0.83045 1.22831 0.93103 0.97977 1.01855 1.22847 0.99473 0.99912 0.80757 1.48363 1.16813 1.60560 1.08930 1.18396 0.86311 0.76277 0.82239 1.90664 1.69077 1.57991 1.28442 1.19606 0.92170 1.03366 0.95885 1.20639 0.94313 1.09675 0.97350 1.20889 0.94961 0.96706 0.97187 1.21407 0.99356 1.09892 0.95046 1.17797 0.91348 0.91081 0.92779 1.20490 1.15557 1.28199 0.93752 0.91766 1.28035 0.89788 0.99156 1.01761 1.70604 1.29700 1.32319 1.10850 0.83510 0.78461 0.74610 0.73204 1.18172 1.19662 1.19432 1.21738 0.95670 1.07489 0.96357 1.21789 0.83599 0.98454 0.96162 0.87086 0.88458 0.87576 0.91392 0.86586 0.90773 0.89166 0.87155 0.84890 0.87606 0.90279 0.85329 0.88919 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 10.33 71.24 0.74 -0.92 16 2 C 0.37 6.38 6.32 29.10 0.18 6.56 16 3 O -0.50 -13.19 16.57 -1.44 -0.02 -13.21 16 4 C -0.15 -2.44 3.17 -10.35 -0.03 -2.47 16 5 H 0.15 1.36 8.13 -2.39 -0.02 1.35 16 6 C -0.12 -2.52 6.40 31.98 0.20 -2.31 16 7 C 0.09 2.52 5.04 86.85 0.44 2.96 16 8 N -0.61 -19.77 3.33 -815.12 -2.71 -22.48 16 9 C 0.58 23.60 7.62 86.80 0.66 24.27 16 10 O -0.58 -26.42 17.02 -3.88 -0.07 -26.49 16 11 C -0.11 -4.71 5.67 -20.13 -0.11 -4.82 16 12 C -0.20 -8.68 9.60 22.70 0.22 -8.46 16 13 C -0.08 -3.34 10.01 22.18 0.22 -3.12 16 14 C -0.24 -11.01 7.65 22.77 0.17 -10.84 16 15 C 0.07 3.54 5.12 -21.32 -0.11 3.43 16 16 C -0.55 -28.30 9.29 23.47 0.22 -28.09 16 17 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 18 C 0.03 1.60 5.13 85.25 0.44 2.04 16 19 N -0.81 -41.64 13.65 21.82 0.30 -41.34 16 20 Si 1.08 45.82 25.81 68.60 1.77 47.60 16 21 H -0.26 -10.17 6.56 99.48 0.65 -9.52 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.19 -8.59 7.65 23.01 0.18 -8.42 16 25 C 0.12 2.94 6.47 86.73 0.56 3.50 16 26 H 0.11 0.36 7.99 -2.39 -0.02 0.34 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 1.76 7.23 -2.39 -0.02 1.74 16 30 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 2.42 6.22 -2.39 -0.01 2.40 16 32 H 0.09 2.23 7.28 -2.39 -0.02 2.22 16 33 H 0.11 4.58 7.90 -2.91 -0.02 4.56 16 34 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.11 4.83 5.21 -2.91 -0.02 4.82 16 36 H 0.29 14.39 8.73 -92.71 -0.81 13.58 16 37 H 0.13 5.16 4.72 -2.91 -0.01 5.14 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.43 7.82 -2.39 -0.02 1.41 16 Total: -1.00 -66.61 322.53 4.22 -62.40 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.97 Total: 20.22 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.97 Total: -26.69 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -2.41 Total: -63.82 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.09 Total: -39.70 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.77 Total: 47.60 kcal Total: -66.61 4.22 -62.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188676681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.685 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds