Wall clock time and date at job start Tue Mar 31 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20762 * 119.99852 * 2 1 4 4 C 1.50700 * 120.00054 * 180.02562 * 2 1 3 5 5 H 1.08992 * 110.00045 * 43.90466 * 4 2 1 6 6 C 1.54336 * 109.99144 * 282.86145 * 4 2 1 7 7 C 1.55154 * 103.02342 * 218.66584 * 6 4 2 8 8 C 1.54914 * 101.57773 * 35.31069 * 7 6 4 9 9 N 1.47025 * 109.88033 * 164.99869 * 4 2 1 10 10 C 1.34770 * 125.64910 * 298.39261 * 9 4 2 11 11 O 1.21545 * 120.00189 * 353.90931 * 10 9 4 12 12 C 1.47890 * 120.00357 * 173.90998 * 10 9 4 13 13 C 1.39918 * 120.03002 * 160.12019 * 12 10 9 14 14 C 1.38324 * 120.35979 * 180.02562 * 13 12 10 15 15 C 1.37758 * 120.41069 * 359.69077 * 14 13 12 16 16 C 1.40750 * 120.03948 * 0.56037 * 15 14 13 17 17 C 1.41433 * 120.17678 * 179.74454 * 16 15 14 18 18 H 1.08003 * 120.00257 * 152.30404 * 17 16 15 19 19 C 1.39932 * 120.00138 * 332.30162 * 17 16 15 20 20 N 1.30827 * 120.00221 * 348.34928 * 19 17 16 21 21 Si 1.86801 * 120.00130 * 168.07002 * 19 17 16 22 22 H 1.48507 * 109.46869 * 60.00370 * 21 19 17 23 23 H 1.48500 * 109.47284 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47093 * 300.00230 * 21 19 17 25 25 C 1.38998 * 120.01923 * 340.13967 * 12 10 9 26 26 H 1.09001 * 109.46987 * 269.99598 * 1 2 3 27 27 H 1.08993 * 109.47155 * 29.99740 * 1 2 3 28 28 H 1.08997 * 109.47044 * 149.99776 * 1 2 3 29 29 H 1.09004 * 110.84595 * 100.19886 * 6 4 2 30 30 H 1.09003 * 110.66538 * 337.05190 * 6 4 2 31 31 H 1.08993 * 111.00506 * 277.23460 * 7 6 4 32 32 H 1.09003 * 111.03772 * 153.39511 * 7 6 4 33 33 H 1.09007 * 110.36107 * 204.15239 * 8 7 6 34 34 H 1.08998 * 110.46240 * 81.87509 * 8 7 6 35 35 H 1.08000 * 119.81383 * 0.02562 * 13 12 10 36 36 H 1.08002 * 119.79376 * 179.97438 * 14 13 12 37 37 H 1.07997 * 119.97731 * 180.31049 * 15 14 13 38 38 H 0.96996 * 120.00637 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.20556 * 359.95383 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8079 -1.9966 -0.7111 6 6 2.2448 -1.9241 1.4131 7 6 3.6710 -2.5195 1.5500 8 6 4.5177 -1.4800 0.7738 9 7 3.6671 -1.0701 -0.3584 10 6 4.1059 -0.5592 -1.5257 11 8 3.3222 -0.3531 -2.4317 12 6 5.5408 -0.2494 -1.7046 13 6 6.0748 -0.1229 -2.9917 14 6 7.4161 0.1662 -3.1668 15 6 8.2403 0.3392 -2.0767 16 6 7.7223 0.2106 -0.7743 17 6 8.5670 0.3823 0.3470 18 1 8.1565 0.7265 1.2848 19 6 9.9348 0.1062 0.2414 20 7 10.3962 -0.5215 -0.8097 21 14 11.1030 0.6407 1.5975 22 1 10.7049 -0.0022 2.8756 23 1 12.4871 0.2316 1.2483 24 1 11.0455 2.1170 1.7469 25 6 6.3602 -0.0840 -0.5940 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.4910 -2.7082 1.4848 30 1 2.0734 -1.1561 2.1674 31 1 3.7311 -3.5013 1.0806 32 1 3.9755 -2.5692 2.5954 33 1 5.4387 -1.9362 0.4107 34 1 4.7440 -0.6230 1.4081 35 1 5.4361 -0.2517 -3.8530 36 1 7.8187 0.2615 -4.1645 37 1 9.2854 0.5698 -2.2215 38 1 11.3443 -0.7125 -0.8831 39 1 5.9523 -0.1804 0.4013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188677959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:06 Heat of formation + Delta-G solvation = -61.486073 kcal Electronic energy + Delta-G solvation = -22735.085954 eV Core-core repulsion = 19413.886714 eV Total energy + Delta-G solvation = -3321.199240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81792 -40.10642 -38.81800 -38.16878 -35.53046 -33.36317 -31.93572 -31.80269 -31.24155 -29.29560 -27.22973 -25.79261 -23.48935 -22.96966 -22.39920 -21.47314 -20.11297 -19.01913 -17.95323 -17.71254 -17.32217 -16.80776 -16.54544 -16.01386 -15.83037 -15.49854 -15.37113 -14.92508 -14.75614 -14.35350 -14.19552 -13.87832 -13.53206 -13.37125 -13.29819 -13.03790 -12.93271 -12.85081 -12.63346 -12.55965 -12.23497 -12.17939 -11.88901 -11.74863 -11.31563 -11.09303 -10.95877 -10.74344 -9.73526 -9.50657 -9.37331 -8.61522 -6.40612 0.35602 0.90198 0.95014 1.41050 1.50022 1.53076 1.91647 2.00864 2.22545 2.75588 3.05210 3.44029 3.60518 3.64698 3.91401 4.04756 4.15117 4.21474 4.33273 4.45306 4.54901 4.57015 4.67670 4.74940 4.83403 4.90058 4.93468 4.99439 5.04697 5.11487 5.12539 5.25215 5.28392 5.34555 5.53040 5.77126 5.95340 5.99252 6.17725 6.35673 6.54908 6.58069 6.88521 6.90170 7.12050 8.35038 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.004825 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.961743 B = 5801.305407 C = 6562.207277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.339 3.661 3 O -0.502 6.502 4 C 0.071 3.929 5 H 0.115 0.885 6 C -0.102 4.102 7 C -0.121 4.121 8 C 0.086 3.914 9 N -0.605 5.605 10 C 0.580 3.420 11 O -0.587 6.587 12 C -0.127 4.127 13 C -0.189 4.189 14 C -0.115 4.115 15 C -0.157 4.157 16 C 0.073 3.927 17 C -0.492 4.492 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.830 5.830 21 Si 0.984 3.016 22 H -0.256 1.256 23 H -0.269 1.269 24 H -0.264 1.264 25 C -0.197 4.197 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.289 0.711 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.301 -6.627 8.682 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.216 3.784 3 O -0.378 6.378 4 C -0.033 4.033 5 H 0.133 0.867 6 C -0.139 4.139 7 C -0.159 4.159 8 C -0.036 4.036 9 N -0.337 5.337 10 C 0.372 3.628 11 O -0.469 6.469 12 C -0.130 4.130 13 C -0.209 4.209 14 C -0.133 4.133 15 C -0.177 4.177 16 C 0.070 3.930 17 C -0.521 4.521 18 H 0.098 0.902 19 C -0.178 4.178 20 N -0.456 5.456 21 Si 0.805 3.195 22 H -0.180 1.180 23 H -0.194 1.194 24 H -0.189 1.189 25 C -0.216 4.216 26 H 0.146 0.854 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.153 -6.055 8.047 16.566 hybrid contribution 0.923 0.519 -0.203 1.078 sum -12.230 -5.536 7.844 15.549 Atomic orbital electron populations 1.22264 0.89915 1.05797 1.06677 1.25814 0.94418 0.89794 0.68397 1.90440 1.73506 1.36542 1.37265 1.22617 0.82148 0.96762 1.01789 0.86695 1.22646 0.99382 1.01443 0.90460 1.22881 0.93279 0.97684 1.02008 1.22874 0.95254 0.98251 0.87178 1.48232 1.07946 1.62606 1.14872 1.18368 0.88328 0.75320 0.80770 1.90602 1.58142 1.55926 1.42228 1.19585 0.91707 1.06414 0.95319 1.20637 0.95382 1.09942 0.94980 1.20914 0.93131 1.00709 0.98557 1.21618 0.99728 1.03877 0.92497 1.17944 0.91850 0.89347 0.93813 1.19751 0.93229 1.41431 0.97733 0.90160 1.26722 1.00123 0.91864 0.99108 1.69820 1.16808 1.29534 1.29467 0.85209 0.76505 0.79535 0.78229 1.17959 1.19354 1.18860 1.22032 0.94438 1.07761 0.97414 0.85363 0.90625 0.86909 0.84607 0.89651 0.89043 0.86732 0.90741 0.91732 0.87845 0.86179 0.86800 0.90049 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 10.25 71.24 0.73 -2.32 16 2 C 0.34 9.55 5.89 29.10 0.17 9.72 16 3 O -0.50 -20.28 16.77 -1.45 -0.02 -20.30 16 4 C 0.07 1.79 3.15 44.60 0.14 1.93 16 5 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 6 C -0.10 -1.46 6.47 31.79 0.21 -1.26 16 7 C -0.12 -2.10 7.09 31.99 0.23 -1.87 16 8 C 0.09 2.61 4.94 86.86 0.43 3.04 16 9 N -0.60 -21.70 2.76 -795.49 -2.20 -23.90 16 10 C 0.58 26.90 6.95 86.80 0.60 27.50 16 11 O -0.59 -29.67 16.50 -3.86 -0.06 -29.74 16 12 C -0.13 -6.39 5.74 -20.13 -0.12 -6.50 16 13 C -0.19 -9.51 9.59 22.70 0.22 -9.29 16 14 C -0.11 -5.67 10.01 22.18 0.22 -5.45 16 15 C -0.16 -8.42 8.66 22.77 0.20 -8.23 16 16 C 0.07 3.93 5.56 -21.32 -0.12 3.81 16 17 C -0.49 -25.75 9.06 23.47 0.21 -25.53 16 18 H 0.08 4.00 7.87 -2.91 -0.02 3.98 16 19 C 0.04 1.77 5.24 85.25 0.45 2.21 16 20 N -0.83 -42.29 10.81 21.82 0.24 -42.06 16 21 Si 0.98 36.98 29.58 68.60 2.03 39.01 16 22 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 23 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 C -0.20 -9.86 7.84 23.01 0.18 -9.68 16 26 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.11 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.15 7.84 -2.39 -0.02 1.13 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.58 6.60 -2.38 -0.02 2.56 16 34 H 0.06 2.06 6.92 -2.39 -0.02 2.04 16 35 H 0.10 5.01 7.77 -2.91 -0.02 4.99 16 36 H 0.12 5.17 8.06 -2.91 -0.02 5.14 16 37 H 0.11 6.24 6.15 -2.91 -0.02 6.22 16 38 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 39 H 0.13 5.92 4.15 -2.91 -0.01 5.91 16 Total: -1.00 -75.69 324.82 4.80 -70.89 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 1.07 Total: 28.01 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.75 Total: -21.92 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -1.96 Total: -65.95 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -75.69 4.80 -70.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.404 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds