Wall clock time and date at job start Tue Mar 31 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20762 * 119.99852 * 2 1 4 4 C 1.50700 * 120.00054 * 180.02562 * 2 1 3 5 5 H 1.08992 * 110.00045 * 43.90466 * 4 2 1 6 6 C 1.54336 * 109.99144 * 282.86145 * 4 2 1 7 7 C 1.55154 * 103.02342 * 218.66584 * 6 4 2 8 8 C 1.54914 * 101.57773 * 35.31069 * 7 6 4 9 9 N 1.47025 * 109.88033 * 164.99869 * 4 2 1 10 10 C 1.34770 * 125.64910 * 298.39261 * 9 4 2 11 11 O 1.21545 * 120.00189 * 353.90931 * 10 9 4 12 12 C 1.47890 * 120.00357 * 173.90998 * 10 9 4 13 13 C 1.39918 * 120.03002 * 160.12019 * 12 10 9 14 14 C 1.38324 * 120.35979 * 180.02562 * 13 12 10 15 15 C 1.37758 * 120.41069 * 359.69077 * 14 13 12 16 16 C 1.40750 * 120.03948 * 0.56037 * 15 14 13 17 17 C 1.41433 * 120.17678 * 179.74454 * 16 15 14 18 18 H 1.08003 * 120.00257 * 152.30404 * 17 16 15 19 19 C 1.39932 * 120.00138 * 332.30162 * 17 16 15 20 20 N 1.30827 * 120.00221 * 348.34928 * 19 17 16 21 21 Si 1.86801 * 120.00130 * 168.07002 * 19 17 16 22 22 H 1.48507 * 109.46869 * 60.00370 * 21 19 17 23 23 H 1.48500 * 109.47284 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47093 * 300.00230 * 21 19 17 25 25 C 1.38998 * 120.01923 * 340.13967 * 12 10 9 26 26 H 1.09001 * 109.46987 * 269.99598 * 1 2 3 27 27 H 1.08993 * 109.47155 * 29.99740 * 1 2 3 28 28 H 1.08997 * 109.47044 * 149.99776 * 1 2 3 29 29 H 1.09004 * 110.84595 * 100.19886 * 6 4 2 30 30 H 1.09003 * 110.66538 * 337.05190 * 6 4 2 31 31 H 1.08993 * 111.00506 * 277.23460 * 7 6 4 32 32 H 1.09003 * 111.03772 * 153.39511 * 7 6 4 33 33 H 1.09007 * 110.36107 * 204.15239 * 8 7 6 34 34 H 1.08998 * 110.46240 * 81.87509 * 8 7 6 35 35 H 1.08000 * 119.81383 * 0.02562 * 13 12 10 36 36 H 1.08002 * 119.79376 * 179.97438 * 14 13 12 37 37 H 1.07997 * 119.97731 * 180.31049 * 15 14 13 38 38 H 0.96996 * 120.00637 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.20556 * 359.95383 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8079 -1.9966 -0.7111 6 6 2.2448 -1.9241 1.4131 7 6 3.6710 -2.5195 1.5500 8 6 4.5177 -1.4800 0.7738 9 7 3.6671 -1.0701 -0.3584 10 6 4.1059 -0.5592 -1.5257 11 8 3.3222 -0.3531 -2.4317 12 6 5.5408 -0.2494 -1.7046 13 6 6.0748 -0.1229 -2.9917 14 6 7.4161 0.1662 -3.1668 15 6 8.2403 0.3392 -2.0767 16 6 7.7223 0.2106 -0.7743 17 6 8.5670 0.3823 0.3470 18 1 8.1565 0.7265 1.2848 19 6 9.9348 0.1062 0.2414 20 7 10.3962 -0.5215 -0.8097 21 14 11.1030 0.6407 1.5975 22 1 10.7049 -0.0022 2.8756 23 1 12.4871 0.2316 1.2483 24 1 11.0455 2.1170 1.7469 25 6 6.3602 -0.0840 -0.5940 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.4910 -2.7082 1.4848 30 1 2.0734 -1.1561 2.1674 31 1 3.7311 -3.5013 1.0806 32 1 3.9755 -2.5692 2.5954 33 1 5.4387 -1.9362 0.4107 34 1 4.7440 -0.6230 1.4081 35 1 5.4361 -0.2517 -3.8530 36 1 7.8187 0.2615 -4.1645 37 1 9.2854 0.5698 -2.2215 38 1 11.3443 -0.7125 -0.8831 39 1 5.9523 -0.1804 0.4013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188677959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:06 Heat of formation + Delta-G solvation = -41.978915 kcal Electronic energy + Delta-G solvation = -22734.240060 eV Core-core repulsion = 19413.886714 eV Total energy + Delta-G solvation = -3320.353346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47380 -38.58071 -37.15875 -36.67388 -33.64356 -32.00473 -30.85675 -29.93190 -29.61872 -28.19723 -25.31178 -24.39079 -21.94867 -21.72402 -20.82466 -19.91825 -18.75593 -17.32078 -16.69804 -16.20013 -15.52013 -15.32205 -14.86189 -14.73320 -14.63205 -13.97791 -13.93794 -13.40703 -13.14363 -12.91820 -12.86334 -12.56349 -12.23950 -12.17452 -12.10018 -11.67584 -11.61021 -11.32484 -11.19169 -10.97583 -10.86198 -10.62198 -10.48229 -10.15696 -9.69676 -9.45038 -9.25386 -9.09078 -8.29469 -7.59883 -7.45288 -6.75978 -4.43992 2.04396 2.23855 2.76090 3.04747 3.07124 3.14984 3.28721 3.74274 3.90991 4.11749 4.41909 4.58880 4.65828 4.86062 5.04371 5.19365 5.25219 5.35712 5.42169 5.55251 5.57634 5.59293 5.79237 5.80401 5.93173 6.01812 6.14976 6.22110 6.44038 6.55787 6.80675 6.94324 7.03845 7.20040 7.38220 7.59836 7.68517 7.85063 7.92904 8.00868 8.12976 8.52820 8.78388 8.82127 8.86243 10.18500 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.004825 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.961743 B = 5801.305407 C = 6562.207277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.343 3.657 3 O -0.436 6.436 4 C 0.088 3.912 5 H 0.099 0.901 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.098 3.902 9 N -0.607 5.607 10 C 0.589 3.411 11 O -0.555 6.555 12 C -0.116 4.116 13 C -0.172 4.172 14 C -0.118 4.118 15 C -0.132 4.132 16 C 0.098 3.902 17 C -0.464 4.464 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.804 5.804 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.195 4.195 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.281 0.719 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -5.150 6.322 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.215 3.785 3 O -0.307 6.307 4 C -0.017 4.017 5 H 0.117 0.883 6 C -0.155 4.155 7 C -0.173 4.173 8 C -0.024 4.024 9 N -0.341 5.341 10 C 0.382 3.618 11 O -0.434 6.434 12 C -0.119 4.119 13 C -0.192 4.192 14 C -0.137 4.137 15 C -0.152 4.152 16 C 0.096 3.904 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.430 5.430 21 Si 0.735 3.265 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.215 4.215 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.733 -4.533 5.654 13.790 hybrid contribution 0.544 0.115 0.537 0.773 sum -11.189 -4.418 6.191 13.529 Atomic orbital electron populations 1.22235 0.94248 1.04856 1.04220 1.24965 0.91918 0.90579 0.71023 1.90447 1.71870 1.34577 1.33808 1.22044 0.84859 0.96310 0.98497 0.88313 1.22536 0.98948 1.00366 0.93631 1.22879 0.93900 0.99092 1.01393 1.22746 0.95004 0.97074 0.87597 1.48202 1.05149 1.64840 1.15940 1.18592 0.89194 0.74597 0.79371 1.90647 1.57846 1.54141 1.40764 1.19207 0.90189 1.07196 0.95275 1.20455 0.95090 1.09172 0.94497 1.20695 0.93350 1.01846 0.97773 1.21633 0.99921 1.01817 0.91832 1.17562 0.90795 0.88811 0.93227 1.19479 0.92018 1.40286 0.97652 0.90484 1.25860 0.99071 0.92593 0.96655 1.69757 1.15963 1.29453 1.27813 0.86327 0.78706 0.80200 0.81227 1.19043 1.20373 1.18906 1.21836 0.94937 1.08225 0.96508 0.88850 0.89718 0.89745 0.89267 0.90453 0.90236 0.89420 0.88439 0.90780 0.88251 0.88596 0.85741 0.90829 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 10.25 36.01 0.37 -1.53 16 2 C 0.34 5.06 5.89 -29.03 -0.17 4.89 16 3 O -0.44 -8.64 16.77 6.00 0.10 -8.54 16 4 C 0.09 1.21 3.15 -68.10 -0.21 1.00 16 5 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 6 C -0.12 -1.10 6.47 -24.89 -0.16 -1.26 16 7 C -0.13 -1.40 7.09 -24.58 -0.17 -1.57 16 8 C 0.10 1.50 4.94 -2.53 -0.01 1.49 16 9 N -0.61 -10.91 2.76 -165.40 -0.46 -11.37 16 10 C 0.59 13.25 6.95 -12.31 -0.09 13.17 16 11 O -0.55 -13.62 16.50 5.33 0.09 -13.53 16 12 C -0.12 -2.79 5.74 -105.04 -0.60 -3.39 16 13 C -0.17 -4.15 9.59 -38.92 -0.37 -4.53 16 14 C -0.12 -2.82 10.01 -39.73 -0.40 -3.22 16 15 C -0.13 -3.40 8.66 -38.81 -0.34 -3.74 16 16 C 0.10 2.55 5.56 -106.87 -0.59 1.96 16 17 C -0.46 -11.85 9.06 -37.73 -0.34 -12.19 16 18 H 0.08 1.88 7.87 -52.48 -0.41 1.47 16 19 C 0.07 1.81 5.24 -17.35 -0.09 1.72 16 20 N -0.80 -20.17 10.81 55.55 0.60 -19.57 16 21 Si 0.91 18.21 29.58 -169.99 -5.03 13.18 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 25 C -0.20 -4.69 7.84 -38.44 -0.30 -4.99 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.63 8.12 -51.93 -0.42 0.20 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.65 6.60 -51.92 -0.34 1.30 16 34 H 0.07 1.17 6.92 -51.93 -0.36 0.81 16 35 H 0.10 2.32 7.77 -52.49 -0.41 1.91 16 36 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.12 3.27 6.15 -52.49 -0.32 2.94 16 38 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 39 H 0.11 2.50 4.15 -52.49 -0.22 2.28 16 LS Contribution 324.82 15.07 4.90 4.90 Total: -1.00 -32.38 324.82 -8.27 -40.65 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.99 Total: 6.48 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.49 Total: -12.19 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.14 Total: -30.94 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.19 Total: -22.08 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.38 -8.27 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.325 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds